🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Petras J. Kundrotas

University of Kansas

ORCID: 0000-0001-5080-1664
Biochemistry, Genetics and Molecular BiologyMaterials ScienceComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
3.9Author DataRank

Indexed papers

5in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Papers

Driven by 22 papers — median percentile 46. Top paper: “Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment”.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

CAPRI-Q: The CAPRI resource evaluating the quality of predicted structures of protein complexes

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168540
N/A
1.3DataRank · unranked
42 citations

Matthew M. Copeland, Guillaume Brysbaert, Shoshana J. Wodak, Alexandre M. J. J. Bonvin, Petras J. Kundrotas +3 more

Dockground resource for protein recognition studies

Protein Science(2022)10.1002/pro.4481
Top 20%
0.993DataRank
Top 20%28 citations

Matthew M. Copeland, Ian Kotthoff, Amar Singh, Petras J. Kundrotas, Ilya A. Vakser +1 more

Dockground: The Resource Expands to Protein-RNA Interactome

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169014
Top 54%
0.307DataRank
Top 54%5 citations

Matthew M. Copeland, Petras J. Kundrotas, Ilya A. Vakser, Keeley W. Collins

GWYRE: A Resource for Mapping Variants onto Experimental and Modeled Structures of Human Protein Complexes

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167608
Top 55%
0.304DataRank
Top 55%6 citations

Harold R. Powell, Alessia David, Suhail A. Islam, Matthew M. Copeland, Petras J. Kundrotas +3 more

Dockground scoring benchmarks for protein docking

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.02.458795
N/A
0DataRank · unranked
1 citations

Petras J. Kundrotas, Ilya A. Vakser, Ian Kotthoff

DOCKGROUND Membrane Protein-Protein Set

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.04.467360
N/A
0DataRank · unranked
0 citations

Petras J. Kundrotas, Ilya A. Vakser, Ian Kotthoff

A structural biology community assessment of AlphaFold2 applications

Nature Structural & Molecular Biology(2022)10.1038/s41594-022-00849-w
N/A
0DataRank · unranked
730 citations

Douglas E. V. Pires, Eduard Porta‐Pardo, Jürgen Jänes, Arthur O. Zalevsky, Bálint Mészáros +29 more

Docking-based long timescale simulation of cell-size protein systems at atomic resolution

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2210249119
N/A
0DataRank · unranked
20 citations

Sergei Grudinin, Nathan W. Jenkins, Petras J. Kundrotas, Eric J. Deeds, Ilya A. Vakser

Size of the protein-protein energy funnel in crowded environment

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.1031225
N/A
0DataRank · unranked
4 citations

Petras J. Kundrotas, Ilya A. Vakser, Nathan W. Jenkins

Dockground scoring benchmarks for protein docking

Proteins Structure Function and Bioinformatics(2022)10.1002/prot.26306
N/A
0DataRank · unranked
5 citations

Petras J. Kundrotas, Ilya A. Vakser, Ian Kotthoff

DOCKGROUND membrane protein-protein set

PLoS ONE(2022)10.1371/journal.pone.0267531
N/A
0DataRank · unranked
3 citations

Petras J. Kundrotas, Ilya A. Vakser, Ian Kotthoff

Docking-based long timescale simulation of cell-size protein systems at atomic resolution

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.07.495183
N/A
0DataRank · unranked
3 citations

Sergei Grudinin, Nathan W. Jenkins, Petras J. Kundrotas, Eric J. Deeds, Ilya A. Vakser

Diffusion of proteins in crowded solutions studied by docking-based modeling

The Journal of Chemical Physics(2024)10.1063/5.0220545
N/A
0DataRank · unranked
13 citations

Petras J. Kundrotas, Ilya A. Vakser, Amar Singh

GRAMMCell: Docking-based Cell Modeling Resource

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169085
N/A
0DataRank · unranked
6 citations

Andrii M. Tytarenko, Vineeth Kumar Ambati, Matthew M. Copeland, Petras J. Kundrotas, Pavlo O. Kasyanov +3 more

Modeling CAPRI Targets of Round 55 by Combining AlphaFold and Docking

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.26853
N/A
0DataRank · unranked
0 citations

Matthew M. Copeland, Petras J. Kundrotas, Ilya A. Vakser, Amar Singh

How to choose templates for modeling of protein complexes: Insights from benchmarking template‐based docking

Proteins Structure Function and Bioinformatics(2020)10.1002/prot.25875
N/A
0DataRank · unranked
13 citations

GW McElfresh, Petras J. Kundrotas, Ilya A. Vakser, Devlina Chakravarty

Dockground: Expanding the Resource to Protein-DNA Complexes

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169553
Top 100%
0DataRank
Top 100%0 citations

Matthew M. Copeland, Petras J. Kundrotas, Ilya A. Vakser, Keeley W. Collins

Structural motifs in protein cores and at protein–protein interfaces are different

Protein Science(2020)10.1002/pro.3996
N/A
0DataRank · unranked
11 citations

Devlina Chakravarty, Alexander V. Tuzikov, Nir Ben‐Tal, Petras J. Kundrotas, Ilya A. Vakser +1 more

Application of docking methodologies to modeled proteins

Proteins Structure Function and Bioinformatics(2020)10.1002/prot.25889
N/A
0DataRank · unranked
45 citations

Taras Dauzhenka, Petras J. Kundrotas, Michael J.E. Sternberg, Ilya A. Vakser, Amar Singh

Text mining for modeling of protein complexes enhanced by machine learning

Bioinformatics(2020)10.1093/bioinformatics/btaa823
N/A
0DataRank · unranked
4 citations

Petras J. Kundrotas, Ilya A. Vakser, Varsha D. Badal

A structural biology community assessment of AlphaFold 2 applications

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.26.461876
N/A
0DataRank · unranked
143 citations

Douglas E. V. Pires, Eduard Porta‐Pardo, Jürgen Jänes, Arthur O. Zalevsky, Bálint Mészáros +26 more