Bhavya Papudeshi

Also affiliated with University of Lausanne

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 13 papers. Top paper: “Ten simple rules and a template for creating workflows-as-applications”.

Ten simple rules and a template for creating workflows-as-applications

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010705

N/A

0DataRank · unranked

29 citations

N. Tessa Pierce‐Ward, Radosław Suchecki, Vijini Mallawaarachchi, Bhavya Papudeshi, Scott A. Handley +4 more

The human gut virome: composition, colonization, interactions, and impacts on human health

Frontiers in Microbiology(2023)10.3389/fmicb.2023.963173

N/A

0DataRank · unranked

75 citations

Michael J. Roach, Amber Skye, Bhavya Papudeshi, Laura K. Inglis, Vijini Mallawaarachchi +5 more

Phables: from fragmented assemblies to high-quality bacteriophage genomes

Bioinformatics(2023)10.1093/bioinformatics/btad586

N/A

0DataRank · unranked

49 citations

Michael J. Roach, Przemysław Decewicz, Bhavya Papudeshi, Sarah K. Giles, Susanna R. Grigson +7 more

Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2

Microbial Genomics(2023)10.1099/mgen.0.001100

N/A

0DataRank · unranked

16 citations

Alejandro A. Vega, Cole Souza, Sarah K. Giles, Vijini Mallawaarachchi, Michael J. Roach +20 more

The Promise and Pitfalls of Prophages

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.20.537752

N/A

0DataRank · unranked

24 citations

Bhavya Papudeshi, Laura K. Inglis, Michael J. Roach, Przemysław Decewicz, Katelyn McNair +4 more

Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.12.571215

N/A

0DataRank · unranked

22 citations

Ghais Houtak, Ryan R. Wick, Vijini Mallawaarachchi, Michael J. Roach, Bhavya Papudeshi +5 more

Phables: from fragmented assemblies to high-quality bacteriophage genomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.04.535632

N/A

0DataRank · unranked

4 citations

Michael J. Roach, Przemysław Decewicz, Bhavya Papudeshi, Sarah K. Giles, Susanna R. Grigson +7 more

Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.05.531146

N/A

0DataRank · unranked

1 citations

Alejandro A. Vega, Cole Souza, Sarah K. Giles, Vijini Mallawaarachchi, Michael J. Roach +20 more

Hybracter: enabling scalable, automated, complete and accurate bacterial genome assemblies

Microbial Genomics(2024)10.1099/mgen.0.001244

N/A

0DataRank · unranked

95 citations

Ghais Houtak, Ryan R. Wick, Vijini Mallawaarachchi, Michael J. Roach, Bhavya Papudeshi +5 more

Solving genomic puzzles: computational methods for metagenomic binning

Briefings in Bioinformatics(2024)10.1093/bib/bbae372

N/A

0DataRank · unranked

19 citations

Anuradha Wickramarachchi, Hansheng Xue, Bhavya Papudeshi, Susanna R. Grigson, George Bouras +7 more

Sphae: an automated toolkit for predicting phage therapy candidates from sequencing data

Bioinformatics Advances(2024)10.1093/bioadv/vbaf004

N/A

0DataRank · unranked

15 citations

Michael J. Roach, Vijini Mallawaarachchi, George Bouras, Susanna R. Grigson, Sarah K. Giles +13 more

Koverage: Read-coverage analysis for massive(meta)genomics datasets

The Journal of Open Source Software(2024)10.21105/joss.06235

N/A

0DataRank · unranked

8 citations

Bradley J. Hart, Sarah J. Beecroft, Bhavya Papudeshi, Laura K. Inglis, Susanna R. Grigson +4 more

Phage therapy candidates from Sphae: An automated toolkit for predicting sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.18.624194

N/A

0DataRank · unranked

2 citations

Michael J. Roach, Vijini Mallawaarachchi, George Bouras, Susanna R. Grigson, Sarah K. Giles +13 more