🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Atul Deshpande

Bloomberg (United States)

ORCID: 0000-0001-5144-6924

Also affiliated with Johns Hopkins University, Convergence, Johns Hopkins Hospital, Sidney Kimmel Comprehensive Cancer Center

Biochemistry, Genetics and Molecular BiologyMedicineMathematics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile
0.459Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

CD137 agonism enhances anti-PD1 induced activation of expanded CD8+ T cell clones in a neoadjuvant pancreatic cancer clinical trial

iScience(2024)10.1016/j.isci.2024.111569
Top 41%
0.459DataRank
Top 41%15 citations

Jacob T. Mitchell, Joseph A. Tandurella, Eric S. Christenson, Ludmila Danilova, Atul Deshpande +29 more

Papers

Driven by 17 papers — median percentile 59. Top paper: “Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories”.

Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories

Cell(2025)10.1016/j.cell.2025.06.048
N/A
0.945DataRank · unranked
45 citations

Daniel Bergman, Heber L. Rocha, David Zhou, Eric Cramer, Ian C. McLean +42 more

Integrating single cell sequencing with a spatial quantitative systems pharmacology model spQSP for personalized prediction of triple-negative breast cancer immunotherapy response

ImmunoInformatics(2021)10.1016/j.immuno.2021.100002
N/A
0.844DataRank · unranked
31 citations

Chang Gong, Álvaro Ruiz-Martínez, Hanwen Wang, Emily F. Davis-Marcisak, Atul Deshpande +3 more

Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces

Cell Systems(2023)10.1016/j.cels.2023.03.004
N/A
0.557DataRank · unranked
40 citations

Melanie Loth, Dimitrios N. Sidiropoulos, Shuming Zhang, Long Yuan, Alexander T.F. Bell +25 more

CD137 agonism enhances anti-PD1 induced activation of expanded CD8+ T cell clones in a neoadjuvant pancreatic cancer clinical trial

iScience(2024)10.1016/j.isci.2024.111569
Top 41%
0.459DataRank
Top 41%15 citations

Jacob T. Mitchell, Joseph A. Tandurella, Eric S. Christenson, Ludmila Danilova, Atul Deshpande +29 more

Community-wide hackathons to identify central themes in single-cell multi-omics

Genome Biology(2021)10.1186/s13059-021-02433-9
N/A
0.436DataRank · unranked
15 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Mapping the breast tumor microenvironment: proximity analysis reveals spatial relationships between macrophage subtypes and metastasis-initiating cancer cells

Oncogene(2024)10.1038/s41388-024-03127-9
N/A
0.373DataRank · unranked
11 citations

Atul Deshpande, Jae W. Lee, Yeonju Cho, Sarah M. Shin, Erin M. Coyne +7 more

Spatial proteomics and transcriptomics reveal early immune cell organization in pancreatic intraepithelial neoplasia

JCI Insight(2025)10.1172/jci.insight.191595
N/A
0.368DataRank · unranked
10 citations

Jacob T. Mitchell, Sidharth Raghavan, Luciane T. Kagohara, Amanda L. Huff, Saurav D. Haldar +29 more

Integration of Clinical Trial Spatial Multiomics Analysis and Virtual Clinical Trials Enables Immunotherapy Response Prediction and Biomarker Discovery

Cancer Research(2024)10.1158/0008-5472.can-24-0943
N/A
0DataRank · unranked
35 citations

Atul Deshpande, Babita K. Verma, Hanwen Wang, Haoyang Mi, Long Yuan +9 more

Computational methods and biomarker discovery strategies for spatial proteomics: a review in immuno-oncology

Briefings in Bioinformatics(2024)10.1093/bib/bbae421
N/A
0DataRank · unranked
34 citations

Shamilene Sivagnanam, Won Jin Ho, Shuming Zhang, Daniel Bergman, Atul Deshpande +6 more

Virtual patient analysis identifies strategies to improve the performance of predictive biomarkers for PD-1 blockade

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2410911121
N/A
0DataRank · unranked
15 citations

Hanwen Wang, Atul Deshpande, Ravi Varadhan, Leisha A. Emens, Elizabeth M. Jaffee +4 more

Informing virtual clinical trials of hepatocellular carcinoma with spatial multi-omics analysis of a human neoadjuvant immunotherapy clinical trial

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.11.553000
N/A
0DataRank · unranked
6 citations

Atul Deshpande, Babita K. Verma, Hanwen Wang, Hao‐Yang Mi, Long Yuan +9 more

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

Genome Biology(2021)10.1186/s13059-021-02468-y
N/A
0DataRank · unranked
0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

UNC Libraries(2025)10.17615/vzc0-qk25
N/A
0DataRank · unranked
0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

scatterHatch: an R/Bioconductor package for generating colorblind-friendly scatter plots for single-cell data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.07.463279
N/A
0DataRank · unranked
0 citations

Elana J. Fertig, Atul Deshpande, Tejas Guha

PanIN and CAF Transitions in Pancreatic Carcinogenesis Revealed with Spatial Data Integration

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.16.500312
N/A
0DataRank · unranked
15 citations

Jacob T. Mitchell, Ashley Kiemen, Kohei Fujikura, Helen Fedor, Bonnie Gambichler +15 more

Community-wide hackathons to identify central themes in single-cell multi-omics

UNC Libraries(2025)10.17615/96cj-z232
N/A
0DataRank · unranked
0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

PanIN and CAF transitions in pancreatic carcinogenesis revealed with spatial data integration

Cell Systems(2024)10.1016/j.cels.2024.07.001
N/A
0DataRank · unranked
52 citations

Jacob T. Mitchell, Ashley Kiemen, Melissa R. Lyman, Kohei Fujikura, Jae W. Lee +22 more