Matthew R. Olm

Also affiliated with Stanford University

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceAgricultural and Biological SciencesNursing

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.6Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Clades of huge phages from across Earth’s ecosystems

Nature(2020)10.1038/s41586-020-2007-4

Top 4%

5.6DataRank

Top 4%551 citations

Rohan Sachdeva, Lin-Xing Chen, Fred R. Ward, Patrick Munk, Audra E. Devoto +40 more

Papers

Driven by 25 papers — median percentile 96. Top paper: “Clades of huge phages from across Earth’s ecosystems”.

Clades of huge phages from across Earth’s ecosystems

Nature(2020)10.1038/s41586-020-2007-4

Top 4%

5.6DataRank

Top 4%551 citations

Rohan Sachdeva, Lin-Xing Chen, Fred R. Ward, Patrick Munk, Audra E. Devoto +40 more

Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes

Cell(2023)10.1016/j.cell.2023.05.046

N/A

4.7DataRank · unranked

224 citations

Matthew R. Olm, Bryan D. Merrill, Dylan Dahan, Surya Tripathi, Sean P. Spencer +7 more

Reporting guidelines for human microbiome research: the STORMS checklist

Nature Medicine(2021)10.1038/s41591-021-01552-x

N/A

0.918DataRank · unranked

454 citations

Audrey Renson, Genomic Standards Consortium, Cesare Furlanello, Shaimaa Elsafoury, Ludwig Geistlinger +98 more

Using strain-resolved analysis to identify contamination in metagenomics data

Microbiome(2023)10.1186/s40168-023-01477-2

N/A

0.542DataRank · unranked

36 citations

Jordan Hoff, Matthew R. Olm, Jacob West-Roberts, Spencer Diamond, Brian Firek +3 more

Infant gut strain persistence is associated with maternal origin, phylogeny, and functional potential including surface adhesion and iron acquisition

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.26.428340

N/A

0.396DataRank · unranked

13 citations

Matthew R. Olm, Spencer Diamond, Alexander Crits‐Christoph, Brian Firek, Robyn Baker +3 more

Hadza Prevotella Require Diet-derived Microbiota Accessible Carbohydrates to Persist in Mice

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.08.531063

N/A

0.345DataRank · unranked

9 citations

Matthew R. Olm, Nicolas Terrapon, Fatima Enam, Steven K. Higginbottom, Justin L. Sonnenburg +2 more

DNA extraction and virome processing methods strongly influence recovered human gut viral community characteristics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.25.690293

N/A

0.208DataRank · unranked

3 citations

Trina A. Knotts, Sean H. Adams, Mohamed R. Ali, Matthew R. Olm, Joanne Emerson +1 more

Metagenomic Immunoglobulin Sequencing (MIG-Seq) Exposes Patterns of IgA Antibody Binding in the Healthy Human Gut Microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.21.568153

N/A

0.165DataRank · unranked

2 citations

Sean P. Spencer, Evelyn Lemus Silva, Justin L. Sonnenburg, Matthew R. Olm

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

Microbiome(2021)10.1186/s40168-021-01085-y

N/A

0DataRank · unranked

25 citations

Samantha L. Peters, Matthew R. Olm, Feiqiao B. Yu, Haley Gause, Yue Clare Lou +7 more

Robust Variation in Infant Gut Microbiome Assembly Across a Spectrum of Lifestyles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.30.486467

N/A

0DataRank · unranked

11 citations

Dylan Dahan, Matthew M. Carter, Bryan D. Merrill, Brian Yu, Sunit Jain +9 more

Using strain-resolved analysis to identify contamination in metagenomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.16.476537

N/A

0DataRank · unranked

8 citations

Jordan Hoff, Matthew R. Olm, Jacob West-Roberts, Spencer Diamond, Brian Firek +3 more

Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries

mSystems(2020)10.1128/msystems.00731-19

N/A

0DataRank · unranked

246 citations

Alexander Crits‐Christoph, Spencer Diamond, Adi Lavy, Paula B. Matheus Carnevali, Jillian F. Banfield +1 more

Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut

PLoS ONE(2020)10.1371/journal.pone.0229537

N/A

0DataRank · unranked

27 citations

Matthew R. Olm, Tali Raveh-Sadka, Christopher T. Brown, Ruth Sher, Brian Firek +4 more

Hadza Prevotella require diet-derived microbiota-accessible carbohydrates to persist in mice

Cell Reports(2023)10.1016/j.celrep.2023.113233

N/A

0DataRank · unranked

29 citations

Matthew R. Olm, Nicolas Terrapon, Fatima Enam, Steven K. Higginbottom, Justin L. Sonnenburg +2 more

Effects of Maternal Fortified Balanced Energy-Protein Supplementation on the Mother-Infant Gut Microbiome: A Sub-Study of the MISAME-III Randomized Controlled Trial

medRxiv(2023)10.1101/2023.11.24.23298964

N/A

0DataRank · unranked

1 citations

Steff Taelman, Matthew R. Olm, Laéticia Céline Toe, Eva Balini, Lionel Olivier Ouédraogo +13 more

Milk to mucus: How B. fragilis colonizes the gut

Cell Host & Microbe(2024)10.1016/j.chom.2024.01.007

N/A

0DataRank · unranked

4 citations

Noel T. Mueller, Matthew R. Olm

MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.29.587370

N/A

0DataRank · unranked

6 citations

Matthew R. Olm, Caroline Isabel Kothe, Joshua D. Evans, Justin L. Sonnenburg, Elisa B. Caffrey

Metagenomic immunoglobulin sequencing reveals IgA coating of microbial strains in the healthy human gut

Nature Microbiology(2025)10.1038/s41564-024-01887-4

N/A

0DataRank · unranked

16 citations

Sean P. Spencer, Tadashi Takeuchi, Evelyn Lemus Silva, Justin L. Sonnenburg, Matthew R. Olm

Maternal balanced energy-protein supplementation reshapes the maternal gut microbiome and enhances carbohydrate metabolism in infants: a randomized controlled trial

Nature Communications(2025)10.1038/s41467-025-57838-y

N/A

0DataRank · unranked

7 citations

Steff Taelman, Matthew R. Olm, Laéticia Céline Toe, Eva Balini, Lionel Olivier Ouédraogo +15 more

Prehistoric Global Migration of Vanishing Gut Microbes With Humans

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.15.670570

N/A

0DataRank · unranked

3 citations

Zhiru Liu, Matthew R. Olm, Mélanie Martin, Daniel D. Sprockett, Benjamin C. Trumble +9 more

Metabolic diversity in commensal protists regulates intestinal immunity and trans-kingdom competition

Cell(2023)10.1016/j.cell.2023.11.018

N/A

0DataRank · unranked

36 citations

Soumaya Zlitni, Patrick T. West, Matthew M. Carter, Claire M. Mechler, Matthew R. Olm +10 more

Transporter genes in biosynthetic gene clusters predict metabolite characteristics and siderophore activity

Genome Research(2020)10.1101/gr.268169.120

N/A

0DataRank · unranked

71 citations

Nicholas Bhattacharya, Matthew R. Olm, Yun S. Song, Jillian F. Banfield, Alexander Crits‐Christoph

InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.22.915579

N/A

0DataRank · unranked

24 citations

Alexander Crits‐Christoph, Keith Bouma‐Gregson, Brian Firek, Michael J. Morowitz, Jillian F. Banfield +1 more

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics and proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.23.004093

N/A

0DataRank · unranked

0 citations

Samantha L. Peters, Matthew R. Olm, Feiqiao B. Yu, Yue Clare Lou, Brian Firek +6 more

Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100393

N/A

0DataRank · unranked

98 citations

Matthew R. Olm, Spencer Diamond, Alexander Crits‐Christoph, Brian Firek, Robyn Baker +3 more

Matthew R. Olm

Indexed papers

Top data-sharing exemplar

Papers