Benjamin P. Brown

MedicineBiochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “Computational identification of HCV neutralizing antibodies with a common HCDR3 disulfide bond motif in the antibody repertoires of infected individuals”.

Computational identification of HCV neutralizing antibodies with a common HCDR3 disulfide bond motif in the antibody repertoires of infected individuals

Nature Communications(2022)10.1038/s41467-022-30865-9

N/A

0.330DataRank · unranked

8 citations

Andrew I. Flyak, Benjamin P. Brown, Stormy E Ruiz, Jordan Salas, Semi Rho +8 more

Lipocalin Blc is a potential heme‐binding protein

FEBS Letters(2020)10.1002/1873-3468.14001

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0DataRank · unranked

6 citations

M. Wade Calcutt, William N. Beavers, Benjamin P. Brown, Eric P. Skaar, Jens Meiler +1 more

Co-occurring gain-of-function mutations in HER2 and HER3 modulate HER2/HER3 activation, oncogenesis, and HER2 inhibitor sensitivity

Cancer Cell(2021)10.1016/j.ccell.2021.06.001

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0DataRank · unranked

103 citations

Benjamin P. Brown, Jens Meiler, Arnaldo Marín, Harikrishna Sekar Jayanthan, Dan Ye +13 more

Structure–function analysis of oncogenic EGFR Kinase Domain Duplication reveals insights into activation and a potential approach for therapeutic targeting

Nature Communications(2021)10.1038/s41467-021-21613-6

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0DataRank · unranked

71 citations

Benjamin P. Brown, Soyeon Kim, Donna C. Ferguson, Dean C. Pavlick, Gowtham Jayakumaran +13 more

General Purpose Structure-Based Drug Discovery Neural Network Score Functions with Human-Interpretable Pharmacophore Maps

Journal of Chemical Information and Modeling(2021)10.1021/acs.jcim.0c01001

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0DataRank · unranked

38 citations

Jeffrey Mendenhall, Alexander R. Geanes, Jens Meiler, Benjamin P. Brown

Dissecting Monomer-Dimer Equilibrium of an RNase P Protein Provides Insight Into the Synergistic Flexibility of 5’ Leader Pre-tRNA Recognition

Frontiers in Molecular Biosciences(2021)10.3389/fmolb.2021.730274

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0DataRank · unranked

4 citations

Ainur Abzhanova, Benjamin P. Brown, Nicholas J. Reiter, Danyun Zeng

Introduction to the BioChemical Library (BCL): An Application-Based Open-Source Toolkit for Integrated Cheminformatics and Machine Learning in Computer-Aided Drug Discovery

Frontiers in Pharmacology(2022)10.3389/fphar.2022.833099

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0DataRank · unranked

28 citations

Oanh Vu, Alexander R. Geanes, Sandeepkumar Kothiwale, Mariusz Butkiewicz, Edward W. Lowe +5 more

Allele-specific activation, enzyme kinetics, and inhibitor sensitivities of EGFR exon 19 deletion mutations in lung cancer

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.16.484661

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0DataRank · unranked

3 citations

Yunkai Zhang, Soyeon Kim, Patrick Finneran, Yingjun Yan, Zhenfang Du +7 more

Time-resolved live-cell spectroscopy reveals EphA2 multimeric assembly

Science(2023)10.1126/science.adg5314

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0DataRank · unranked

46 citations

Ryan Lingerak, Cameron J. Herting, Yifan Ge, Soyeon Kim, Paul Toth +11 more

Acquired Secondary HER2 Mutations Enhance HER2/MAPK Signaling and Promote Resistance to HER2 Kinase Inhibition in Breast Cancer

Cancer Research(2023)10.1158/0008-5472.can-22-3617

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0DataRank · unranked

30 citations

Abdullah Al Mamun, Hima Patel, Hiroaki Akamatsu, Dan Ye, Dhivya R. Sudhan +7 more

Macrocyclic Octapeptide Binding and Inferences on Protein Substrate Binding to Histone Deacetylase 6

ACS Chemical Biology(2023)10.1021/acschembio.3c00113

N/A

0DataRank · unranked

7 citations

Suchetana Gupta, Parisa Hosseinzadeh, Benjamin P. Brown, David Baker, David W. Christianson +1 more

Approximating conformational Boltzmann distributions with AlphaFold2 predictions

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.06.552168

N/A

0DataRank · unranked

6 citations

Richard A. Stein, Jens Meiler, Hassane S. Mchaourab, Benjamin P. Brown

Approximating Projections of Conformational Boltzmann Distributions with AlphaFold2 Predictions: Opportunities and Limitations

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.3c01081

N/A

0DataRank · unranked

32 citations

Richard A. Stein, Jens Meiler, Hassane S. Mchaourab, Benjamin P. Brown

Interpretable Deep-Learning p K a Prediction for Small Molecule Drugs via Atomic Sensitivity Analysis

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.4c01472

N/A

0DataRank · unranked

6 citations

Benjamin P. Brown, R. Brooke Jeffrey, Jens Meiler, Joseph A. DeCorte

Analysis of EGFR binding hotspots for design of new EGFR inhibitory biologics

Protein Science(2024)10.1002/pro.5141

N/A

0DataRank · unranked

10 citations

Bhuminder Singh, Adam W. Smith, Kaitlyn V. Ledwitch, Benjamin P. Brown, Christine M. Lovly +3 more

Computer-Aided Design and Biological Evaluation of Diazaspirocyclic D4R Antagonists

ACS Chemical Neuroscience(2024)10.1021/acschemneuro.4c00086

N/A

0DataRank · unranked

6 citations

Benjamin P. Brown, Daniel Schultz, Julie L. Engers, Valerie M. Kramlinger, Jens Meiler +2 more

Modeling protein conformational ensembles by guiding AlphaFold2 with Double Electron Electron Resonance (DEER) distance distributions

Nature Communications(2025)10.1038/s41467-025-62582-4

N/A

0DataRank · unranked

18 citations

Richard A. Stein, Te‐Yu Kao, Benjamin P. Brown, Hassane S. Mchaourab, Tianqi Wu

A generalizable deep learning framework for structure-based protein–ligand affinity ranking

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2508998122

N/A

0DataRank · unranked

4 citations

Benjamin P. Brown

Parameterizing non-canonical amino acids for cyclic peptide simulations

Methods in enzymology on CD-ROM/Methods in enzymology(2025)10.1016/bs.mie.2025.09.020

N/A

0DataRank · unranked

2 citations

Benjamin P. Brown, N Kithmini Wijesiri

Identification of asporin as a HER3 ligand exposes a therapeutic vulnerability in prostate cancer

JCI Insight(2025)10.1172/jci.insight.187151

N/A

0DataRank · unranked

2 citations

Hong Yuen Wong, Jorgen Jackson, Monika Antunovic, Brenda Rios, Evan Watkins +17 more

FakeRotLib: Expedient Noncanonical Amino Acid Parametrization in Rosetta

Journal of Chemical Information and Modeling(2025)10.1021/acs.jcim.5c01030

N/A

0DataRank · unranked

2 citations

Benjamin P. Brown, Jens Meiler, Eric W. Bell

Computationally Designed Cyclic Peptides Derived from an Antibody Loop Increase Breadth of Binding for Influenza Variants

Structure(2020)10.1016/j.str.2020.04.005

N/A

0DataRank · unranked

25 citations

Iuliia M. Gilchuk, Benjamin P. Brown, Nina G. Bozhanova, Rachel S. Nargi, Mattie Jensen +3 more

FakeRotLib: expedient non-canonical amino acid parameterization in Rosetta

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.27.640629

N/A

0DataRank · unranked

2 citations

Benjamin P. Brown, Jens Meiler, Eric W. Bell