Ruian Ke

MathematicsMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 47 papers. Top paper: “In vivo kinetics of SARS-CoV-2 infection and its relationship with a person’s infectiousness”.

In vivo kinetics of SARS-CoV-2 infection and its relationship with a person’s infectiousness

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2111477118

N/A

5.6DataRank · unranked

183 citations

Carolin Zitzmann, David D. Ho, Ruy M. Ribeiro, Alan S. Perelson, Ruian Ke

Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial

Nature Microbiology(2022)10.1038/s41564-022-01254-1

N/A

1.6DataRank · unranked

53 citations

Kara W Chew, Rinki Deo, James P. Flynn, James Regan, Charles R. Crain +51 more

Mechanistic Modeling of SARS‐CoV‐2 and Other Infectious Diseases and the Effects of Therapeutics

Clinical Pharmacology & Therapeutics(2021)10.1002/cpt.2160

N/A

0.705DataRank · unranked

109 citations

Ruian Ke, Alan S. Perelson

Modeling the emergence of viral resistance for SARS-CoV-2 during treatment with an anti-spike monoclonal antibody

PLoS Pathogens(2024)10.1371/journal.ppat.1011680

N/A

0.541DataRank · unranked

17 citations

Carolin Zitzmann, Kara W Chew, Davey M. Smith, Eric S. Daar, David A. Wohl +11 more

Daily sampling of early SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness

medRxiv(2021)10.1101/2021.07.12.21260208

N/A

0.533DataRank · unranked

34 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Agha Zeeshan Mirza, Madison Conte +33 more

The Effects of Human Immunodeficiency Virus Type 1 (HIV-1) Antigen-Expanded Specific T-Cell Therapy and Vorinostat on Persistent HIV-1 Infection in People With HIV on Antiretroviral Therapy

The Journal of Infectious Diseases(2024)10.1093/infdis/jiad423

N/A

0.483DataRank · unranked

13 citations

Patrick J. Hanley, Shane D. Falcinelli, JoAnn Kuruc, Susan Pedersen, Jennifer Kirchherr +16 more

Disrupting autorepression circuitry generates “open-loop lethality” to yield escape-resistant antiviral agents

Cell(2022)10.1016/j.cell.2022.04.022

N/A

0.396DataRank · unranked

13 citations

Michael Pablo, Marie Wolf, Daniel Rosas-Rivera, Giuliana Calia, Arjun J. Kumar +8 more

Influenza A viral burst size from thousands of infected single cells using droplet quantitative PCR (dqPCR)

PLoS Pathogens(2024)10.1371/journal.ppat.1012257

N/A

0.360DataRank · unranked

10 citations

Mallory M. Thomas, Emma K. Loveday, Dimitri A. Bikos, Steven Sanche, Ruian Ke +3 more

Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron

medRxiv(2022)10.1101/2022.06.15.22276436

N/A

0.104DataRank · unranked

1 citations

Emma E. Goldberg, Ruian Ke, Nicolas Hengartner, Ethan Romero-Severson, Christiaan H. van Dorp

Longitudinal assessment of diagnostic test performance over the course of acute SARS-CoV-2 infection

medRxiv(2021)10.1101/2021.03.19.21253964

N/A

0DataRank · unranked

29 citations

Laura Gibson, Pamela P. Martinez, Ruian Ke, Agha Zeeshan Mirza, Madison Conte +29 more

Emergence of SARS-CoV-2 Resistance with Monoclonal Antibody Therapy

medRxiv(2021)10.1101/2021.09.03.21263105

N/A

0DataRank · unranked

21 citations

Kara W Chew, Rinki Deo, James P. Flynn, James Regan, Charles R. Crain +23 more

In vivo kinetics of SARS-CoV-2 infection and its relationship with a person’s infectiousness

medRxiv(2021)10.1101/2021.06.26.21259581

N/A

0DataRank · unranked

18 citations

Carolin Zitzmann, David D. Ho, Ruy M. Ribeiro, Alan S. Perelson, Ruian Ke

Estimating the strength of selection for new SARS-CoV-2 variants

medRxiv(2021)10.1101/2021.03.29.21254233

N/A

0DataRank · unranked

9 citations

Emma E. Goldberg, Nicolas Hengartner, Ruian Ke, Ethan Romero-Severson, Christiaan H. van Dorp

A simple model of COVID-19 explains disease severity and the effect of treatments

medRxiv(2021)10.1101/2021.11.29.21267028

N/A

0DataRank · unranked

2 citations

Tyler Cassidy, P.-H. Chu, Alan S. Perelson, Ruy M. Ribeiro, Ruian Ke +1 more

Daily longitudinal sampling of SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness

Nature Microbiology(2022)10.1038/s41564-022-01105-z

N/A

0DataRank · unranked

222 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Agha Zeeshan Mirza, Madison Conte +34 more

Longitudinal Analysis of SARS-CoV-2 Vaccine Breakthrough Infections Reveals Limited Infectious Virus Shedding and Restricted Tissue Distribution

Open Forum Infectious Diseases(2022)10.1093/ofid/ofac192

N/A

0DataRank · unranked

65 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Chad J. Achenbach, Sally M. McFall +38 more

A simple model of COVID-19 explains disease severity and the effect of treatments

Scientific Reports(2022)10.1038/s41598-022-18244-2

N/A

0DataRank · unranked

26 citations

Tyler Cassidy, P.-H. Chu, Alan S. Perelson, Ruy M. Ribeiro, Ruian Ke +1 more

A deep learning approach to real-time HIV outbreak detection using genetic data

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010598

N/A

0DataRank · unranked

16 citations

Thomas Leitner, Ruian Ke, Michael D. Kupperman

Assessing the impact of human mobility to predict regional excess death in Ecuador

Scientific Reports(2022)10.1038/s41598-021-03926-0

N/A

0DataRank · unranked

8 citations

Irene Torres, Ethan Romero-Severson, Riya Mahesh, Nathaniel Ortega, Sarah Pungitore +3 more

AZD5582 plus SIV-specific antibodies reduce lymph node viral reservoirs in antiretroviral therapy-suppressed macaques

Nature Medicine(2023)10.1038/s41591-023-02570-7

N/A

0DataRank · unranked

47 citations

Sophia Sukkestad, Anna M. Horner, Margaret Neja, Zain Siddiqi, Chevaughn Waller +24 more

Making waves: Integrating wastewater surveillance with dynamic modeling to track and predict viral outbreaks

Water Research(2023)10.1016/j.watres.2023.120372

N/A

0DataRank · unranked

21 citations

Samantha Brozak, Bruce Pell, Jeremiah Oghuan, Anna Gitter, Tao Hu +7 more

Modeling the emergence of viral resistance for SARS-CoV-2 during treatment with an anti-spike monoclonal antibody

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.14.557679

N/A

0DataRank · unranked

5 citations

Carolin Zitzmann, Kara W Chew, Davey M. Smith, Eric S. Daar, David A. Wohl +11 more

Prolonged viral shedding from noninfectious individuals confounds wastewater-based epidemiology

medRxiv(2023)10.1101/2023.06.08.23291144

N/A

0DataRank · unranked

3 citations

Samantha Brozak, Bruce Pell, Stanca M. Ciupe, Ruian Ke, Ruy M. Ribeiro +6 more

Identifying Impacts of Contact Tracing on Epidemiological Inference from Phylogenetic Data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.30.567148

N/A

0DataRank · unranked

1 citations

Ruian Ke, Thomas Leitner, Michael D. Kupperman

Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial

UNC Libraries(2023)10.17615/s90c-rs31

N/A

0DataRank · unranked

0 citations

Jonathan Z. Li, Paul Klekotka, James P. Flynn, Joseph J. Eron, Justin Ritz +23 more

The kinetics of SARS-CoV-2 infection based on a human challenge study

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2406303121

N/A

0DataRank · unranked

33 citations

Ruy M. Ribeiro, Carolin Zitzmann, Tin Phan, Ruian Ke, Alan S. Perelson +1 more

How robust are estimates of key parameters in standard viral dynamic models?

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011437

N/A

0DataRank · unranked

29 citations

Ruian Ke, Ruy M. Ribeiro, Alan S. Perelson, Carolin Zitzmann

Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion

PLoS Pathogens(2024)10.1371/journal.ppat.1012236

N/A

0DataRank · unranked

10 citations

Jessica M. Conway, Nicole Pagane, Jasmine Kreig, Narmada Sambaturu, Sarafa A. Iyaniwura +5 more

CovTransformer: A transformer model for SARS-CoV-2 lineage frequency forecasting

Virus Evolution(2024)10.1093/ve/veae086

N/A

0DataRank · unranked

3 citations

Emma E. Goldberg, Michael D. Kupperman, Xitong Zhang, Youzuo Lin, Ruian Ke +1 more

Stoichiometry for entry and binding properties of the Env protein of R5 T cell-tropic HIV-1 and its evolutionary variant of macrophage-tropic HIV-1

mBio(2024)10.1128/mbio.00321-24

N/A

0DataRank · unranked

5 citations

Amy Sondgeroth, Amelia C. McCue, Nathan I. Nicely, Ashutosh Tripathy, E. Spielvogel +6 more

Influenza A Viral Burst Size from Thousands of Infected Single Cells Using Droplet Quantitative PCR (dqPCR)

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.23.581786

N/A

0DataRank · unranked

3 citations

Mallory M. Thomas, Emma K. Loveday, Dimitri A. Bikos, Steven Sanche, Ruian Ke +3 more

Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.03.592318

N/A

0DataRank · unranked

0 citations

Tin Phan, Jessica M. Conway, Nicole Pagane, Jasmine Kreig, Narmada Sambaturu +5 more

Stoichiometry for entry and binding properties of the Env protein of R5 T cell-tropic HIV-1 and its evolutionary variant of macrophage-tropic HIV-1.

UNC Libraries(2024)10.17615/hcw5-b115

N/A

0DataRank · unranked

0 citations

Karin Leiderman, Ruian Ke, Nathan I. Nicely, Matthew Moeser, Amy Sondgeroth +6 more

CD8 Lymphocyte Depletion Enhances the Latency Reversal Activity of the SMAC Mimetic AZD5582 in ART-Suppressed Simian Immunodeficiency Virus-Infected Rhesus Macaques

UNC Libraries(2024)10.17615/wmdx-2665

N/A

0DataRank · unranked

0 citations

Jeffrey D. Lifson, Guido Silvestri, Alyssa D. Brooks, Mirko Paiardini, Laura E. Liao +14 more

AZD5582 plus SIV-specific antibodies reduce lymph node viral reservoirs in antiretroviral therapy-suppressed macaques

UNC Libraries(2024)10.17615/peem-q524

N/A

0DataRank · unranked

0 citations

David S. Margolis, Vidisha Singh, Sherrie Jean, Margaret Neja, Guido Silvestri +24 more

CovTransformer: A transformer model for SARS-CoV-2 lineage frequency forecasting

UNC Libraries(2024)10.17615/0ep3-gf34

N/A

0DataRank · unranked

0 citations

Youzuo Lin, Emma E. Goldberg, Ruian Ke, Yinan Feng, Michael Kupperman +1 more

Post-recovery viral shedding shapes wastewater-based epidemiological inferences

Communications Medicine(2025)10.1038/s43856-025-00908-5

N/A

0DataRank · unranked

7 citations

Samantha Brozak, Bruce Pell, Stanca M. Ciupe, Ruian Ke, Ruy M. Ribeiro +6 more

Fast spread of COVID-19 in Europe and the US suggests the necessity of early, strong and comprehensive interventions

medRxiv(2020)10.1101/2020.04.04.20050427

N/A

0DataRank · unranked

58 citations

Steven Sanche, Ethan Romero-Severson, Nicolas Hengartner, Ruian Ke

The Effects of Human Immunodeficiency Virus Type 1 (HIV-1) Antigen-Expanded Specific T-Cell Therapy and Vorinostat on Persistent HIV-1 Infection in People With HIV on Antiretroviral Therapy

UNC Libraries(2025)10.17615/shqb-1g34

N/A

0DataRank · unranked

0 citations

JoAnn Kuruc, Jennifer Kirchherr, Cecilia M. Motta, Nilu Goonetilleke, Chris Lazarski +16 more

Estimating the reproductive number R 0 of SARS-CoV-2 in the United States and eight European countries and implications for vaccination

medRxiv(2020)10.1101/2020.07.31.20166298

N/A

0DataRank · unranked

10 citations

Steven Sanche, Ethan Romero-Severson, Nicolas Hengartner, Ruian Ke

NS5A inhibitors unmask differences in functional replicase complex half-life between different hepatitis C virus strains

UNC Libraries(2020)10.17615/ek6n-ys15

N/A

0DataRank · unranked

0 citations

Stanley M. Lemon, Daisuke Yamane, Tiffany Benzine, Ryan Brandt, Raffaele De Francesco +5 more

Longitudinal Assessment of Diagnostic Test Performance Over the Course of Acute SARS-CoV-2 Infection

The Journal of Infectious Diseases(2021)10.1093/infdis/jiab337

N/A

0DataRank · unranked

163 citations

Laura Gibson, Pamela P. Martinez, Ruian Ke, Agha Zeeshan Mirza, Madison Conte +29 more

Estimating the reproductive number R0 of SARS-CoV-2 in the United States and eight European countries and implications for vaccination

Journal of Theoretical Biology(2021)10.1016/j.jtbi.2021.110621

N/A

0DataRank · unranked

143 citations

Ethan Romero-Severson, Steven Sanche, Nicolas Hengartner, Ruian Ke

Excess deaths reveal the true spatial, temporal and demographic impact of COVID-19 on mortality in Ecuador

International Journal of Epidemiology(2021)10.1093/ije/dyab163

N/A

0DataRank · unranked

55 citations

Irene Torres, Ethan Romero-Severson, Riya Mahesh, Nathaniel Ortega, Sarah Pungitore +3 more

CD8 Lymphocyte Depletion Enhances the Latency Reversal Activity of the SMAC Mimetic AZD5582 in ART-Suppressed Simian Immunodeficiency Virus-Infected Rhesus Macaques

Journal of Virology(2021)10.1128/jvi.01429-20

N/A

0DataRank · unranked

31 citations

Laura E. Liao, Alyssa D. Brooks, Ruian Ke, Cameron Mattingly, Nils Schoof +14 more

Estimating the strength of selection for new SARS-CoV-2 variants

Nature Communications(2021)10.1038/s41467-021-27369-3

N/A

0DataRank · unranked

32 citations

Emma E. Goldberg, Nicolas Hengartner, Ruian Ke, Ethan Romero-Severson, Christiaan H. van Dorp

Longitudinal analysis of SARS-CoV-2 vaccine breakthrough infections reveal limited infectious virus shedding and restricted tissue distribution

medRxiv(2021)10.1101/2021.08.30.21262701

N/A

0DataRank · unranked

38 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Chad J. Achenbach, Sally M. McFall +38 more