Joshua C. Cofsky

Also affiliated with Innovative Genomics Institute, University of California, Berkeley

Biochemistry, Genetics and Molecular BiologyBusiness, Management and Accounting

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 14 papers. Top paper: “CRISPR-Cas12a bends DNA to destabilize base pairs during target interrogation”.

CRISPR-Cas12a bends DNA to destabilize base pairs during target interrogation

Nucleic Acids Research(2024)10.1093/nar/gkae1192

N/A

0.484DataRank · unranked

11 citations

Joshua C. Cofsky, Owen T. Tuck, Honglue Shi, Jennifer A. Doudna, Katarzyna M. Soczek

CRISPR-Cas12a bends DNA to destabilize base pairs during target interrogation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.31.606079

N/A

0.104DataRank · unranked

1 citations

Joshua C. Cofsky, Owen T. Tuck, Honglue Shi, Jennifer A. Doudna, Katarzyna M. Soczek

CRISPR–Cas9 bends and twists DNA to read its sequence

Nature Structural & Molecular Biology(2022)10.1038/s41594-022-00756-0

N/A

0DataRank · unranked

84 citations

Katarzyna M. Soczek, Gavin J. Knott, Eva Nogales, Jennifer A. Doudna, Joshua C. Cofsky

Crystal structure of an RNA/DNA strand exchange junction

PLoS ONE(2022)10.1371/journal.pone.0263547

N/A

0DataRank · unranked

7 citations

Gavin J. Knott, Christine L. Gee, Jennifer A. Doudna, Joshua C. Cofsky

Bacterial spore germination receptors are nutrient-gated ion channels

Science(2023)10.1126/science.adg9829

N/A

0DataRank · unranked

93 citations

Jeremy D. Amon, Lior Artzi, Fernando H. Ramírez‐Guadiana, Kelly P. Brock, Joshua C. Cofsky +4 more

CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes

Nucleic Acids Research(2023)10.1093/nar/gkad890

N/A

0DataRank · unranked

38 citations

Marena Trinidad, Daniel Bellieny‐Rabelo, Elaine Zhang, Hannah Karp, Petr Skopintsev +48 more

CasPEDIA Database: A Functional Classification System for Class 2 CRISPR-Cas Enzymes

(2023)10.32942/x2c31f

N/A

0DataRank · unranked

6 citations

Marena Trinidad, Daniel Bellieny‐Rabelo, Elaine Zhang, Hannah Karp, Petr Skopintsev +47 more

Higher-order combinatorial chromatin perturbations by engineered CRISPR-Cas12a for functional genomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.18.558350

N/A

0DataRank · unranked

4 citations

Caroline Wilson, Nicholas A. Sambold, Rui Dai, QiLiang Chen, Sara Misiukiewicz +7 more

Engineered CRISPR-Cas12a for higher-order combinatorial chromatin perturbations

Nature Biotechnology(2024)10.1038/s41587-024-02224-0

N/A

0DataRank · unranked

48 citations

Caroline Wilson, Nicholas A. Sambold, Rui Dai, QiLiang Chen, Noam Teyssier +7 more

SpoVAF and FigP assemble into oligomeric ion channels that enhance spore germination

Genes & Development(2024)10.1101/gad.351353.123

N/A

0DataRank · unranked

16 citations

Jeremy D. Amon, Anna P. Brogan, Lior Artzi, Fernando H. Ramírez‐Guadiana, Joshua C. Cofsky +3 more

Rapid two-step target capture ensures efficient CRISPR-Cas9-guided genome editing

Molecular Cell(2025)10.1016/j.molcel.2025.03.024

N/A

0DataRank · unranked

21 citations

Noor Al-Sayyad, Kevin Wasko, Marena Trinidad, Erin Doherty, Kamakshi Vohra +7 more

Cas9 interrogates DNA in discrete steps modulated by mismatches and supercoiling

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1913445117

N/A

0DataRank · unranked

127 citations

Addison V. Wright, Joshua C. Cofsky, Kevin Aris, Jennifer A. Doudna, Zev Bryant +1 more

Dynamic basis of supercoiling-dependent DNA interrogation by Cas12a via R-loop intermediates

Nature Communications(2025)10.1038/s41467-025-57703-y

N/A

0DataRank · unranked

10 citations

Joshua C. Cofsky, Honglue Shi, Noor Al-Sayyad, Ivan E. Ivanov, Ashwin Balaji +3 more

CRISPR-Cas9 bends and twists DNA to read its sequence

Research Square(2021)10.21203/rs.3.rs-882403/v1

N/A

0DataRank · unranked

2 citations

Joshua C. Cofsky, Katarzyna M. Soczek, Gavin J. Knott, Eva Nogales, Jennifer A. Doudna