Francesca Petralia

Institut thématique Génétique, génomique et bioinformatique

Also affiliated with Icahn School of Medicine at Mount Sinai

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

3.5Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Proteogenomic data and resources for pan-cancer analysis

Cancer Cell(2023)10.1016/j.ccell.2023.06.009

Top 6%

3.4DataRank

Top 6%241 citations

Yongchao Dou, Felipe da Veiga Leprevost, Yifat Geffen, Anna Calinawan, François Aguet +93 more

Papers

Driven by 46 papers — median percentile 58. Top paper: “Proteogenomics connects somatic mutations to signalling in breast cancer”.

Proteogenomics connects somatic mutations to signalling in breast cancer

Nature(2016)10.1038/nature18003

N/A

12.7DataRank · unranked

1777 citations

Philipp Mertins, D. R. Mani, Kelly V. Ruggles, Michael A. Gillette, Karl R. Clauser +31 more

Correction: Corrigendum: Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

Scientific Reports(2016)10.1038/srep19384

N/A

10.4DataRank · unranked

722 citations

Tao Huang, Francesca Petralia, Quan Long, Bin Zhang, Carmen Argmann +129 more

Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma

Cell(2020)10.1016/j.cell.2020.06.013

N/A

9.1DataRank · unranked

837 citations

Shankha Satpathy, Song Cao, Saravana M. Dhanasekaran, Suhas Vasaikar, Karsten Krug +95 more

Proteogenomic and metabolomic characterization of human glioblastoma

Cancer Cell(2021)10.1016/j.ccell.2021.01.006

N/A

8.7DataRank · unranked

702 citations

Alla Y. Karpova, Marina A. Gritsenko, Jennifer Kyle, Song Cao, Yize Li +95 more

A proteogenomic portrait of lung squamous cell carcinoma

Cell(2021)10.1016/j.cell.2021.07.016

N/A

7.2DataRank · unranked

392 citations

Karsten Krug, Pierre M. Jean Beltran, Sara R. Savage, Francesca Petralia, Chandan Kumar‐Sinha +95 more

Deep Remission at 1 Year Prevents Progression of Early Crohn’s Disease

Gastroenterology(2020)10.1053/j.gastro.2020.03.039

N/A

5.7DataRank · unranked

240 citations

Clara Yzet, Peter Bossuyt, Filip J. Baert, Thomas Vanasek, Geert D’Haens +34 more

Intestinal Host Response to SARS-CoV-2 Infection and COVID-19 Outcomes in Patients With Gastrointestinal Symptoms

Gastroenterology(2021)10.1053/j.gastro.2021.02.056

N/A

5.2DataRank · unranked

162 citations

Divya Jha, Francesca Cossarini, Ana S. Gonzalez‐Reiche, Minami Tokuyama, Teresa Aydillo +48 more

Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness

Cancer Cell(2022)10.1016/j.ccell.2022.12.001

N/A

3.6DataRank · unranked

216 citations

T. Mamie Lih, Saravana M. Dhanasekaran, Rahul Mannan, Lijun Chen, Marcin Cieślik +95 more

Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation

Cell(2023)10.1016/j.cell.2023.07.013

N/A

3.5DataRank · unranked

197 citations

Shankara Anand, Yo Akiyama, Tomer M. Yaron, Yizhe Song, Jared L. Johnson +90 more

Proteogenomic data and resources for pan-cancer analysis

Cancer Cell(2023)10.1016/j.ccell.2023.06.009

Top 6%

3.4DataRank

Top 6%241 citations

Yongchao Dou, Felipe da Veiga Leprevost, Yifat Geffen, Anna Calinawan, François Aguet +93 more

Neutralizing Anti-Granulocyte Macrophage-Colony Stimulating Factor Autoantibodies Recognize Post-Translational Glycosylations on Granulocyte Macrophage-Colony Stimulating Factor Years Before Diagnosis and Predict Complicated Crohn’s Disease

Gastroenterology(2022)10.1053/j.gastro.2022.05.029

N/A

1.9DataRank · unranked

69 citations

Romain Remark, Diane M. Del Valle, Ling-Shiang Chuang, Zhi Chai, Inês Alves +30 more

Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin

Cancer Cell(2023)10.1016/j.ccell.2023.07.013

N/A

1.8DataRank · unranked

107 citations

Rita Jui-Hsien Lu, Reyka G. Jayasinghe, Steven M. Foltz, Eduard Porta‐Pardo, Yifat Geffen +95 more

Pan-cancer proteogenomics characterization of tumor immunity

Cell(2024)10.1016/j.cell.2024.01.027

N/A

1.7DataRank · unranked

91 citations

Weiping Ma, Tomer M. Yaron, Francesca Pia Caruso, Nicole Tignor, Joshua M. Wang +95 more

Inflammatory Bowel Disease Is Associated With Prediagnostic Perturbances in Metabolic Pathways

Gastroenterology(2022)10.1053/j.gastro.2022.09.007

N/A

1.1DataRank · unranked

38 citations

Ryan C. Ungaro, Lauren Petrick, Andrew T. Chan, Chad K. Porter, Hamed Khalili +18 more

Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics

Cell Systems(2020)10.1016/j.cels.2020.06.013

N/A

1.1DataRank · unranked

32 citations

Francesca Petralia, Zhi Li, Hongyang Li, Weiping Ma, Xiaoyu Song +87 more

Comprehensive proteogenomic characterization of rare kidney tumors

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101547

N/A

0.920DataRank · unranked

46 citations

Lijun Chen, Yi Hsiao, Rahul Mannan, Yuping Zhang, Jie Luo +95 more

Single-cell analysis of human non-small cell lung cancer lesions refines tumor classification and patient stratification

Cancer Cell(2021)10.1016/j.ccell.2021.10.009

N/A

0.884DataRank · unranked

362 citations

John A. Grout, Barbara B. Maier, Barzin Y. Nabet, Matthew D. Park, Alexandra Tabachnikova +28 more

Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer

Cell(2020)10.1016/j.cell.2020.10.044

N/A

0.878DataRank · unranked

347 citations

Nicole Tignor, Boris Reva, Mateusz P. Koptyra, Shrabanti Chowdhury, Dmitry Rykunov +94 more

Deep learning integrates histopathology and proteogenomics at a pan-cancer level

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101173

N/A

0.843DataRank · unranked

33 citations

Runyu Hong, Elizabeth G. Demicco, Jimin Tan, Rossana Lazcano, André L. Moreira +95 more

Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

Scientific Reports(2015)10.1038/srep15145

N/A

0.811DataRank · unranked

222 citations

Tao Huang, Francesca Petralia, Quan Long, Bin Zhang, Carmen Argmann +128 more

Anti-Integrin αvβ6 Autoantibodies Are a Novel Biomarker That Antedate Ulcerative Colitis

Gastroenterology(2023)10.1053/j.gastro.2022.12.042

N/A

0.685DataRank · unranked

95 citations

Alexandra Dunn, J Fischer, Ryan C. Ungaro, Williams Turpin, Sun-Ho Lee +61 more

Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer

Cell(2023)10.1016/j.cell.2023.07.004

N/A

0.680DataRank · unranked

92 citations

Jacob J. Kennedy, Richard G. Ivey, Oscar Murillo, Noshad Hosseini, Xiaoyu Song +42 more

A unique serum IgG glycosylation signature predicts development of Crohn’s disease and is associated with pathogenic antibodies to mannose glycan

Nature Immunology(2024)10.1038/s41590-024-01916-8

N/A

0.612DataRank · unranked

58 citations

Cláudia S. Rodrigues, Francesca Petralia, Inês Alves, Eduarda Leite-Gomes, Bruno Cavadas +16 more

Gastrointestinal involvement attenuates COVID-19 severity and mortality

medRxiv(2020)10.1101/2020.09.07.20187666

N/A

0.568DataRank · unranked

43 citations

Divya Jha, Francesca Cossarini, Ana S. Gonzalez‐Reiche, Minami Tokuyama, Teresa Aydillo +38 more

Gender-Based Differences in Response to Tumor Necrosis Factor Inhibitor Therapies for Ulcerative Colitis: Individual Participant Data Meta-Analyses of Clinical Trials

Inflammatory Bowel Diseases(2022)10.1093/ibd/izac067

N/A

0.425DataRank · unranked

16 citations

Francesca Petralia, Adam Tepler, Laura Durbin, Walter Reinisch, Jean‐Frédéric Colombel +2 more

Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer

Cell(2024)10.1016/j.cell.2024.01.016

N/A

0.373DataRank · unranked

11 citations

Jacob J. Kennedy, Richard G. Ivey, Oscar Murillo, Noshad Hosseini, Xiaoyu Song +42 more

CITEseq analysis of non-small-cell lung cancer lesions reveals an axis of immune cell activation associated with tumor antigen load and TP53 mutations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.16.207605

N/A

0.373DataRank · unranked

11 citations

John A. Grout, Christie Chang, Barbara B. Maier, Alexandra Tabachnikova, Laura Walker +23 more

Precision proteogenomics reveals pan-cancer impact of germline variants

Cell(2025)10.1016/j.cell.2025.03.026

N/A

0.341DataRank · unranked

8 citations

Nadezhda V. Terekhanova, Kathleen J. Imbach, Karl R. Clauser, Myvizhi Esai Selvan, Isabel Mendizabal +132 more

Gastrointestinal germinal center B cell depletion and reduction in IgA + plasma cells in HIV-1 infection

Science Immunology(2024)10.1126/sciimmunol.ado0090

N/A

0.309DataRank · unranked

5 citations

Joan Shang, Azra Krek, Zainab Al-Taie, Ruixue Hou, Pablo Canales-Herrerías +30 more

Proteogenomics connects somatic mutations to signalling in breast cancer

UNC Libraries(2020)10.17615/mepw-5x28

N/A

0.269DataRank · unranked

5 citations

Mani, Kelly V. Ruggles, Michael A. Gillette, Karl R. Clauser, Pei Wang +31 more

Proteomic-based stemness score measures oncogenic dedifferentiation and enables the identification of druggable targets

Cell Genomics(2025)10.1016/j.xgen.2025.100851

N/A

0.254DataRank · unranked

4 citations

Renan Simões, Emerson de Souza Santos, Elizabeth G. Demicco, Rossana N. Lazcano Segura, Ma Weiping +95 more

Proteogenomic analysis of the CALGB 40601 (Alliance) HER2+ breast cancer neoadjuvant trial reveals resistance biomarkers

Cell Reports Medicine(2025)10.1016/j.xcrm.2025.102154

N/A

0.212DataRank · unranked

3 citations

Aranzazu Fernandez-Martinez, Tanmayi D. Vashist, Matthew V. Holt, LaTerrica Williams, Jonathan T. Lei +26 more

CPTAC Pancancer Phosphoproteomics Kinase Enrichment Analysis with ProKAP Provides Insights into Immunogenic Signaling Pathways

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.05.450069

Top 78%

0.104DataRank

Top 78%1 citations

Weiping Ma, John Erol Evangelista, Boris Reva, Francesca Petralia, Avi Ma’ayan +2 more

ProNetView-ccRCC: A web-based portal to interactively explore clear cell renal cell carcinoma proteogenomics networks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.12.981357

N/A

0.104DataRank · unranked

1 citations

Francesca Petralia, Pei Wang, Zeynep H. Gümüş, Selim Kalaycı

Anti-integrin αvβ6 Autoantibodies Are Increased in Primary Sclerosing Cholangitis Patients With Concomitant Inflammatory Bowel Disease and Correlate With Liver Disease Severity

Clinical Gastroenterology and Hepatology(2024)10.1016/j.cgh.2024.10.005

N/A

0DataRank · unranked

11 citations

Alexandra E. Livanos, Adrielly Martins, Richard E. Dean, Ana Catarina Bravo, Arno R. Bourgonje +13 more

Safety of Immunosuppression in a Prospective Cohort of Inflammatory Bowel Disease Patients With a HIstoRy of CancEr: SAPPHIRE Registry

Clinical Gastroenterology and Hepatology(2024)10.1016/j.cgh.2024.05.006

N/A

0DataRank · unranked

14 citations

Yue Jiang, Cristina Villagra, Jean‐Frédéric Colombel, Keith Sultan, Dana J. Lukin +13 more

High Serum Pesticide Levels Are Associated With Increased Odds of Inflammatory Bowel Disease in a Nested Case-Control Study

Gastroenterology(2024)10.1053/j.gastro.2024.10.041

N/A

0DataRank · unranked

8 citations

Ryan C. Ungaro, Palak Rajauria, Jared Magee, Lauren Petrick, Vishal Midya +21 more

ProTrack: An Interactive Multi‐Omics Data Browser for Proteogenomic Studies

PROTEOMICS(2020)10.1002/pmic.201900359

N/A

0DataRank · unranked

15 citations

Xiaoyu Song, Jiayi Ji, Saravana M. Dhanasekaran, Francesca Petralia, Pei Wang +2 more

Racial Difference in Efficacy of Golimumab in Ulcerative Colitis

Inflammatory Bowel Diseases(2022)10.1093/ibd/izac161

N/A

0DataRank · unranked

16 citations

Francesca Petralia, Thomas Ullman, Jean‐Frédéric Colombel, Ryan C. Ungaro, Ruby Greywoode

ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.05.935650

N/A

0DataRank · unranked

1 citations

Xiaoyu Song, Jiayi Ji, Saravana M. Dhanasekaran, Francesca Petralia, Pei Wang +2 more

Per- and Poly-Fluoroalkyl Substances Exposure Is Associated With Later Occurrence of Inflammatory Bowel Disease

Clinical Gastroenterology and Hepatology(2023)10.1016/j.cgh.2023.12.020

N/A

0DataRank · unranked

19 citations

Vishal Midya, Amith S. Maroli, Jared Magee, Lauren Petrick, Jean‐Frédéric Colombel +7 more

Preclinical Serological Signatures are Associated With Complicated Crohn’s Disease Phenotype at Diagnosis

Clinical Gastroenterology and Hepatology(2023)10.1016/j.cgh.2023.01.033

N/A

0DataRank · unranked

28 citations

Francesca Petralia, Joana Torres, Ryan C. Ungaro, Chad Porter, Takahiro Sato +8 more

Gut-associated lymphoid tissue attrition associates with response to anti-α4β7 therapy in ulcerative colitis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.19.524731

N/A

0DataRank · unranked

14 citations

Mathieu Uzzan, Akihiro Seki, Rafael S. Czepielewski, Bram Verstockt, Alexandra E. Livanos +36 more

Myeloid cell influx into the colonic epithelium is associated with disease severity and non-response to anti-Tumor Necrosis Factor Therapy in patients with Ulcerative Colitis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.02.542863

N/A

0DataRank · unranked

5 citations

Zainab Al-Taie, Azra Krek, Shadi Toghi Eshghi, Aurélie Fantou, Thomas Laurent +29 more

Anti-integrin αvβ6 autoantibodies are a novel predictive biomarker in ulcerative colitis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.21.517399

N/A

0DataRank · unranked

2 citations

Alexandra Dunn, J Fischer, Ryan C. Ungaro, Williams Turpin, Sun-Ho Lee +20 more

Gut-associated lymphoid tissue attrition associates with response to anti-α4β7 therapy in ulcerative colitis

Science Immunology(2024)10.1126/sciimmunol.adg7549

N/A

0DataRank · unranked

39 citations

Mathieu Uzzan, Akihiro Seki, Rafael S. Czepielewski, Bram Verstockt, Alexandra E. Livanos +40 more

Francesca Petralia

Indexed papers

Top data-sharing exemplar

Papers