James J. Collins

Also affiliated with Cincinnati Children's Hospital Medical Center, Howard Hughes Medical Institute, Massachusetts Institute of Technology, The University of Texas Southwestern Medical Center

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyEnvironmental ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.1Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

SchistoCyte Atlas: A Single-Cell Transcriptome Resource for Adult Schistosomes

Trends in Parasitology(2021)10.1016/j.pt.2021.04.010

Top 19%

1.1DataRank

Top 19%30 citations

Michael L. Reese, James J. Collins, George Wendt

Papers

Driven by 18 papers — median percentile 81. Top paper: “A single-cell RNA-seq atlas of Schistosoma mansoni identifies a key regulator of blood feeding”.

A single-cell RNA-seq atlas of Schistosoma mansoni identifies a key regulator of blood feeding

Science(2020)10.1126/science.abb7709

N/A

4.2DataRank · unranked

235 citations

Lu Zhao, Rui Chen, Chenxi Liu, Anthony J. O’Donoghue, Conor R. Caffrey +3 more

SchistoCyte Atlas: A Single-Cell Transcriptome Resource for Adult Schistosomes

Trends in Parasitology(2021)10.1016/j.pt.2021.04.010

Top 19%

1.1DataRank

Top 19%30 citations

Michael L. Reese, James J. Collins, George Wendt

A single-cell RNAseq atlas of the pathogenic stage of Schistosoma mansoni identifies a key regulator of blood feeding

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.03.932004

N/A

0DataRank · unranked

14 citations

Lu Zhao, Rui Chen, Chenxi Liu, Anthony J. O’Donoghue, Conor R. Caffrey +2 more

Analysis of Schistosoma mansoni Extracellular Vesicles Surface Glycans Reveals Potential Immune Evasion Mechanism and New Insights on Their Origins of Biogenesis

Pathogens(2021)10.3390/pathogens10111401

N/A

0DataRank · unranked

24 citations

Jared Q. Gerlach, George Wendt, James J. Collins, Louise E. Atkinson, Angela Mousley +3 more

The Schistosoma mansoni nuclear receptor FTZ-F1 maintains esophageal gland function via transcriptional regulation of meg-8.3

PLoS Pathogens(2021)10.1371/journal.ppat.1010140

N/A

0DataRank · unranked

16 citations

Sarah A. Cobb, Julie Collins, Julie N. R. Collins, Steven A. Kliewer, David J. Mangelsdorf +2 more

Single-cell RNA-seq analyses show that long non-coding RNAs are conspicuously expressed in Schistosoma mansoni gamete and tegument progenitor cell populations

Frontiers in Genetics(2022)10.3389/fgene.2022.924877

N/A

0DataRank · unranked

11 citations

Lu Zhao, Gilbert O. Silveira, Ana Carolina Tahira, Murilo Sena Amaral, James J. Collins +2 more

Field validation of the performance of paper-based tests for the detection of the Zika and chikungunya viruses in serum samples

Figshare(2023)10.32920/22027733.v1

N/A

0DataRank · unranked

3 citations

Severino Jefferson Ribeiro da Silva, Yuxiu Guo, Seray Cicek, Larissa Krokovsky, Paige Homme +24 more

Helminth infection impacts hematopoiesis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.10.528073

N/A

0DataRank · unranked

1 citations

Jipeng Wang, Joseph Rose, Madeleine Marlar-Pavey, James J. Collins, Michalis Agathocleous +1 more

Field validation of the performance of paper-based tests for the detection of the Zika and chikungunya viruses in serum samples

(2023)10.32920/22027733

N/A

0DataRank · unranked

0 citations

Severino Jefferson Ribeiro da Silva, Yuxiu Guo, Seray Cicek, Larissa Krokovsky, Paige Homme +24 more

A niche-derived nonribosomal peptide triggers planarian sexual development

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2321349121

N/A

0DataRank · unranked

14 citations

Katherine L. Browder, Rui Chen, James J. Collins, Phillip A. Newmark, Melanie Issigonis

Schistosome Infection Impacts Hematopoiesis

The Journal of Immunology(2024)10.4049/jimmunol.2300195

N/A

0DataRank · unranked

9 citations

Joseph Rose, Jipeng Wang, Jacob Zielke, Madeleine Marlar-Pavey, Weina Chen +3 more

The recurrent deep intronic pseudoexon-inducing variant COL6A1 c.930+189C>T results in a consistently severe phenotype of COL6-related dystrophy: Towards clinical trial readiness for splice-modulating therapy

medRxiv(2024)10.1101/2024.03.29.24304673

N/A

0DataRank · unranked

2 citations

Véronique Bolduc, Fady Guirguis, Sandra Donkervoort, Ying Hu, Rotem Orbach +64 more

Horizontal gene transfer of a functional cki homolog in the human pathogen Schistosoma mansoni

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.27.596073

N/A

0DataRank · unranked

2 citations

James J. Collins, George Wendt

A Kruppel-like factor establishes cellular heterogeneity during schistosome tegumental maintenance

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.12.603265

N/A

0DataRank · unranked

1 citations

George Wendt, James J. Collins, Lu Zhao

A generative deep learning approach to de novo antibiotic design

Cell(2025)10.1016/j.cell.2025.07.033

N/A

0DataRank · unranked

66 citations

Melis N. Anahtar, Jacqueline A. Valeri, Wengong Jin, Nina M. Donghia, Leif Sieben +27 more

Unusual inheritance of a functional cki homolog in the human pathogen Schistosoma mansoni

Science Advances(2025)10.1126/sciadv.aea4905

N/A

0DataRank · unranked

1 citations

James J. Collins, George Wendt

Loss of vitamin C biosynthesis protects from the pathology of a parasitic infection

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2517730122

N/A

0DataRank · unranked

0 citations

Ji Hyung Jun, Tobias Wijshake, Edward Owusu Kwarteng, Yunyang Li, Minwei Yuan +12 more

Schistosoma mansoni venom allergen-like protein 6 (SmVAL6) maintains tegumental barrier function

International Journal for Parasitology(2020)10.1016/j.ijpara.2020.09.004

N/A

0DataRank · unranked

9 citations

Kathrin K. Geyer, Priscila Silva Grijó Farani, Iain W. Chalmers, Narcís Fernández‐Fuentes, Daniel R. Maskell +7 more

James J. Collins

Indexed papers

Top data-sharing exemplar

Papers