Nicole A. Vasilevsky

University of Colorado Anschutz Medical Campus

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

15.0Author DataRank

Indexed papers

16in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 16 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Phenotype Ontology in 2021

Nucleic Acids Research(2020)10.1093/nar/gkaa1043

Top 3%

7.0DataRank

Top 3%1255 citations

Michael Gargano, Nicolas Matentzoglu, Leigh C Carmody, David Lewis‐Smith, Nicole A. Vasilevsky +46 more

Papers

Driven by 36 papers — median percentile 40. Top paper: “The Human Phenotype Ontology in 2021”.

The Human Phenotype Ontology in 2021

Nucleic Acids Research(2020)10.1093/nar/gkaa1043

Top 3%

7.0DataRank

Top 3%1255 citations

Michael Gargano, Nicolas Matentzoglu, Leigh C Carmody, David Lewis‐Smith, Nicole A. Vasilevsky +46 more

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

Database(2021)10.1093/database/baab069

N/A

5.0DataRank · unranked

210 citations

Nicolas A Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg +20 more

Mondo: Unifying diseases for the world, by the world

medRxiv(2022)10.1101/2022.04.13.22273750

Top 8%

2.7DataRank

Top 8%104 citations

Nicolas A Matentzoglu, Sabrina Toro, Joseph E Flack, Harshad Hegde, Deepak R Unni +83 more

The GA4GH Phenopacket schema defines a computable representation of clinical data

Nature Biotechnology(2022)10.1038/s41587-022-01357-4

N/A

2.4DataRank · unranked

111 citations

Michael Baudis, Gareth Baynam, J. Beckmann, Sergi Beltrán, Orion J. Buske +62 more

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

Nucleic Acids Research(2023)10.1093/nar/gkad1082

Top 14%

1.5DataRank

Top 14%106 citations

Kevin Schaper, Nicolas A Matentzoglu, Vincent Rubinetti, Faisal Alquaddoomi, Corey Cox +39 more

Prenatal phenotyping: A community effort to enhance the Human Phenotype Ontology

American Journal of Medical Genetics Part C Seminars in Medical Genetics(2022)10.1002/ajmg.c.31989

N/A

1.4DataRank · unranked

53 citations

Patricia Morgan, Bimal P. Chaudhari, Isabel Filges, Teresa N. Sparks, Pablo Lapunzina +31 more

An open source knowledge graph ecosystem for the life sciences

Scientific Data(2024)10.1038/s41597-024-03171-w

Top 15%

1.4DataRank

Top 15%63 citations

Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M Wyrwa +27 more

Characterizing Long COVID: Deep Phenotype of a Complex Condition

eBioMedicine(2021)10.1016/j.ebiom.2021.103722

N/A

0.802DataRank · unranked

209 citations

Nicole A. Vasilevsky, Leigh C Carmody, Diane N. Rafizadeh, Alfred J Anzalone, Marc D. Basson +53 more

Is authorship sufficient for today’s collaborative research? A call for contributor roles

Accountability in Research(2020)10.1080/08989621.2020.1779591

N/A

0.678DataRank · unranked

91 citations

Mohammad Hosseini, Samantha Teplitzky, Violeta Ilik, Ehsan Mohammadi, Juliane Schneider +11 more

The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond

Journal of Biomedical Semantics(2023)10.1186/s13326-023-00283-x

Top 31%

0.648DataRank

Top 31%17 citations

Anne E. Thessen, William D. Duncan, Nicolas A Matentzoglu, Charles Schmitt, Cynthia Grondin +6 more

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies

Database(2022)10.1093/database/baac087

N/A

0.639DataRank · unranked

70 citations

Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron +22 more

The GA4GH Phenopacket schema: A computable representation of clinical data for precision medicine

medRxiv(2021)10.1101/2021.11.27.21266944

N/A

0.631DataRank · unranked

14 citations

Michael Baudis, Gareth Baynam, J. Beckmann, Sergi Beltrán, Tiffany J. Callahan +42 more

The Ontology of Biological Attributes (OBA)—computational traits for the life sciences

Mammalian Genome(2023)10.1007/s00335-023-09992-1

Top 33%

0.596DataRank

Top 33%21 citations

James P. Balhoff, Meghan A. Balk, Robyn L. Ball, Susan M. Bello, Anita R. Caron +21 more

Guidelines for reporting single-cell RNA-seq experiments

Nature Biotechnology(2020)10.1038/s41587-020-00744-z

N/A

0.593DataRank · unranked

51 citations

Nancy George, Matthew Green, Parisa Nejad, Bruce J. Aronow, Silvie Korena Fexova +15 more

Characterizing Long COVID: Deep Phenotype of a Complex Condition

medRxiv(2021)10.1101/2021.06.23.21259416

N/A

0.470DataRank · unranked

22 citations

Madeline A Rock, Nicole A. Vasilevsky, Leigh C Carmody, Diane N. Rafizadeh, Alfred J Anzalone +53 more

Ontologizing health systems data at scale: making translational discovery a reality

npj Digital Medicine(2023)10.1038/s41746-023-00830-x

N/A

0.464DataRank · unranked

21 citations

Adrianne L. Stefanski, Jordan M Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda +27 more

Mondo: integrating disease terminology across communities

Genetics(2025)10.1093/genetics/iyaf215

N/A

0.425DataRank · unranked

16 citations

Sabrina Toro, Nicolas A Matentzoglu, Joseph E Flack, Kathleen R. Mullen, Harshad Hegde +95 more

The Unified Phenotype Ontology : a framework for cross-species integrative phenomics

Genetics(2025)10.1093/genetics/iyaf027

Top 45%

0.406DataRank

Top 45%10 citations

Susan M. Bello, Ray Stefancsik, Sarah M. Alghamdi, Anna V. Anagnostopoulos, James P. Balhoff +41 more

OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.01.446587

N/A

0.406DataRank · unranked

14 citations

Nicolas A Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg +20 more

The Medical Action Ontology: A tool for annotating and analyzing treatments and clinical management of human disease

Med(2023)10.1016/j.medj.2023.10.003

N/A

0.360DataRank · unranked

10 citations

Michael Gargano, Sabrina Toro, Nicole A. Vasilevsky, Margaret P Adam, Hannah Blau +21 more

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.26.525742

Top 59%

0.254DataRank

Top 59%3 citations

James P. Balhoff, Meghan A. Balk, Robyn L. Ball, Susan M. Bello, Anita R. Caron +21 more

The Medical Action Ontology: A Tool for Annotating and Analyzing Treatments and Clinical Management of Human Disease

medRxiv(2023)10.1101/2023.07.13.23292612

Top 60%

0.246DataRank

Top 60%3 citations

Michael Gargano, Sabrina Toro, Nicole A. Vasilevsky, Margaret P Adam, Hannah Blau +21 more

The Vertebrate Breed Ontology: Toward Effective Breed Data Standardization

Journal of Veterinary Internal Medicine(2025)10.1111/jvim.70133

N/A

0.165DataRank · unranked

2 citations

Imke Tammen, Nicolas A Matentzoglu, Marius Mather, James P. Balhoff, Elizabeth Esdaile +11 more

Development of self-phenotyping tools to empower patients and improve diagnostics

EBioMedicine(2025)10.1016/j.ebiom.2025.105965

Top 71%

0.124DataRank

Top 71%1 citations

Sonja I. Ziniel, Julie A. McMurry, Catherine A. Brownstein, John S. Brownstein, Erin Rooney Riggs +10 more

An Open-Source Knowledge Graph Ecosystem for the Life Sciences

Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)(2023)10.48550/arxiv.2307.05727

Top 78%

0.104DataRank

Top 78%1 citations

Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M Wyrwa +27 more

A Simple Standard for Sharing Ontological Mappings (SSSOM)

Database(2022)10.1093/database/baac035

N/A

0.104DataRank · unranked

1 citations

James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew Brush, Tiffany J. Callahan +39 more

The ClinGen Syndromic Disorders Gene Curation Expert Panel: Assessing the Clinical Validity of 111 Gene-Disease Relationships

medRxiv(2024)10.1101/2024.11.19.24317561

Top 78%

0.104DataRank

Top 78%1 citations

Vanessa Gitau, Alicia B. Byrne, Pamela Ajuyah, Marie Balzotti, Jonathan S. Berg +58 more

cell type annotations for deepcelltypes-HuBMAP, v1.1

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm927.rndp.426

Top 100%

0DataRank

Top 100%0 citations

Nicole A. Vasilevsky, Aleix Puig-Barbe

The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research

Database(2021)10.1093/database/baab003

N/A

0DataRank · unranked

29 citations

Nicole A. Vasilevsky, Anne E. Thessen, Julie A. McMurry, Melissa A Haendel, Lauren E Chan

A Simple Standard for Ontological Mappings 2023: Updates on data model, collaborations and tooling

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8202395

N/A

0DataRank · unranked

0 citations

Ian Braun, Anita R. Caron, Damien Goutte-Gattat, Benjamin M. Gyori, Nomi L. Harris +11 more

Significantly different clinical phenotypes associated with mutations in synthesis and transamidase+remodeling glycosylphosphatidylinositol (GPI)-anchor biosynthesis genes

Orphanet Journal of Rare Diseases(2020)10.1186/s13023-020-1313-0

N/A

0DataRank · unranked

34 citations

Hannah Blau, Daniel Daniš, Xingman A. Zhang, Jean-Philippe F. Gourdine, Nicole A. Vasilevsky +4 more

Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery

UNC Libraries(2024)10.17615/1tsk-ff12

N/A

0DataRank · unranked

0 citations

Amy Yates, Leigh C Carmody, Emily Pfaff, Christopher G. Chute, Hao Xu +25 more

The ClinGen Syndromic Disorders Gene Curation Expert Panel: Assessing the clinical validity of 111 gene-disease relationships

Genetics in Medicine Open(2025)10.1016/j.gimo.2025.103429

Top 100%

0DataRank

Top 100%0 citations

Vanessa Gitau, Alicia B. Byrne, Pamela Ajuyah, Marie Balzotti, Jonathan S. Berg +58 more

cell type annotations for deepcelltypes, v1.1

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm525.cbgx.696

Top 100%

0DataRank

Top 100%0 citations

Nicole A. Vasilevsky, Aleix Puig-Barbe

cell type annotations for Azimuth, v1.3

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm294.fplh.558

Top 100%

0DataRank

Top 100%0 citations

Aleix Puig-Barbe, Nicole A. Vasilevsky, Ellen M. Quardokus

BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference

F1000Research(2022)10.12688/f1000research.125043.1

N/A

0DataRank · unranked

0 citations

Karsten Hokamp, Hervé Ménager, Monica C Munoz-Torres, Deepak R Unni, Nicole A. Vasilevsky +2 more

Nicole A. Vasilevsky

Indexed papers

Top data-sharing exemplar

Papers