🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Rui Yin

Soochow University

ORCID: 0000-0001-5330-8306

Also affiliated with Huzhou Central Hospital, Tsinghua–Berkeley Shenzhen Institute, First Affiliated Hospital of Soochow University

Biochemistry, Genetics and Molecular BiologyMedicineEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
7.5Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

CoV3D: a database of high resolution coronavirus protein structures

Nucleic Acids Research(2020)10.1093/nar/gkaa731
Top 8%
2.7DataRank
Top 8%81 citations

Johnathan D. Guest, Rui Yin, Jared Adolf‐Bryfogle, William R. Schief, Brian G. Pierce +1 more

Papers

Driven by 21 papers — median percentile 90. Top paper: “CoV3D: a database of high resolution coronavirus protein structures”.

CoV3D: a database of high resolution coronavirus protein structures

Nucleic Acids Research(2020)10.1093/nar/gkaa731
Top 8%
2.7DataRank
Top 8%81 citations

Johnathan D. Guest, Rui Yin, Jared Adolf‐Bryfogle, William R. Schief, Brian G. Pierce +1 more

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26609
Top 11%
1.9DataRank
Top 11%81 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment

Utrecht University Repository (Utrecht University)(2023)10.22541/au.168888815.53957253/v1
Top 36%
0.540DataRank
Top 36%17 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Structural Features of Antibody-Peptide Recognition

Frontiers in Immunology(2022)10.3389/fimmu.2022.910367
N/A
0.510DataRank · unranked
29 citations

Rui Yin, Gilad Ofek, Brian G. Pierce, Jessica H. Lee

Evaluation of AlphaFold modeling for elucidation of nanobody–peptide epitope interactions

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110268
N/A
0.324DataRank · unranked
6 citations

Swarnali Roy, Shubhra Jyoti Saha, Gengxiang Zhao, Rashmi Kumariya, Brendan A. Creemer +5 more

Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors

Nature Communications(2022)10.1038/s41467-021-27669-8
N/A
0DataRank · unranked
45 citations

A. V. Kolesnikov, Rui Yin, Johnathan D. Guest, Ragul Gowthaman, Anton Shmelev +6 more

Evaluation of AlphaFold antibody–antigen modeling with implications for improving predictive accuracy

Protein Science(2023)10.1002/pro.4865
N/A
0DataRank · unranked
132 citations

Brian G. Pierce, Rui Yin

TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning

Nucleic Acids Research(2023)10.1093/nar/gkad356
N/A
0DataRank · unranked
107 citations

Helder Veras Ribeiro Filho, Valerie C. L. Lin, Ragul Gowthaman, Melyssa Cheung, Brian G. Pierce +1 more

Structure of engineered hepatitis C virus E1E2 ectodomain in complex with neutralizing antibodies

Nature Communications(2023)10.1038/s41467-023-39659-z
N/A
0DataRank · unranked
34 citations

Benjamin M. Janus, Rui Yin, Ruixue Wang, Johnathan D. Guest, Edwin Pozharski +7 more

SARS-CoV-2 infection establishes a stable and age-independent CD8+ T cell response against a dominant nucleocapsid epitope using restricted T cell receptors

Nature Communications(2023)10.1038/s41467-023-42430-z
N/A
0DataRank · unranked
18 citations

Joseph Chen, Jiangyuan Li, D. Travis Gallagher, Jian Lü, Daichao Wu +33 more

Evaluation of AlphaFold Antibody-Antigen Modeling with Implications for Improving Predictive Accuracy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.05.547832
N/A
0DataRank · unranked
25 citations

Brian G. Pierce, Rui Yin

Preexisting Skin-Resident CD8 and γδ T-cell Circuits Mediate Immune Response in Merkel Cell Carcinoma and Predict Immunotherapy Efficacy

Cancer Discovery(2024)10.1158/2159-8290.cd-23-0798
N/A
0DataRank · unranked
25 citations

Yue Zhang, Oscar E. Ospina, Matt D. Nichols, Victoria A. Chu, Álvaro de Mingo Pulido +31 more

A comprehensive engineering strategy improves potency and manufacturability of a near pan-neutralizing antibody against HIV

Structure(2025)10.1016/j.str.2025.04.016
N/A
0DataRank · unranked
5 citations

Abdolrahim Abbasi, Zahra Rikhtegaran Tehrani, Christine C. Siska, Rutilio H. Clark, Woo Chi +41 more

Cryo-EM structures of HCV E2 glycoprotein bound to neutralizing and non-neutralizing antibodies determined using bivalent Fabs as fiducial markers

Communications Biology(2025)10.1038/s42003-025-08239-w
N/A
0DataRank · unranked
4 citations

S.S. Karade, S. Saif Hasan, Rui Yin, Liqun Jiang, Yanxin Liu +9 more

AlphaFold and Docking Approaches for Antibody–Antigen and Other Targets: Insights From CAPRI Rounds 47–55

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.26801
N/A
0DataRank · unranked
3 citations

Minjae Park, Rui Yin, Johnathan D. Guest, Brian G. Pierce, Ragul Gowthaman

Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009380
N/A
0DataRank · unranked
16 citations

Johnathan D. Guest, Ghazaleh Taherzadeh, Ragul Gowthaman, Ipsa Mittra, Jane Quackenbush +2 more

Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.23.465575
N/A
0DataRank · unranked
25 citations

Brandon Y. Feng, Amitabh Varshney, Brian G. Pierce, Rui Yin

Structural basis for recognition of two HLA-A2-restricted SARS-CoV-2 spike epitopes by public and private T cell receptors

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.454232
N/A
0DataRank · unranked
2 citations

A. V. Kolesnikov, Rui Yin, Johnathan D. Guest, Ragul Gowthaman, Anton Shmelev +5 more

Structural basis for recognition of two HLA-A2-restricted SARS-CoV-2 spike epitopes by public and private T cell receptors

Research Square(2021)10.21203/rs.3.rs-726298/v1
N/A
0DataRank · unranked
1 citations

A. V. Kolesnikov, Rui Yin, Johnathan D. Guest, Ragul Gowthaman, Anton Shmelev +5 more

Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants

Protein Science(2022)10.1002/pro.4379
N/A
0DataRank · unranked
360 citations

Brandon Y. Feng, Amitabh Varshney, Brian G. Pierce, Rui Yin