Jun Ding

Also affiliated with Mila - Quebec Artificial Intelligence Institute, McGill University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 25 papers. Top paper: “Reconstructed Single-Cell Fate Trajectories Define Lineage Plasticity Windows during Differentiation of Human PSC-Derived Distal Lung Progenitors”.

Reconstructed Single-Cell Fate Trajectories Define Lineage Plasticity Windows during Differentiation of Human PSC-Derived Distal Lung Progenitors

Cell stem cell(2020)10.1016/j.stem.2019.12.009

N/A

0.766DataRank · unranked

164 citations

Jun Ding, Carlos Villacorta-Martín, Michael J. Herriges, Anjali Jacob, Marall Vedaie +18 more

Identifying signaling genes in spatial single-cell expression data

Bioinformatics(2020)10.1093/bioinformatics/btaa769

N/A

0.614DataRank · unranked

59 citations

Jun Ding, Ziv Bar‐Joseph, Dongshunyi Li

Alveolar epithelial cell plasticity and injury memory in human pulmonary fibrosis

10.1101/2025.06.10.658504

N/A

0.373DataRank · unranked

11 citations

Jonas C. Schupp, Agshin Balayev, Johad Khoury, Aurélien Justet, Fadi Nikola +15 more

DOLPHIN advances single-cell transcriptomics beyond gene level by leveraging exon and junction reads

Nature Communications(2025)10.1038/s41467-025-61580-w

N/A

0.165DataRank · unranked

2 citations

Yumin Zheng, Bowen Zhao, David H. Eidelman, Jian Tang, Jun Ding +1 more

Inferring TF activation order in time series scRNA-Seq studies

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007644

N/A

0DataRank · unranked

15 citations

Jun Ding, Ziv Bar‐Joseph, Chieh Hubert Lin

Reconstructed signaling and regulatory networks identify potential drugs for SARS-CoV-2 infection

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.01.127589

N/A

0DataRank · unranked

6 citations

Jose Lugo-Martinez, Ye Yuan, Jessie Huang, Adam J. Hume, Ellen L. Suder +4 more

Identifying signaling genes in spatial single cell expression data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.27.221465

N/A

0DataRank · unranked

6 citations

Jun Ding, Ziv Bar‐Joseph, Dongshunyi Li

Identification of Lysine Isobutyrylation as A New Histone Modification Mark

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.31.270165

N/A

0DataRank · unranked

3 citations

Zhen Han, Levon Halabelian, Xiangkun Yang, Jun Ding, Nawei Zhang +10 more

Histone crotonylation promotes mesoendodermal commitment of human embryonic stem cells

Cell stem cell(2021)10.1016/j.stem.2020.12.009

N/A

0DataRank · unranked

155 citations

Xiaojiang Xu, Jun Ding, Lu Yang, Mary T. Doan, Peer W. F. Karmaus +5 more

Histone lysine methacrylation is a dynamic post-translational modification regulated by HAT1 and SIRT2

Cell Discovery(2021)10.1038/s41421-021-00344-4

N/A

0DataRank · unranked

57 citations

Minjia Tan, Zhesi Zhu, Jinjun Gao, Lunzhi Dai, Sun‐Joo Kim +11 more

Aryl hydrocarbon receptor deficiency causes the development of chronic obstructive pulmonary disease through the integration of multiple pathogenic mechanisms

The FASEB Journal(2021)10.1096/fj.202002350r

N/A

0DataRank · unranked

25 citations

Hussein Traboulsi, Angela Rico de Souza, Yohan Bossé, Thomas H. Thatcher, Annette Robichaud +20 more

Computational tools for analyzing single-cell data in pluripotent cell differentiation studies

Cell Reports Methods(2021)10.1016/j.crmeth.2021.100087

N/A

0DataRank · unranked

11 citations

Amir Alavi, Mo R. Ebrahimkhani, Ziv Bar‐Joseph, Jun Ding

Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.454054

N/A

0DataRank · unranked

4 citations

Jeremy J. Velazquez, Jun Ding, Joshua Hislop, Mo R. Ebrahimkhani, Ziv Bar‐Joseph +1 more

Cellar: Interactive single cell data annotation tool

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.19.436162

N/A

0DataRank · unranked

3 citations

Jingtao Wang, Arjun Sarathi, Jun Ding, Ziv Bar‐Joseph, Euxhen Hasanaj

Unsupervised cell functional annotation for single-cell RNA-Seq

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.20.469410

N/A

0DataRank · unranked

2 citations

Jun Ding, Ziv Bar‐Joseph, Dongshunyi Li

Temporal modelling using single-cell transcriptomics

Nature Reviews Genetics(2022)10.1038/s41576-021-00444-7

N/A

0DataRank · unranked

217 citations

Nadav Sharon, Ziv Bar‐Joseph, Jun Ding

Interactive single-cell data analysis using Cellar

Nature Communications(2022)10.1038/s41467-022-29744-0

N/A

0DataRank · unranked

35 citations

Jingtao Wang, Arjun Sarathi, Jun Ding, Ziv Bar‐Joseph, Euxhen Hasanaj

TraSig: inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data

Genome biology(2022)10.1186/s13059-022-02629-7

N/A

0DataRank · unranked

21 citations

Jeremy J. Velazquez, Jun Ding, Joshua Hislop, Mo R. Ebrahimkhani, Ziv Bar‐Joseph +1 more

UNIFAN: A Tool for Unsupervised Single-Cell Clustering and Annotation

Journal of Computational Biology(2022)10.1089/cmb.2022.0251

N/A

0DataRank · unranked

4 citations

Jun Ding, Ziv Bar‐Joseph, Dongshunyi Li

Unsupervised cell functional annotation for single-cell RNA-seq

Genome Research(2022)10.1101/gr.276609.122

N/A

0DataRank · unranked

10 citations

Jun Ding, Ziv Bar‐Joseph, Dongshunyi Li

Dichotomic Regulation of Striatal Plasticity by Dynorphin

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.04.487051

N/A

0DataRank · unranked

0 citations

Rupa Lalchandani Tuan, Fuu-Jiun Hwang, Daniel W. Bloodgood, Dong Kong, Jun Ding +1 more

A fast and responsive voltage indicator with enhanced sensitivity for unitary synaptic events

Neuron(2024)10.1016/j.neuron.2024.08.019

N/A

0DataRank · unranked

48 citations

Sungmoo Lee, Richard H. Roth, Silvia Natale, L. Gómez, Jiannis Taxidis +19 more

A deep generative model for deciphering cellular dynamics and in silico drug discovery in complex diseases

Nature Biomedical Engineering(2025)10.1038/s41551-025-01423-7

N/A

0DataRank · unranked

19 citations

Jonas C. Schupp, Taylor Adams, Gérémy Clair, A. Justet, Farida Ahangari +17 more

Analysis of time-series regulatory networks

Current Opinion in Systems Biology(2020)10.1016/j.coisb.2020.07.005

N/A

0DataRank · unranked

17 citations

Ziv Bar‐Joseph, Jun Ding

Identification of lysine isobutyrylation as a new histone modification mark

Nucleic Acids Research(2020)10.1093/nar/gkaa1176

N/A

0DataRank · unranked

69 citations

Zhen Han, Levon Halabelian, Xiangkun Yang, Jun Ding, Nawei Zhang +10 more