🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Chih-Hsuan Wei

National Institutes of Health

ORCID: 0000-0001-5094-7321

Also affiliated with United States National Library of Medicine, National Institute of Nursing Research

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
12.2Author DataRank

Indexed papers

8in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

BioRED: a rich biomedical relation extraction dataset

Briefings in Bioinformatics(2022)10.1093/bib/bbac282
Top 5%
4.3DataRank
Top 5%154 citations

Po‐Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, ZHIYONG LU, Ling Luo

Papers

Driven by 29 papers — median percentile 78. Top paper: “BioRED: a rich biomedical relation extraction dataset”.

BioRED: a rich biomedical relation extraction dataset

Briefings in Bioinformatics(2022)10.1093/bib/bbac282
Top 5%
4.3DataRank
Top 5%154 citations

Po‐Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, ZHIYONG LU, Ling Luo

PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge

Nucleic Acids Research(2024)10.1093/nar/gkae235
Top 6%
3.8DataRank
Top 6%167 citations

Alexis Allot, Po‐Ting Lai, Robert Leaman, Shubo Tian, Ling Luo +5 more

Artificial Intelligence in Action: Addressing the COVID-19 Pandemic with Natural Language Processing

Annual Review of Biomedical Data Science(2021)10.1146/annurev-biodatasci-021821-061045
N/A
2.6DataRank · unranked
65 citations

Robert Leaman, Alexis Allot, Ling Luo, Chih-Hsuan Wei, Shankai Yan +2 more

NLM-Gene, a richly annotated gold standard dataset for gene entities that addresses ambiguity and multi-species gene recognition

Journal of Biomedical Informatics(2021)10.1016/j.jbi.2021.103779
Top 17%
1.2DataRank
Top 17%33 citations

Chih-Hsuan Wei, David S. Cissel, Nicholas Miliaras, Olga Printseva, Oleg Rodionov +4 more

EnzChemRED, a rich enzyme chemistry relation extraction dataset

Scientific Data(2024)10.1038/s41597-024-03835-7
Top 21%
0.945DataRank
Top 21%11 citations

Elisabeth Coudert, Lucila Aimo, Kristian B. Axelsen, Lionel Breuza, Edouard de Castro +14 more

LitCovid in 2022: an information resource for the COVID-19 literature

Nucleic Acids Research(2022)10.1093/nar/gkac1005
Top 22%
0.909DataRank
Top 22%31 citations

Alexis Allot, Robert Leaman, Chih-Hsuan Wei, Elaheh Aghaarabi, John J. Guerrerio +3 more

Archive of PubTator 3.0 source code and trained models

PubMed(2024)10.48550/arxiv.2401.11048
Top 32%
0.613DataRank
Top 32%3 citations

Alexis Allot, Po‐Ting Lai, Robert Leaman, Shubo Tian, Ling Luo +5 more

GeneAgent: self-verification language agent for gene-set analysis using domain databases

Nature Methods(2025)10.1038/s41592-025-02748-6
N/A
0.581DataRank · unranked
47 citations

Qiao Jin, Chih-Hsuan Wei, Shubo Tian, Po‐Ting Lai, Qingqing Zhu +5 more

Tracking genetic variants in the biomedical literature using LitVar 2.0

Nature Genetics(2023)10.1038/s41588-023-01414-x
N/A
0.557DataRank · unranked
40 citations

Chih-Hsuan Wei, Lon Phan, Timothy Hefferon, Melissa Landrum, Heidi L. Rehm +2 more

Enhancing biomedical relation extraction with directionality

Bioinformatics(2025)10.1093/bioinformatics/btaf226
N/A
0.309DataRank · unranked
5 citations

Chih-Hsuan Wei, Shubo Tian, Robert Leaman, ZHIYONG LU, Po‐Ting Lai

Assessing Artificial Intelligence (AI) Implementation for Assisting Gene Linking (at the National Library of Medicine)

JAMIA Open(2024)10.1093/jamiaopen/ooae129
Top 56%
0.293DataRank
Top 56%3 citations

Chih-Hsuan Wei, Po‐Ting Lai, Melanie Huston, Cathleen Coss, Preeti Gokal Kochar +9 more

BioHackathon 2015: Semantics of data for life sciences and reproducible research

F1000Research(2020)10.12688/f1000research.18236.1
N/A
0.292DataRank · unranked
6 citations

Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim +72 more

The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop

Database(2024)10.1093/database/baae071
Top 62%
0.227DataRank
Top 62%3 citations

Chih-Hsuan Wei, Po‐Ting Lai, Ling Luo, Cathleen Coss, Preeti Gokal Kochar +7 more

Correspondence on “Comparison of literature mining tools for variant classification: Through the lens of 50 RYR1 variants” by Wermers et al

Genetics in Medicine(2024)10.1016/j.gim.2024.101208
N/A
0.104DataRank · unranked
1 citations

Lon Phan, Timothy Hefferon, Melissa Landrum, Heidi L. Rehm, ZHIYONG LU +1 more

AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning

Bioinformatics(2023)10.1093/bioinformatics/btad310
N/A
0DataRank · unranked
70 citations

Chih-Hsuan Wei, Po‐Ting Lai, Robert Leaman, Qingyu Chen, ZHIYONG LU +1 more

Bioformer: an efficient transformer language model for biomedical text mining

PubMed(2023)10.48550/arxiv.2302.01588
N/A
0DataRank · unranked
15 citations

Qingyu Chen, Chih-Hsuan Wei, ZHIYONG LU, Kai Wang, Fang Li

A Sequence Labeling Framework for Extracting Drug-Protein Relations from Biomedical Literature

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.31.486574
N/A
0DataRank · unranked
0 citations

Po‐Ting Lai, Chih-Hsuan Wei, ZHIYONG LU, Ling Luo

Advancing entity recognition in biomedicine via instruction tuning of large language models

Bioinformatics(2024)10.1093/bioinformatics/btae163
N/A
0DataRank · unranked
95 citations

Yan Hu, Qianqian Xie, Xueqing Peng, Yan Wang, Andrew Zheng +8 more

A sequence labeling framework for extracting drug–protein relations from biomedical literature

Database(2022)10.1093/database/baac058
N/A
0DataRank · unranked
4 citations

Po‐Ting Lai, Chih-Hsuan Wei, ZHIYONG LU, Ling Luo

tmVar 3.0: an improved variant concept recognition and normalization tool

Bioinformatics(2022)10.1093/bioinformatics/btac537
N/A
0DataRank · unranked
25 citations

Alexis Allot, Kevin Riehle, Aleksandar Milosavljević, ZHIYONG LU, Chih-Hsuan Wei

NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature

Scientific Data(2021)10.1038/s41597-021-00875-1
N/A
0DataRank · unranked
70 citations

Robert Leaman, Sun Kim, Dongseop Kwon, Chih-Hsuan Wei, Donald C. Comeau +14 more

GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases

PubMed(2024)10.48550/arxiv.2405.16205
N/A
0DataRank · unranked
2 citations

Qiao Jin, Chih-Hsuan Wei, Shubo Tian, Po‐Ting Lai, Qingqing Zhu +4 more

Augmenting Biomedical Named Entity Recognition with General-domain Resources

arXiv (Cornell University)(2024)10.48550/arxiv.2406.10671
N/A
0DataRank · unranked
0 citations

Hyunjae Kim, Xiao Xiao, Chih-Hsuan Wei, Jaewoo Kang, ZHIYONG LU +4 more

Ten tips for a text-mining-ready article: How to improve automated discoverability and interpretability

PLoS Biology(2020)10.1371/journal.pbio.3000716
N/A
0DataRank · unranked
13 citations

Chih-Hsuan Wei, Alexis Allot, ZHIYONG LU, Robert Leaman

BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007617
N/A
0DataRank · unranked
65 citations

Kyubum Lee, Shankai Yan, Sun Kim, Chih-Hsuan Wei, ZHIYONG LU +1 more

Enhancing Biomedical Relation Extraction with Directionality

arXiv (Cornell University)(2025)10.48550/arxiv.2501.14079
N/A
0DataRank · unranked
0 citations

Chih-Hsuan Wei, Shubo Tian, Robert Leaman, ZHIYONG LU, Po‐Ting Lai

BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets

Journal of Biomedical Informatics(2023)10.1016/j.jbi.2023.104487
N/A
0DataRank · unranked
51 citations

Chih-Hsuan Wei, Ling Luo, Qingyu Chen, ZHIYONG LU, Po‐Ting Lai

FAIR-SMART expands access to supplementary materials for research transparency

PLoS Biology(2025)10.1371/journal.pbio.3003428
N/A
0DataRank · unranked
0 citations

Robert Leaman, Po-Ting Lai, D. C. Comeau, Shubo Tian, ZHIYONG LU +1 more

GNorm2: an improved gene name recognition and normalization system

Bioinformatics(2023)10.1093/bioinformatics/btad599
N/A
0DataRank · unranked
42 citations

Ling Luo, Rezarta Islamaj, Po‐Ting Lai, ZHIYONG LU, Chih-Hsuan Wei