Alex Kang

Environmental ScienceMaterials ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 63 papers. Top paper: “Rapamycin rejuvenates oral health in aging mice”.

Rapamycin rejuvenates oral health in aging mice

eLife(2020)10.7554/elife.54318

N/A

3.3DataRank · unranked

92 citations

Kristopher A. Kerns, Andrew Ouellette, Laura Robinson, H Douglas Morris, Catherine Kaczorowski +7 more

Robust deep learning based protein sequence design using ProteinMPNN

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.03.494563

N/A

0.717DataRank · unranked

118 citations

Ivan Anishchenko, Nathaniel R. Bennett, Hua Bai, Robert J. Ragotte, Lukas F. Milles +17 more

Design of multi-scale protein complexes by hierarchical building block fusion

Nature Communications(2021)10.1038/s41467-021-22276-z

N/A

0.678DataRank · unranked

91 citations

Rubul Mout, William Sheffler, Natasha I. Edman, Ivan Vulovic, Young‐Jun Park +15 more

Preclinical proof of principle for orally delivered Th17 antagonist miniproteins

Cell(2024)10.1016/j.cell.2024.05.052

N/A

0.673DataRank · unranked

88 citations

Franziska Seeger, Ta-Yi Yu, Merve Aydin, Yang Hui-lin, Daniel Rosenblum +21 more

Blueprinting extendable nanomaterials with standardized protein blocks

Nature(2024)10.1038/s41586-024-07188-4

N/A

0.624DataRank · unranked

63 citations

Yang Hsia, Ryan D. Kibler, Jinwei Xu, Neville P. Bethel, Deepesh Nagarajan +27 more

Target-conditioned diffusion generates potent TNFR superfamily antagonists and agonists

Science(2024)10.1126/science.adp1779

N/A

0.609DataRank · unranked

57 citations

Aditya Krishnakumar, Robert J. Ragotte, Inna Goreshnik, Brian Coventry, Asim K. Bera +10 more

Designed miniproteins potently inhibit and protect against MERS-CoV

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.03.621760

N/A

0.165DataRank · unranked

2 citations

M. Alejandra Tortorici, Nicholas Catanzaro, Amin Addetia, Brian Coventry, Heather M. Froggatt +17 more

Clinical experience following implementation of routine SPECT-CT imaging following 131-iodine administration for thyroid cancer

Endocrine Connections(2022)10.1530/ec-21-0371

N/A

0DataRank · unranked

1 citations

Alexandra Coleman, Nathalie Silva de Morais, Iñigo Landa, Theodora Pappa, Alex Kang +4 more

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.04.502842

N/A

0DataRank · unranked

10 citations

Alena Khmelinskaia, William Sheffler, Marcos C. Miranda, Aleksandar Antanasijevic, Andrew J. Borst +21 more

Accurate Computational Design of 3D Protein Crystals

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.18.517014

N/A

0DataRank · unranked

8 citations

Shunzhi Wang, Una Nattermann, Asim K. Bera, Andrew J. Borst, Matthew J. Bick +21 more

Hallucinating protein assemblies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.09.493773

N/A

0DataRank · unranked

4 citations

Lukas F. Milles, Alexis Courbet, Robert J. Ragotte, Justas Dauparas, Elias S. Kinfu +11 more

Hallucination of closed repeat proteins containing central pockets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.01.506251

N/A

0DataRank · unranked

3 citations

Derrick R. Hicks, Dmitri Zorine, Justas Dauparas, Basile I. M. Wicky, Lukas F. Milles +7 more

De novo designed ice-binding proteins from twist-constrained helices

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.09.519714

N/A

0DataRank · unranked

0 citations

Roderick P. Tas, Daniëlle van den Broek, Hannah Nguyen, Alex Kang, Asim K. Bera +4 more

De novo design of high-affinity binders of bioactive helical peptides

Nature(2023)10.1038/s41586-023-06953-1

N/A

0DataRank · unranked

230 citations

Philip J. Y. Leung, Preetham Venkatesh, Isaac D. Lutz, Fabian Hink, Huu‐Hien Huynh +25 more

Design of stimulus-responsive two-state hinge proteins

Science(2023)10.1126/science.adg7731

N/A

0DataRank · unranked

91 citations

Philip J. Y. Leung, Maxx H. Tessmer, Adam Broerman, Cullen Demakis, Acacia F. Dishman +18 more

Accurate computational design of three-dimensional protein crystals

Nature Materials(2023)10.1038/s41563-023-01683-1

N/A

0DataRank · unranked

56 citations

Shunzhi Wang, Una Nattermann, Asim K. Bera, Andrew J. Borst, Muammer Y. Yaman +26 more

De novo design of small beta barrel proteins

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2207974120

N/A

0DataRank · unranked

36 citations

Davin R. Jensen, David Feldman, Doug Tischer, Ayesha Saleem, Cameron M. Chow +11 more

Precisely patterned nanofibres made from extendable protein multiplexes

Nature Chemistry(2023)10.1038/s41557-023-01314-x

N/A

0DataRank · unranked

29 citations

Andrew J. Borst, Fabio Parmeggiani, Matthew J. Bick, TJ Brunette, Hannah Nguyen +10 more

Computational design of constitutively active cGAS

Nature Structural & Molecular Biology(2023)10.1038/s41594-022-00862-z

N/A

0DataRank · unranked

19 citations

Hannah E. Volkman, Elizabeth Gray, Sergey Ovchinnikov, Stephanie Cambier, Asim K. Bera +7 more

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2214556120

N/A

0DataRank · unranked

18 citations

Alena Khmelinskaia, William Sheffler, Marcos C. Miranda, Aleksandar Antanasijevic, Andrew J. Borst +21 more

De novo designed ice-binding proteins from twist-constrained helices

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2220380120

N/A

0DataRank · unranked

11 citations

Roderick P. Tas, Daniëlle van den Broek, Chuanbao Zheng, Hannah Nguyen, Alex Kang +5 more

Hallucination of closed repeat proteins containing central pockets

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01112-6

N/A

0DataRank · unranked

13 citations

Derrick R. Hicks, Dmitri Zorine, Justas Dauparas, Basile I. M. Wicky, Lukas F. Milles +7 more

De novo design of monomeric helical bundles for pH‐controlled membrane lysis

Protein Science(2023)10.1002/pro.4769

N/A

0DataRank · unranked

10 citations

Issa Benna, Basile I. M. Wicky, Jacob T. Croft, Lauren Carter, Asim K. Bera +7 more

Design of Diverse Asymmetric Pockets in De Novo Homo-oligomeric Proteins

Biochemistry(2023)10.1021/acs.biochem.2c00497

N/A

0DataRank · unranked

5 citations

Andrew J. Borst, Derrick R. Hicks, Isabelle Moczygemba, David Feldman, Brian Coventry +7 more

Cyclic peptide structure prediction and design using AlphaFold

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.25.529956

N/A

0DataRank · unranked

81 citations

Katelyn V. Campbell, Asim K. Bera, Alex Kang, Simon Kozlov, Joshmyn De La Cruz +6 more

Small-molecule binding and sensing with a designed protein family

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.01.565201

N/A

0DataRank · unranked

34 citations

Samuel J. Pellock, Christoffer Norn, Doug Tischer, Justas Dauparas, Ivan Anischenko +14 more

De novo design of diverse small molecule binders and sensors using Shape Complementary Pseudocycles

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.20.572602

N/A

0DataRank · unranked

14 citations

Meerit Y. Said, Long Tran, Sagardip Majumder, Inna Goreshnik, Gyu Rie Lee +20 more

Rapid and automated design of two-component protein nanomaterials using ProteinMPNN

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.04.551935

N/A

0DataRank · unranked

10 citations

Natalie Brunette, Alexander M.C. Goodson, Justas Dauparas, Sue Yi, Erin C. Yang +9 more

Design of amyloidogenic peptide traps

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.13.523785

N/A

0DataRank · unranked

7 citations

Ewa Andrzejewska, Hannah L. Han, Enrico Rennella, Matthias M. Schneider, Georg Meisl +12 more

Design of stimulus-responsive two-state hinge proteins

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.27.525968

N/A

0DataRank · unranked

7 citations

Philip J. Y. Leung, Maxx H. Tessmer, Adam Broerman, Cullen Demakis, Acacia F. Dishman +18 more

Blueprinting expandable nanomaterials with standardized protein building blocks

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.09.544258

N/A

0DataRank · unranked

6 citations

Yang Hsia, Ryan D. Kibler, Jinwei Xu, Neville P. Bethel, Deepesh Nagarajan +26 more

De novo design of energy transfer proteins housing excitonically coupled chlorophyll special pairs

Research Square(2023)10.21203/rs.3.rs-2736786/v1

N/A

0DataRank · unranked

0 citations

Shunzhi Wang, Madison Kennedy, Mariano Curti, George A. Sutherland, Cvetelin Vasilev +25 more

Improving Protein Expression, Stability, and Function with ProteinMPNN

Journal of the American Chemical Society(2024)10.1021/jacs.3c10941

N/A

0DataRank · unranked

314 citations

Reyes Núñez‐Franco, Indrek Kalvet, Samuel J. Pellock, Basile I. M. Wicky, Lukas F. Milles +11 more

Binding and sensing diverse small molecules using shape-complementary pseudocycles

Science(2024)10.1126/science.adn3780

N/A

0DataRank · unranked

85 citations

Meerit Y. Said, Long Tran, Sagardip Majumder, Inna Goreshnik, Gyu Rie Lee +20 more

Sculpting conducting nanopore size and shape through de novo protein design

Science(2024)10.1126/science.adn3796

N/A

0DataRank · unranked

55 citations

Sagardip Majumder, Thomas Müntener, James Whitehouse, Carolin Berner, Asim K. Bera +11 more

Rapid and automated design of two-component protein nanomaterials using ProteinMPNN

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2314646121

N/A

0DataRank · unranked

43 citations

Natalie Brunette, Alex Goodson, Justas Dauparas, Sue Y. Yi, Erin C. Yang +9 more

De novo design of proteins housing excitonically coupled chlorophyll special pairs

Nature Chemical Biology(2024)10.1038/s41589-024-01626-0

N/A

0DataRank · unranked

29 citations

Shunzhi Wang, Madison Kennedy, Mariano Curti, George A. Sutherland, Cvetelin Vasilev +26 more

Enumerative Discovery of Noncanonical Polypeptide Secondary Structures

Journal of the American Chemical Society(2024)10.1021/jacs.4c04991

N/A

0DataRank · unranked

4 citations

Theresa A. Ramelot, Mariano Curti, Margaret A. Eastman, Alex Kang, Asim K. Bera +7 more

Diffusing protein binders to intrinsically disordered proteins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.16.603789

N/A

0DataRank · unranked

24 citations

Kejia Wu, Hojun Choi, Hannah L. Han, Xulie Zhang, Joseph L. Watson +18 more

Parametrically guided design of beta barrels and transmembrane nanopores using deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.22.604663

N/A

0DataRank · unranked

8 citations

Joseph L. Watson, David Juergens, Sagardip Majumder, Ria Sonigra, Stacey Gerben +5 more

De novo designed proteins neutralize lethal snake venom toxins

Research Square(2024)10.21203/rs.3.rs-4402792/v1

N/A

0DataRank · unranked

6 citations

Susana Vázquez Torres, Melisa Benard Valle, Stephen P. Mackessy, Stefanie K. Menzies, Nicholas R. Casewell +28 more

De novo designed proteins neutralize lethal snake venom toxins

Nature(2025)10.1038/s41586-024-08393-x

N/A

0DataRank · unranked

140 citations

Melisa Bénard-Valle, Stephen P. Mackessy, Stefanie K. Menzies, Nicholas R. Casewell, Shirin Ahmadi +28 more

Design of intrinsically disordered region binding proteins

Science(2025)10.1126/science.adr8063

N/A

0DataRank · unranked

82 citations

Hanlun Jiang, Derrick R. Hicks, Caixuan Liu, Edin Muratspahić, Theresa A. Ramelot +24 more

Cyclic peptide structure prediction and design using AlphaFold2

Nature Communications(2025)10.1038/s41467-025-59940-7

N/A

0DataRank · unranked

65 citations

Katelyn V. Campbell, Asim K. Bera, Alex Kang, Simon Kozlov, Yensi Flores Bueso +12 more

Accurate de novo design of high-affinity protein-binding macrocycles using deep learning

Nature Chemical Biology(2025)10.1038/s41589-025-01929-w

N/A

0DataRank · unranked

56 citations

David Juergens, Victor Adebomi, Yensi Flores Bueso, Qinqin Zhao, Alexandria N. Leveille +21 more

Designed miniproteins potently inhibit and protect against MERS-CoV

Cell Reports(2025)10.1016/j.celrep.2025.115760

N/A

0DataRank · unranked

12 citations

M. Alejandra Tortorici, Nicholas J. Catanzaro, Amin Addetia, Brian Coventry, Heather M. Froggatt +18 more

Design of facilitated dissociation enables timing of cytokine signalling

Nature(2025)10.1038/s41586-025-09549-z

N/A

0DataRank · unranked

12 citations

Christoph Pollmann, Yang Zhao, Mauriz A. Lichtenstein, Mark D. Jackson, Maxx H. Tessmer +17 more

Parametrically guided design of beta barrels and transmembrane nanopores using deep learning

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2425459122

N/A

0DataRank · unranked

11 citations

Joseph L. Watson, David Juergens, Sagardip Majumder, Ria Sonigra, Stacey Gerben +5 more

De Novo Design of High‐Affinity Miniprotein Binders Targeting Francisella Tularensis Virulence Factor

Angewandte Chemie International Edition(2025)10.1002/anie.202516058

N/A

0DataRank · unranked

2 citations

Buwei Huang, Andi Liu, Lieselotte S.M. Kreuk, Yaxi Wang, Victor Adebomi +14 more

Computational design of potent and selective binders of BAK and BAX

Science Advances(2025)10.1126/sciadv.adt4170

N/A

0DataRank · unranked

1 citations

Erinna F. Lee, Tiffany J. Harris, Sharon Tran, Asim K. Bera, L. M. Miller +14 more

Designed NGF mimetics with reduced nociceptive signatures in neurons

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.14.648806

N/A

0DataRank · unranked

6 citations

Aerin Yang, Damien Detraux, David E. Johnson, Chloe J. Peach, Natasha I. Edman +30 more

Design of Orthogonal Far-Red, Orange and Green Fluorophore-binding Proteins for Multiplex Imaging

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.03.668343

N/A

0DataRank · unranked

6 citations

Steffen Klein, Shajesh Sharma, David Juergens, Justin Decarreau, Bingxu Liu +14 more

De novo design of phosphotyrosine peptide binders

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.29.678898

N/A

0DataRank · unranked

3 citations

Jason Z. Zhang, Kejia Wu, Gyu Rie Lee, Brian Coventry, Isabella M Silvestri +28 more

De Novo Design of Miniprotein Inhibitors of Bacterial Adhesins

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.18.670751

N/A

0DataRank · unranked

1 citations

Tuscan R. Thompson, Edward D. B. Lopatto, Pearl Magala, Patrick Erickson, Andrew C. Hunt +24 more

Computational design of cysteine proteases

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.21.689808

N/A

0DataRank · unranked

1 citations

Brian Coventry, Magnus S. Bauer, Preetham Venkatesh, An‐Qi Chen, Donghyo Kim +13 more

Engineering Smart Targeting Nanovesicles and Their Combination with Hydrogels for Controlled Drug Delivery

Pharmaceutics(2020)10.3390/pharmaceutics12090849

N/A

0DataRank · unranked

126 citations

Polen Koçak, Alex Kang, Elmira Arab‐Tehrany, Jennifer E. Ward, Su Ryon Shin +1 more

Device for Electrochemical Caffeine Analysis in Fluids (DECAF): A Stir‐Bar‐Embedded Sensor for Real‐Time Caffeine Analysis in Commercial and Homemade Beverages

Small(2025)10.1002/smll.202506439

N/A

0DataRank · unranked

0 citations

Haozheng Ma, Sina Khazaee Nejad, Callie Luong, Caitlyn Nguyen, S. Bartholomew +5 more

Hierarchical design of multi-scale protein complexes by combinatorial assembly of oligomeric helical bundle and repeat protein building blocks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.27.221333

N/A

0DataRank · unranked

8 citations

Rubul Mout, William Sheffler, Natasha I. Edman, Ivan Vulovic, Young‐Jun Park +15 more

De novo design of transmembrane β-barrels

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.22.346965

N/A

0DataRank · unranked

0 citations

Paul White, Binyong Liang, Jim E. Horne, Asim K. Bera, Cameron M. Chow +14 more

De novo protein design by deep network hallucination

Nature(2021)10.1038/s41586-021-04184-w

N/A

0DataRank · unranked

616 citations

Samuel J. Pellock, Tamuka M. Chidyausiku, Theresa A. Ramelot, Sergey Ovchinnikov, Jingzhou Hao +10 more

De novo design of transmembrane β barrels

Science(2021)10.1126/science.abc8182

N/A

0DataRank · unranked

156 citations

Paul White, Binyong Liang, Jim E. Horne, Asim K. Bera, Cameron M. Chow +14 more

Robust deep learning–based protein sequence design using ProteinMPNN

Science(2022)10.1126/science.add2187

N/A

0DataRank · unranked

1912 citations

Ivan Anishchenko, Nathaniel R. Bennett, Hua Bai, Robert J. Ragotte, Lukas F. Milles +17 more

De novo design of protein homodimers containing tunable symmetric protein pockets

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2113400119

N/A

0DataRank · unranked

20 citations

Madison Kennedy, Kirsten A. Thompson, Michelle DeWitt, Brian Coventry, Alex Kang +6 more