Jef D. Boeke

Also affiliated with NYU Langone Health, Sam Ratulangi University, New York University, Brooklyn College

Agricultural and Biological SciencesBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

13.8Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Functional Characterization of the S. cerevisiae Genome by Gene Deletion and Parallel Analysis

Science(1999)10.1126/science.285.5429.901

Top 1%

13.8DataRank

Top 1%4037 citations

Daniel D. Shoemaker, Anna Astromoff, Hong Liang, Keith Anderson, Bruno Andre +47 more

Papers

Driven by 60 papers — median percentile 100. Top paper: “Functional Characterization of the S. cerevisiae Genome by Gene Deletion and Parallel Analysis”.

Functional Characterization of the S. cerevisiae Genome by Gene Deletion and Parallel Analysis

Science(1999)10.1126/science.285.5429.901

Top 1%

13.8DataRank

Top 1%4037 citations

Daniel D. Shoemaker, Anna Astromoff, Hong Liang, Keith Anderson, Bruno Andre +47 more

Lysine Succinylation and Lysine Malonylation in Histones

Molecular & Cellular Proteomics(2012)10.1074/mcp.m111.015875

N/A

12.9DataRank · unranked

609 citations

Junbiao Dai, Lunzhi Dai, Minjia Tan, Zhongyi Cheng, Yeming Wu +3 more

Multiple Molecular Determinants for Retrotransposition in a Primer tRNA

Molecular and Cellular Biology(1995)10.1128/mcb.15.1.217

N/A

4.5DataRank · unranked

71 citations

Karen B. Chapman, Vit Lauermann, Daniel F. Voytas, Stefan U. ÅStröm, Ulrich von Pawel-Rammingen +3 more

Regulation of the Dot1 histone H3K79 methyltransferase by histone H4K16 acetylation

Science(2021)10.1126/science.abc6663

N/A

3.0DataRank · unranked

115 citations

Pablo De Ioannes, Miao Wang, David M. Truong, Rachel Lee, Jean‐Paul Armache +3 more

Integrative multi-omics profiling in human decedents receiving pig heart xenografts

Nature Medicine(2024)10.1038/s41591-024-02972-1

N/A

2.1DataRank · unranked

56 citations

Brian D. Piening, Maedeh Mohebnasab, Bo Xia, Chenchen Zhu, Jeffrey Stern +54 more

Plus strand strong‐stop DNA transfer in yeast Ty retrotransposons

The EMBO Journal(1997)10.1093/emboj/16.21.6603

N/A

2.0DataRank · unranked

31 citations

Jef D. Boeke, Vit Lauermann

On the genetic basis of tail-loss evolution in humans and apes

Nature(2024)10.1038/s41586-024-07095-8

N/A

1.9DataRank · unranked

113 citations

Weimin Zhang, Guisheng Zhao, Xinru Zhang, Jiangshan Bai, Ran Brosh +15 more

Cellular dynamics in pig-to-human kidney xenotransplantation

Med(2024)10.1016/j.medj.2024.05.003

N/A

1.2DataRank · unranked

43 citations

Weimin Zhang, Binghan Zheng, Brendan R. Camellato, Jeffrey Stern, Ziyan Lin +16 more

Genetic interaction mapping informs integrative structure determination of protein complexes

Science(2020)10.1126/science.aaz4910

N/A

1.1DataRank · unranked

36 citations

Ignacia Echeverria, Stefan Bohn, Peter Cimermančič, Anthony L. Shiver, Richard Alexander +23 more

Systems genomics in age-related macular degeneration

Experimental Eye Research(2022)10.1016/j.exer.2022.109248

N/A

1.1DataRank · unranked

40 citations

Robert F. Mullins, Luz D. Orozco, Andrew P. Voigt, Hsu-Hsin Chen, Tobias Strunz +16 more

Biotinylation of lysine method identifies acetylated histone H3 lysine 79 in Saccharomyces cerevisiae as a substrate for Sir2

Proceedings of the National Academy of Sciences(2012)10.1073/pnas.1121471109

N/A

1.1DataRank · unranked

22 citations

Stephen Swatkoski, Katherine L. Fiedler, Jef D. Boeke, Robert J. Cotter, Cynthia Wolberger +1 more

Sc3.0: revamping and minimizing the yeast genome

Genome Biology(2020)10.1186/s13059-020-02130-z

N/A

0.998DataRank · unranked

43 citations

Jef D. Boeke, Zhouqing Luo, Shuangying Jiang, Yizhi Cai, Junbiao Dai

Active Transposition in Genomes

Annual Review of Genetics(2012)10.1146/annurev-genet-110711-155616

N/A

0.913DataRank · unranked

440 citations

Kathleen H. Burns, Jef D. Boeke, Cheng Ran Lisa Huang

Synthetic reversed sequences reveal default genomic states

Nature(2024)10.1038/s41586-024-07128-2

N/A

0.878DataRank · unranked

32 citations

Ran Brosh, Hannah J. Ashe, Matthew T. Maurano, Jef D. Boeke, Brendan R. Camellato

LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2115999119

N/A

0.709DataRank · unranked

112 citations

Xuya Wang, Carlos Mendez‐Dorantes, Paolo Mita, Song Cao, Mark Grivainis +6 more

Sirt6 regulates lifespan in Drosophila melanogaster

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2111176119

N/A

0.587DataRank · unranked

49 citations

Jason G. Wood, Evan Mizerak, Samuel Hinthorn, Julianna Liu, Matthew Finn +11 more

Mouse genome rewriting and tailoring of three important disease loci

Nature(2023)10.1038/s41586-023-06675-4

N/A

0.571DataRank · unranked

44 citations

Ilona Golynker, Ran Brosh, Álvaro Fajardo, Yinan Zhu, Aleksandra Wudzinska +16 more

Human transposon insertion profiling by sequencing (TIPseq) to map LINE-1 insertions in single cells

Philosophical Transactions of the Royal Society B Biological Sciences(2020)10.1098/rstb.2019.0335

N/A

0.533DataRank · unranked

10 citations

Zuojian Tang, Jared P. Steranka, Lindsay M. Payer, Jef D. Boeke, David L. Keefe +4 more

Debugging and consolidating multiple synthetic chromosomes reveals combinatorial genetic interactions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.11.486913

N/A

0.470DataRank · unranked

22 citations

Camila Coelho, Amanda L. Hughes, Luciana Lazar‐Stefanita, Sandy Yang, Aaron N. Brooks +17 more

Multi-omics analysis of a pig-to-human decedent kidney xenotransplant

Nature(2025)10.1038/s41586-025-09846-7

N/A

0.437DataRank · unranked

16 citations

Brian D. Piening, Alexa K. Dowdell, Maedeh Mohebnasab, Simon H. Williams, Alexey Stukalov +71 more

Two differentially stable rDNA loci coexist on the same chromosome and form a single nucleolus

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2219126120

N/A

0.416DataRank · unranked

15 citations

Jingchuan Luo, Max A. B. Haase, Weimin Zhang, Jef D. Boeke, Luciana Lazar‐Stefanita

Integrative Multi-omic Profiling of Two Human Decedents Receiving Pig Heart Xenografts Reveals Strong Perturbations in Early Immune-Cell and Cellular Metabolism Responses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.05.543406

N/A

0.208DataRank · unranked

3 citations

Brian D. Piening, Bo Xia, Chenchen Zhu, Jeffrey Stern, Weimin Zhang +45 more

Engineered transcription-associated Cas9 targeting in eukaryotic cells

Nature Communications(2024)10.1038/s41467-024-54629-9

N/A

0.135DataRank · unranked

1 citations

Manjunatha Kogenaru, Sarah Keegan, Max A. B. Haase, Larisa Kagermazova, Mauricio A. Arias +7 more

Synthetic chromosome fusion: Effects on mitotic and meiotic genome structure and function

Cell Genomics(2023)10.1016/j.xgen.2023.100439

N/A

0DataRank · unranked

24 citations

Luís A. Vale-Silva, Adhithi R. Raghavan, Guillaume Mercy, Jonna Heldrich, Xiaoji Sun +45 more

CREEPY: CRISPR-mediated editing of synthetic episomes in yeast

Nucleic Acids Research(2023)10.1093/nar/gkad491

N/A

0DataRank · unranked

23 citations

Camila Coelho, Stephanie Lauer, Miłosz Majewski, Jon M. Laurent, Ran Brosh +2 more

Longitudinal scRNA-seq analysis in mouse and human informs optimization of rapid mouse astrocyte differentiation protocols

Nature Neuroscience(2023)10.1038/s41593-023-01424-2

N/A

0DataRank · unranked

18 citations

David Labib, Theodore Fisher, Ran Brosh, Nicolette Pirjanian, Anne E Marchildon +4 more

Condensation of LINE-1 is critical for retrotransposition

eLife(2023)10.7554/elife.82991

N/A

0DataRank · unranked

31 citations

Sarah Keegan, Farida Ettefa, Lance T. Denes, Jef D. Boeke, Liam J. Holt +1 more

LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5′ single-cell RNA-Seq

Nucleic Acids Research(2023)10.1093/nar/gkad049

N/A

0DataRank · unranked

28 citations

Larisa Kagermazova, Nicole Doudican, Nicholas Frazzette, Efiyenia Ismini Kaparos, Shane A. Evans +7 more

Genomic context sensitizes regulatory elements to genetic disruption

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.02.547201

N/A

0DataRank · unranked

2 citations

Weimin Zhang, Gwen Ellis, Yinan Zhu, Hannah J. Ashe, André M. Ribeiro-dos-Santos +6 more

Genomic context sensitizes regulatory elements to genetic disruption

Molecular Cell(2024)10.1016/j.molcel.2024.04.013

N/A

0DataRank · unranked

16 citations

Weimin Zhang, Gwen Ellis, Yinan Zhu, Hannah J. Ashe, André M. Ribeiro-dos-Santos +6 more

macroH2A1 drives nucleosome dephasing and genome instability in histone humanized yeast

Cell Reports(2024)10.1016/j.celrep.2024.114472

N/A

0DataRank · unranked

5 citations

Luciana Lazar‐Stefanita, Guðjón Ólafsson, Aleksandra Wudzinska, Michael Shen, David M. Truong +2 more

Selective Depletion of Cancer Cells with Extrachromosomal DNA via Lentiviral Infection

Cancer Research Communications(2025)10.1158/2767-9764.crc-25-0144

N/A

0DataRank · unranked

1 citations

Amit D. Gujar, Dacheng Zhao, Kentaro Suina, Xue Jin, Katharina Pardon +8 more

Ancient co-option of LTR retrotransposons as yeast centromeres

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.25.647736

N/A

0DataRank · unranked

3 citations

Luciana Lazar‐Stefanita, Lyam Baudry, Aleksandra Wudzinska, Xiaofan Zhou, Antonis Rokas +4 more

Genome writing to dissect consequences of SVA retrotransposon disease X-Linked Dystonia Parkinsonism

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.07.680816

N/A

0DataRank · unranked

2 citations

Yu Zhao, Priya Prakash, Heather L. Appleby, Kelly Barriball, Simona Capponi +17 more

Myelin pathology is a key feature of X-linked Dystonia Parkinsonism

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.07.680990

N/A

0DataRank · unranked

1 citations

Kerry C. Limberg, Weimin Zhang, Yu Zhao, Klaudia Laborc, Anna O'Keeffe +18 more

Assemblatron: An Automated Workflow for High-Throughput Assembly of Big-DNA Libraries

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.30.662359

N/A

0DataRank · unranked

0 citations

Luisa F. Quispe, Klaus-Peter Rühmann, James A. Martin, Jordan M. Welker, Mingyu Li +5 more

A shotgun approach for highly multiplexed mammalian metabolic engineering

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.08.663766

N/A

0DataRank · unranked

0 citations

Sara Sessa, Tori Rodrick, Drew R. Jones, David Fenyö, Sudarshan Pinglay +2 more

Enhancer activation from transposable elements in extrachromosomal DNA

Nature Cell Biology(2025)10.1038/s41556-025-01788-6

N/A

0DataRank · unranked

13 citations

Sedona E. Murphy, Matthew G. Jones, Quanming Shi, Aarohi Bhargava-Shah, Christy Luong +14 more

LINE-1 expression in cancer correlates with DNA damage response, copy number variation, and cell cycle progression

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.26.174052

N/A

0DataRank · unranked

3 citations

Xuya Wang, Paolo Mita, Song Cao, Mark Grivainis, Li Ding +4 more

Alternative splicing is a developmental switch for hTERT expression

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.02.022087

N/A

0DataRank · unranked

2 citations

Andrew Bazley, Michael Shen, Jef D. Boeke, Sharon A. Savage, Agnel Sfeir +1 more

EUAdb: a resource for COVID-19 test development

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.30.228890

N/A

0DataRank · unranked

0 citations

Henry W. Shaffer, Karin Kiontke, Jon M. Laurent, Ronald Zambrano, Jef D. Boeke +2 more

LINE-1 ORF1p RIP-seq reveals widespread association with p-body enriched mRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.20.259424

N/A

0DataRank · unranked

0 citations

Wilson McKerrow, Paolo Mita, Jef D. Boeke, Susan K. Logan, David Fenyö +1 more

RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs

Mobile DNA(2021)10.1186/s13100-021-00233-3

N/A

0DataRank · unranked

36 citations

Wilson McKerrow, Paolo Mita, Jef D. Boeke, Susan K. Logan, David Fenyö +1 more

Unbiased proteomic mapping of the LINE-1 promoter using CRISPR Cas9

Mobile DNA(2021)10.1186/s13100-021-00249-9

N/A

0DataRank · unranked

12 citations

Paolo Mita, Xiaoji Sun, Susan Ha, Nikita Vasilyev, Zev Leopold +4 more

EUAdb: A resource for COVID-19 test development and comparison

PLoS ONE(2021)10.1371/journal.pone.0255417

N/A

0DataRank · unranked

1 citations

Henry W. Shaffer, Karin Kiontke, Jon M. Laurent, Ronald Zambrano, Mariah Daley +3 more

The genetic basis of tail-loss evolution in humans and apes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.14.460388

N/A

0DataRank · unranked

31 citations

Weimin Zhang, Aleksandra Wudzinska, Emily Huang, Ran Brosh, Maayan Pour +7 more

The genetic basis of tail-loss evolution in humans and apes

Research Square(2021)10.21203/rs.3.rs-907475/v1

N/A

0DataRank · unranked

1 citations

Bo Xia, Weimin Zhang, Aleksandra Wudzinska, Emily Huang, Ran Brosh +7 more

A conditional counterselectable Piga knockout in mouse embryonic stem cells for advanced genome writing applications

iScience(2022)10.1016/j.isci.2022.104438

N/A

0DataRank · unranked

3 citations

Ran Brosh, Laura H. McCulloch, Yinan Zhu, Hannah J. Ashe, Gwen Ellis +5 more

Condensation of LINE-1 is required for retrotransposition

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.11.487880

N/A

0DataRank · unranked

9 citations

Jef D. Boeke, Liam J. Holt, Srinjoy Sil

Genomic analysis of a synthetic reversed sequence reveals default chromatin states in yeast and mammalian cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.22.496726

N/A

0DataRank · unranked

7 citations

Ran Brosh, Matthew T. Maurano, Jef D. Boeke, Brendan R. Camellato

Synthetic regulatory genomics uncovers enhancer context dependence at the Sox2 locus

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.20.495832

N/A

0DataRank · unranked

6 citations

Camila Coelho, André M. Ribeiro-dos-Santos, Gwen Ellis, Megan S. Hogan, Hannah J. Ashe +7 more

Episomal editing of synthetic constructs in yeast using CRISPR

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.21.496881

N/A

0DataRank · unranked

2 citations

Camila Coelho, Stephanie Lauer, Jon M. Laurent, Ran Brosh, Jef D. Boeke +1 more

Stable twin rDNA loci form a single nucleolus in brewer’s yeast

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.14.496147

N/A

0DataRank · unranked

1 citations

Jingchuan Luo, Max A. B. Haase, Weimin Zhang, Jef D. Boeke, Luciana Lazar‐Stefanita

Germline Transmission of a Circular Human Artificial Chromosome in the Mouse

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.22.496420

N/A

0DataRank · unranked

1 citations

Leslie A. Mitchell, Ran Brosh, Nazario Bosco, Francesco Boccalatte, Ioannis Aifantis +4 more

MenDEL: PCR Primer Design as Constrained Optimization Process

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.26.496474

N/A

0DataRank · unranked

1 citations

Leslie A. Mitchell, Antonio Vela Gartner, David Fenyö, Jef D. Boeke, Sergei German

MenDEL: automated search of BAC sets covering long DNA regions of interest

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.26.496179

N/A

0DataRank · unranked

1 citations

Sudarshan Pinglay, Brendan R. Camellato, David Fenyö, Jef D. Boeke, Sergei German

Super-enhancers include classical enhancers and facilitators to fully activate gene expression

Cell(2023)10.1016/j.cell.2023.11.030

N/A

0DataRank · unranked

186 citations

Helena S. Francis, Alexandra Rampasekova, Brendan R. Camellato, Leslie A. Mitchell, Rosa J. Stolper +6 more

Debugging and consolidating multiple synthetic chromosomes reveals combinatorial genetic interactions

Cell(2023)10.1016/j.cell.2023.09.025

N/A

0DataRank · unranked

102 citations

Camila Coelho, Amanda L. Hughes, Luciana Lazar‐Stefanita, Sandy Yang, Aaron N. Brooks +19 more

Design, construction, and functional characterization of a tRNA neochromosome in yeast

Cell(2023)10.1016/j.cell.2023.10.015

N/A

0DataRank · unranked

81 citations

Roy Walker, Shuangying Jiang, Aaron N. Brooks, Yun Wang, Carolin A. Müller +30 more

Synthetic regulatory genomics uncovers enhancer context dependence at the Sox2 locus

Molecular Cell(2023)10.1016/j.molcel.2023.02.027

N/A

0DataRank · unranked

70 citations

Camila Coelho, André M. Ribeiro-dos-Santos, Gwen Ellis, Megan S. Hogan, Hannah J. Ashe +7 more

Jef D. Boeke

Indexed papers

Top data-sharing exemplar

Papers