🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Zhiye Guo

Shanghai Jiao Tong University

ORCID: 0000-0001-5598-4834
Biochemistry, Genetics and Molecular BiologyComputer ScienceMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
2.5Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26609
Top 11%
1.9DataRank
Top 11%81 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Papers

Driven by 26 papers — median percentile 76. Top paper: “Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment”.

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26609
Top 11%
1.9DataRank
Top 11%81 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment

Utrecht University Repository (Utrecht University)(2023)10.22541/au.168888815.53957253/v1
Top 36%
0.540DataRank
Top 36%17 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14

10.22541/au.161733097.71126646/v1
N/A
0.345DataRank · unranked
9 citations

Tianqi Wu, Zhiye Guo, Jie Hou, Jianlin Cheng, Jian Liu

Distance‐based reconstruction of protein quaternary structures from inter‐chain contacts

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26269
N/A
0DataRank · unranked
13 citations

Farhan Quadir, Raj S. Roy, Zhiye Guo, Jianlin Cheng, Elham Soltanikazemi

Protein model accuracy estimation empowered by deep learning and inter-residue distance prediction in CASP14

Scientific Reports(2021)10.1038/s41598-021-90303-6
N/A
0DataRank · unranked
12 citations

Jian Liu, Zhiye Guo, Tianqi Wu, Jie Hou, Jianlin Cheng +1 more

MULTICOM2 open-source protein structure prediction system powered by deep learning and distance prediction

Scientific Reports(2021)10.1038/s41598-021-92395-6
N/A
0DataRank · unranked
4 citations

Jian Liu, Zhiye Guo, Jie Hou, Jianlin Cheng, Tianqi Wu

Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.28.428706
N/A
0DataRank · unranked
3 citations

Tianqi Wu, Zhiye Guo, Jie Hou, Jianlin Cheng, Jian Liu

Protein Model Accuracy Estimation Empowered by Deep Learning and Inter-residue Distance Prediction in CASP14

Research Square(2021)10.21203/rs.3.rs-228012/v1
N/A
0DataRank · unranked
3 citations

Jian Liu, Zhiye Guo, Tianqi Wu, Jie Hou, Jianlin Cheng +1 more

Prediction of inter-chain distance maps of protein complexes with 2D attention-based deep neural networks

Nature Communications(2022)10.1038/s41467-022-34600-2
N/A
0DataRank · unranked
56 citations

Jian Liu, Jeffrey Skolnick, Jianlin Cheng, Zhiye Guo

Multi-head attention-based U-Nets for predicting protein domain boundaries using 1D sequence features and 2D distance maps

BMC Bioinformatics(2022)10.1186/s12859-022-04829-1
N/A
0DataRank · unranked
9 citations

Zhiye Guo, Farhan Quadir, Jian Liu, Jianlin Cheng, Sajid Mahmud

Prediction of inter-chain distance maps of protein complexes with 2D attention-based deep neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.19.496734
N/A
0DataRank · unranked
7 citations

Jian Liu, Jeffrey Skolnick, Jianlin Cheng, Zhiye Guo

Prediction of inter-chain distance maps of protein complexes with 2D attention-based deep neural networks

Research Square(2022)10.21203/rs.3.rs-1658872/v1
N/A
0DataRank · unranked
5 citations

Jian Liu, Jeffrey Skolnick, Jianlin Cheng, Zhiye Guo

Multi-Head Attention-based U-Nets for Predicting Protein Domain Boundaries Using 1D Sequence Features and 2D Distance Maps

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.08.487689
N/A
0DataRank · unranked
1 citations

Zhiye Guo, Farhan Quadir, Jian Liu, Jianlin Cheng, Sajid Mahmud

DNSS2: improved ab initio protein secondary structure prediction using advanced deep learning architectures

Authorea(2020)10.22541/au.158379414.46257409
N/A
0DataRank · unranked
5 citations

Jie Hou, Jianlin Cheng, Zhiye Guo

Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15

Communications Biology(2023)10.1038/s42003-023-05525-3
N/A
0DataRank · unranked
76 citations

Zhiye Guo, Tianqi Wu, Raj S. Roy, Farhan Quadir, Chen Chen +2 more

Improving AlphaFold2-based protein tertiary structure prediction with MULTICOM in CASP15

Communications Chemistry(2023)10.1038/s42004-023-00991-6
N/A
0DataRank · unranked
31 citations

Zhiye Guo, Tianqi Wu, Raj S. Roy, Chen Chen, Jianlin Cheng +1 more

Atomic protein structure refinement using all-atom graph representations and SE(3)-equivariant graph transformer

Bioinformatics(2023)10.1093/bioinformatics/btad298
N/A
0DataRank · unranked
24 citations

Zhiye Guo, Jianlin Cheng, Tianqi Wu

Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26542
N/A
0DataRank · unranked
23 citations

Jian Liu, Nabin Giri, Zhiye Guo, Jianlin Cheng, Raj S. Roy

Enhancing AlphaFold-Multimer-based Protein Complex Structure Prediction with MULTICOM in CASP15

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.16.541055
N/A
0DataRank · unranked
16 citations

Zhiye Guo, Tianqi Wu, Raj S. Roy, Farhan Quadir, Chen Chen +2 more

Diffusion Models in Bioinformatics: A New Wave of Deep Learning Revolution in Action

arXiv (Cornell University)(2023)10.48550/arxiv.2302.10907
N/A
0DataRank · unranked
12 citations

Jian Liu, Yanli Wang, Mengrui Chen, Duolin Wang, Dong Xu +2 more

Enhancing AlphaFold-Multimer-based Protein Complex Structure Prediction with MULTICOM in CASP15

Research Square(2023)10.21203/rs.3.rs-2963209/v1
N/A
0DataRank · unranked
3 citations

Zhiye Guo, Tianqi Wu, Raj S. Roy, Farhan Quadir, Chen Chen +2 more

Improving AlphaFold2-based Protein Tertiary Structure Prediction with MULTICOM in CASP15

Research Square(2023)10.21203/rs.3.rs-2962687/v1
N/A
0DataRank · unranked
2 citations

Zhiye Guo, Tianqi Wu, Raj S. Roy, Chen Chen, Jianlin Cheng +1 more

Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.08.531814
N/A
0DataRank · unranked
1 citations

Raj S. Roy, Jian Liu, Nabin Giri, Zhiye Guo, Jianlin Cheng

Diffusion models in bioinformatics and computational biology

Nature Reviews Bioengineering(2023)10.1038/s44222-023-00114-9
N/A
0DataRank · unranked
130 citations

Jian Liu, Yanli Wang, Mengrui Chen, Duolin Wang, Dong Xu +2 more

DeepDist: real-value inter-residue distance prediction with deep residual convolutional network

BMC Bioinformatics(2021)10.1186/s12859-021-03960-9
N/A
0DataRank · unranked
53 citations

Zhiye Guo, Jie Hou, Jianlin Cheng, Tianqi Wu

Improving deep learning-based protein distance prediction in CASP14

Bioinformatics(2021)10.1093/bioinformatics/btab355
N/A
0DataRank · unranked
20 citations

Tianqi Wu, Jian Liu, Jie Hou, Jianlin Cheng, Zhiye Guo