🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Emil Alexov

Greenwood Genetic Center

ORCID: 0000-0001-5346-0156

Also affiliated with Clemson University

Biochemistry, Genetics and Molecular BiologyMaterials SciencePhysics and AstronomyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile
1.2Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

PKAD-2: New Entries and Expansion of Functionalities of the Database of Experimentally Measured pKa’s of Proteins

Journal of Computational Biophysics and Chemistry(2023)10.1142/s2737416523500230
Top 22%
0.940DataRank
Top 22%25 citations

Ananta Bastola, Emil Alexov, Nicolas Ancona

Papers

Driven by 26 papers — median percentile 38. Top paper: “PKAD-2: New Entries and Expansion of Functionalities of the Database of Experimentally Measured pKa’s of Proteins”.

PKAD-2: New Entries and Expansion of Functionalities of the Database of Experimentally Measured pKa’s of Proteins

Journal of Computational Biophysics and Chemistry(2023)10.1142/s2737416523500230
Top 22%
0.940DataRank
Top 22%25 citations

Ananta Bastola, Emil Alexov, Nicolas Ancona

SAAMBE-3D: Predicting Effect of Mutations on Protein–Protein Interactions

International Journal of Molecular Sciences(2020)10.3390/ijms21072563
N/A
0.727DataRank · unranked
126 citations

Gen Li, Adithya Krishna Murthy, Siqi Liang, Robert Fragoza, Haiyuan Yu +2 more

SAAMBE-SEQ: a sequence-based method for predicting mutation effect on protein–protein binding affinity

Bioinformatics(2020)10.1093/bioinformatics/btaa761
N/A
0.568DataRank · unranked
43 citations

Swagata Pahari, Adithya Krishna Murthy, Siqi Liang, Robert Fragoza, Haiyuan Yu +2 more

Electrostatics in Computational Biophysics and Its Implications for Disease Effects

International Journal of Molecular Sciences(2022)10.3390/ijms231810347
N/A
0.464DataRank · unranked
21 citations

Pitambar Poudel, Emil Alexov, Lin Li, Shengjie Sun

On the linkage of thermodynamics and pathogenicity

Current Opinion in Structural Biology(2023)10.1016/j.sbi.2023.102572
N/A
0.385DataRank · unranked
12 citations

Sanjeev Ghimire, Bohua Wu, Emil Alexov, Preeti Pandey

A regularization approach for solving the super-Gaussian Poisson-Boltzmann model with heterogeneous dielectric functions

Journal of Computational Physics(2022)10.1016/j.jcp.2022.111340
N/A
0.360DataRank · unranked
10 citations

Yuanzhen Shao, Emil Alexov, Shan Zhao, Siwen Wang

An Ensemble Approach to Predict the Pathogenicity of Synonymous Variants

Genes(2020)10.3390/genes11091102
N/A
0.345DataRank · unranked
9 citations

Emil Alexov, Satishkumar Ranganathan Ganakammal

Calculation of electrostatic free energy for the nonlinear Poisson-Boltzmann model based on the dimensionless potential

Journal of Computational Physics(2023)10.1016/j.jcp.2023.112634
N/A
0.330DataRank · unranked
8 citations

Idowu Ijaodoro, Mark R. McGowan, Emil Alexov, Shan Zhao

Further Development of SAMPDI-3D: A Machine Learning Method for Predicting Binding Free Energy Changes Caused by Mutations in Either Protein or DNA

Genes(2025)10.3390/genes16010101
N/A
0.330DataRank · unranked
8 citations

Shamrat Kumar Paul, Shailesh Kumar Panday, Emil Alexov, Prawin Rimal

On delivering polar solvation free energy of proteins from energy minimized structures using a regularized super‐Gaussian Poisson–Boltzmann model

Journal of Computational Chemistry(2024)10.1002/jcc.27496
N/A
0.241DataRank · unranked
4 citations

Arghya Chakravorty, Shan Zhao, Emil Alexov, Shailesh Kumar Panday

PKAD-R: Curated, Redesigned and Expanded Database of Experimental pKa Values in Proteins

Journal of Computational Biophysics and Chemistry(2025)10.1142/s2737416525500164
Top 62%
0.231DataRank
Top 62%3 citations

Shailesh Kumar Panday, Kaoru Ri, Emil Alexov, Bernard R. Brooks, A. Damjanović +1 more

On generalizing the induced surface charge method to heterogeneous Poisson-Boltzmann models for electrostatic free energy calculation

Journal of Computational Physics(2025)10.1016/j.jcp.2025.114452
N/A
0.104DataRank · unranked
1 citations

Yuanzhen Shao, Emil Alexov, Shan Zhao, Idowu Ijaodoro

Predicting the Effect of Single Mutations on Protein Stability and Binding with Respect to Types of Mutations

International Journal of Molecular Sciences(2023)10.3390/ijms241512073
N/A
0DataRank · unranked
18 citations

Shailesh Kumar Panday, Prawin Rimal, Nicolas Ancona, Emil Alexov, Preeti Pandey

BION-2: Predicting Positions of Non-Specifically Bound ions on Protein Surface by a Gaussian-based Treatment of Electrostatic Environment

Research Square(2020)10.21203/rs.3.rs-39525/v1
N/A
0DataRank · unranked
2 citations

Arghya Chakravorty, Shailesh Pandey, Emil Alexov, Mihiri H. B. Shashikala

BION-2: Predicting Positions of Non-Specifically Bound Ions on Protein Surface by a Gaussian-Based Treatment of Electrostatics

International Journal of Molecular Sciences(2020)10.3390/ijms22010272
N/A
0DataRank · unranked
10 citations

Arghya Chakravorty, Shailesh Kumar Panday, Emil Alexov, H. B. Mihiri Shashikala

Most monogenic disorders are caused by mutations altering protein folding free energy

Research Square(2023)10.21203/rs.3.rs-3442589/v1
N/A
0DataRank · unranked
1 citations

Emil Alexov, Preeti Pandey

Most Monogenic Disorders Are Caused by Mutations Altering Protein Folding Free Energy

International Journal of Molecular Sciences(2024)10.3390/ijms25041963
N/A
0DataRank · unranked
11 citations

Emil Alexov, Preeti Pandey

SAAMBE-MEM: a sequence-based method for predicting binding free energy change upon mutation in membrane protein–protein complexes

Bioinformatics(2024)10.1093/bioinformatics/btae544
N/A
0DataRank · unranked
7 citations

Shailesh Kumar Panday, Xu Wang, Yunhui Peng, Emil Alexov, Prawin Rimal

Genetic Variants Linked to Opioid Addiction: A Genome-Wide Association Study

International Journal of Molecular Sciences(2024)10.3390/ijms252312516
N/A
0DataRank · unranked
4 citations

Vijay Shankar, Rachel A. Lyman, Emil Alexov, Shailesh Kumar Panday

Quantification and structure–function analysis of calpain-1 and calpain-2 protease subunit interactions

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110243
N/A
0DataRank · unranked
7 citations

Prawin Rimal, Pitambar Poudel, Victoria Lewtas, Mathias Bell, Shailesh Kumar Panday +9 more

CDKL5 Deficiency Disorder: Revealing the Molecular Mechanism of Pathogenic Variants

International Journal of Molecular Sciences(2025)10.3390/ijms26178399
Top 100%
0DataRank
Top 100%0 citations

Shailesh Kumar Panday, Luigi Boccuto, Emil Alexov, Shamrat Kumar Paul

Strategies for in Silico Drug Discovery to Modulate Macromolecular Interactions Altered by Mutations

Frontiers in Bioscience-Landmark(2025)10.31083/fbl26339
N/A
0DataRank · unranked
3 citations

Maria A. Miteva, Emil Alexov, Pitambar Poudel

SAMPDI-3D: predicting the effects of protein and DNA mutations on protein–DNA interactions

Bioinformatics(2021)10.1093/bioinformatics/btab567
N/A
0DataRank · unranked
26 citations

Shailesh Kumar Panday, Yunhui Peng, Emil Alexov, Gen Li

Computational Investigation of the pH Dependence of Stability of Melanosome Proteins: Implication for Melanosome formation and Disease

International Journal of Molecular Sciences(2021)10.3390/ijms22158273
N/A
0DataRank · unranked
9 citations

H. B. Mihiri Shashikala, Jacob Jeffries, Bohua Wu, Stacie K. Loftus, Jonathan H. Zippin +2 more

Convergence of a diffuse interface Poisson-Boltzmann (PB) model to the sharp interface PB model: A unified regularization formulation

Applied Mathematics and Computation(2022)10.1016/j.amc.2022.127501
N/A
0DataRank · unranked
4 citations

Mark R. McGowan, Siwen Wang, Emil Alexov, Shan Zhao, Yuanzhen Shao

SAAFEC-SEQ: A Sequence-Based Method for Predicting the Effect of Single Point Mutations on Protein Thermodynamic Stability

International Journal of Molecular Sciences(2021)10.3390/ijms22020606
N/A
0DataRank · unranked
123 citations

Shailesh Kumar Panday, Emil Alexov, Gen Li