Andreas Gnirke

Broad Institute

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.698Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis

PLoS Biology(2024)10.1371/journal.pbio.3002682

Top 39%

0.490DataRank

Top 39%20 citations

Márcia David‐Palma, Terrance Shea, Katharine Bowers, Sage M. Smith, Arman W. Mohammad +7 more

Papers

Driven by 29 papers — median percentile 18. Top paper: “Discovery of Candidate DNA Methylation Cancer Driver Genes”.

Discovery of Candidate DNA Methylation Cancer Driver Genes

Cancer Discovery(2021)10.1158/2159-8290.cd-20-1334

N/A

2.1DataRank · unranked

72 citations

Loïc Renaud, Ronan Chaligné, Johannes Bloehdorn, Eugen Tausch, Daniel Mertens +14 more

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Nature Biotechnology(2011)10.1038/nbt.1883

N/A

1.5DataRank · unranked

22458 citations

Brian J. Haas, Moran Yassour, Joshua Z. Levin, Ido Amit, Xian Adiconis +19 more

Genome-scale DNA methylation maps of pluripotent and differentiated cells

Nature(2008)10.1038/nature07107

N/A

1.2DataRank · unranked

2535 citations

Tarjei S. Mikkelsen, Hongcang Gu, Marius Wernig, Sachet A. Shukla, Xiaolan Zhang +8 more

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

Nature Biotechnology(2009)10.1038/nbt.1523

N/A

1.1DataRank · unranked

1502 citations

Alexandre Melnikov, Jared Maguire, Peter Rogov, Emily M LeProust, William Brockman +11 more

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

Nature(2013)10.1038/nature12172

N/A

1.1DataRank · unranked

1301 citations

Rahul Satija, Xian Adiconis, Rona S. Gertner, Jellert T. Gaublomme, Raktima Raychowdhury +14 more

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

Nature Biotechnology(2010)10.1038/nbt.1633

N/A

1.1DataRank · unranked

1265 citations

Manuel Garber, Joshua Z. Levin, Julie Donaghey, James Robinson, Xian Adiconis +9 more

A unique regulatory phase of DNA methylation in the early mammalian embryo

Nature(2012)10.1038/nature10960

N/A

1.0DataRank · unranked

975 citations

Michelle M. Chan, Tarjei S. Mikkelsen, Hongcang Gu, Andreas Gnirke, Prisca Liberali +2 more

Comprehensive comparative analysis of strand-specific RNA sequencing methods

Nature Methods(2010)10.1038/nmeth.1491

N/A

0.996DataRank · unranked

765 citations

Moran Yassour, Xian Adiconis, Irene Newsham, Nir Friedman, Andreas Gnirke +3 more

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay

Nature Biotechnology(2012)10.1038/nbt.2137

N/A

0.978DataRank · unranked

677 citations

Anand Murugan, Xiaolan Zhang, Tiberiu Tesileanu, Li Wang, Peter Rogov +9 more

Preneoplastic Alterations Define CLL DNA Methylome and Persist through Disease Progression and Therapy

Blood Cancer Discovery(2020)10.1158/2643-3230.bcd-19-0058

N/A

0.946DataRank · unranked

30 citations

Anat Biran, Noelia Purroy, Camilla K. Lemvigh, Kendell Clement, Michaela Gruber +22 more

Comparative analysis of RNA sequencing methods for degraded or low-input samples

Nature Methods(2013)10.1038/nmeth.2483

N/A

0.946DataRank · unranked

549 citations

Diego Borges-Rivera, Rahul Satija, David S. DeLuca, Michele A. Busby, Aaron M. Berlin +11 more

Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites

Proceedings of the National Academy of Sciences(2007)10.1073/pnas.0701811104

N/A

0.864DataRank · unranked

316 citations

Tarjei S. Mikkelsen, Andreas Gnirke, Broad Institute Sequencing Platform and Whole Genome Assembly Team, Sharon L. R. Kardia, Matthew E. Hurles +2 more

Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing

Nature Genetics(2013)10.1038/ng.2543

N/A

0.862DataRank · unranked

313 citations

Andreas Gnirke, David B. Jaffe, Veronika Barešová, Nathalie Pochet, Brendan Blumenstiel +43 more

Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample

Cell(2024)10.1016/j.cell.2024.06.002

N/A

0.858DataRank · unranked

45 citations

Olga Dudchenko, Juan Antonio Rodríguez, Cynthia Pérez Estrada, Marianne Dehasque, Claudia Fontsere +51 more

Development and evaluation of RNA-seq methods

Genome Biology(2010)10.1186/gb-2010-11-s1-p26

N/A

0.833DataRank · unranked

9 citations

Xian Adiconis, Moran Yassour, Dawn Thompson, Mitchell Guttman, Lin Fan +7 more

Activation of Notch and Myc Signaling via B-cell–Restricted Depletion of Dnmt3a Generates a Consistent Murine Model of Chronic Lymphocytic Leukemia

Cancer Research(2021)10.1158/0008-5472.can-21-1273

N/A

0.749DataRank · unranked

22 citations

Shanye Yin, Helene Kretzmer, Elisa Ten Hacken, Salma Parvin, Fabienne Lucas +26 more

TETs compete with DNMT3 activity in pluripotent cells at thousands of methylated somatic enhancers

Nature Genetics(2020)10.1038/s41588-020-0639-9

N/A

0.719DataRank · unranked

120 citations

Eunmi J. Jung, Alexandra L. Mattei, Nina Bailly, Jing Liao, Éric Martin +9 more

Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to the graft-versus-leukemia effect

Science Translational Medicine(2020)10.1126/scitranslmed.abb7661

N/A

0.705DataRank · unranked

24 citations

Christina Ennis, Vinhkhang N. Nguyen, Satyen H. Gohil, Kendell Clement, Sachet A. Shukla +22 more

Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis

PLoS Biology(2024)10.1371/journal.pbio.3002682

Top 39%

0.490DataRank

Top 39%20 citations

Márcia David‐Palma, Terrance Shea, Katharine Bowers, Sage M. Smith, Arman W. Mohammad +7 more

Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection

Nature Communications(2024)10.1038/s41467-024-53829-7

N/A

0.414DataRank · unranked

9 citations

Timothy J. Straub, Colin J. Worby, Hayden C. Metsky, Andreas Gnirke, Ryan A. Bronson +13 more

DNA methylation is a key mechanism for maintaining monoallelic expression on autosomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.20.954834

N/A

0.360DataRank · unranked

10 citations

Denis L. J. Lafontaine, Sébastien Vigneau, С. В. Виноградова, Asia Mendelevich, Kyomi J. Igarashi +10 more

Establishing methods to monitor H5N1 influenza virus in dairy cattle milk

medRxiv(2024)10.1101/2024.12.04.24318491

N/A

0.241DataRank · unranked

4 citations

Andreas Gnirke, Kyle McMahon, Michael R. Gomez, Liam Stenson, Charelisse Guevara-Reyes +25 more

Erratum: Corrigendum: Comparative analysis of RNA sequencing methods for degraded or low-input samples

Nature Methods(2014)10.1038/nmeth0214-210e

N/A

0.212DataRank · unranked

2 citations

Diego Borges-Rivera, Rahul Satija, David S. DeLuca, Michele A. Busby, Aaron M. Berlin +11 more

Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.30.547175

Top 65%

0.208DataRank

Top 65%3 citations

Olga Dudchenko, Juan Antonio Rodríguez, Cynthia Pérez Estrada, Marianne Dehasque, Claudia Fontsere +27 more

Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.29.582780

N/A

0.119DataRank · unranked

1 citations

Timothy J. Straub, Colin J. Worby, Hayden C. Metsky, Andreas Gnirke, Ryan A. Bronson +13 more

Comparative genomics of Cryptococcus and Kwoniella reveals pathogenesis evolution and contrasting karyotype dynamics via intercentromeric recombination or chromosome fusion

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.27.573464

Top 100%

0DataRank

Top 100%0 citations

Márcia David‐Palma, Terrance Shea, Katharine Bowers, Sage M. Smith, Arman W. Mohammad +7 more

Data from Activation of Notch and Myc Signaling via B-cell–Restricted Depletion of Dnmt3a Generates a Consistent Murine Model of Chronic Lymphocytic Leukemia

(2023)10.1158/0008-5472.c.6513540.v1

N/A

0DataRank · unranked

0 citations

Shanye Yin, Helene Kretzmer, Elisa Ten Hacken, Salma Parvin, Fabienne Lucas +26 more

Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen

Microbiology Resource Announcements(2023)10.1128/mra.00338-23

Top 100%

0DataRank

Top 100%0 citations

Jason T. Mohabir, Tania Kurbessoian, Brittany Berdy, J Fontaine, Andreas Gnirke +4 more

Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to graft-versus-leukemia

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.09.033555

N/A

0DataRank · unranked

0 citations

Christina Ennis, Vinhkhang N. Nguyen, Kendell Clement, Satyen H. Gohil, Sachet A. Shukla +20 more

Andreas Gnirke

Indexed papers

Top data-sharing exemplar

Papers