🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Yatish Turakhia

University of San Diego

ORCID: 0000-0001-5600-2900

Also affiliated with University of California San Diego

Biochemistry, Genetics and Molecular BiologyMedicineAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
4.7Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees

Molecular Biology and Evolution(2021)10.1093/molbev/msab264
Top 6%
3.8DataRank
Top 6%121 citations

Bryan Thornlow, Angie S. Hinrichs, Alexander Krämer, Nicola De Maio, Nick Goldman +4 more

Papers

Driven by 19 papers — median percentile 87. Top paper: “A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees”.

A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees

Molecular Biology and Evolution(2021)10.1093/molbev/msab264
Top 6%
3.8DataRank
Top 6%121 citations

Bryan Thornlow, Angie S. Hinrichs, Alexander Krämer, Nicola De Maio, Nick Goldman +4 more

matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2

Bioinformatics(2022)10.1093/bioinformatics/btac401
N/A
1.4DataRank · unranked
40 citations

Bryan Thornlow, Angie S. Hinrichs, Alexander Krämer, Cade Mirchandani, Devika Torvi +4 more

phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010056
N/A
1.0DataRank · unranked
35 citations

William Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett‐Detig +2 more

A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.03.438321
Top 21%
0.990DataRank
Top 21%18 citations

Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Nick Goldman, David Haussler +3 more

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.05.438352
N/A
0.554DataRank · unranked
7 citations

Angie S. Hinrichs, Miten Jain, Namrita Dhillon, Scott La, Joshua D. Kapp +17 more

SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine learning method

10.1101/2023.05.26.542489
N/A
0.208DataRank · unranked
3 citations

Michelle Su, Angie S. Hinrichs, Jade Wang, Helly Amin, John Bell +9 more

Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Approaches

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.02.471004
N/A
0DataRank · unranked
11 citations

Alexander Krämer, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S. Hinrichs +4 more

Pandemic-scale phylogenetics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.03.470766
N/A
0DataRank · unranked
6 citations

Bryan Thornlow, Alexander Krämer, Jakob McBroome, Angie S. Hinrichs, Russell Corbett‐Detig +2 more

Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape

Nature(2022)10.1038/s41586-022-05189-9
N/A
0DataRank · unranked
163 citations

Bryan Thornlow, Angie S. Hinrichs, Jakob McBroome, Nicolás Ayala, Cheng Ye +6 more

phastSim: efficient simulation of sequence evolution for pandemic-scale datasets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435416
N/A
0DataRank · unranked
11 citations

William Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett‐Detig +2 more

Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic

Nature Genetics(2021)10.1038/s41588-021-00862-7
N/A
0DataRank · unranked
472 citations

Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Landen Gozashti, Robert Lanfear +3 more

Identifying SARS-CoV-2 regional introductions and transmission clusters in real time

Virus Evolution(2022)10.1093/ve/veac048
N/A
0DataRank · unranked
25 citations

Jennifer Martin, Adriano de Bernardi Schneider, Yatish Turakhia, Russell Corbett-Detig, Jakob McBroome

Maximum likelihood pandemic-scale phylogenetics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.22.485312
N/A
0DataRank · unranked
13 citations

Prabhav Kalaghatgi, Yatish Turakhia, Russell Corbett-Detig, Bui Quang Minh, Nick Goldman +1 more

Maximum likelihood pandemic-scale phylogenetics

Nature Genetics(2023)10.1038/s41588-023-01368-0
N/A
0DataRank · unranked
69 citations

Prabhav Kalaghatgi, Yatish Turakhia, Russell Corbett-Detig, Bui Quang Minh, Nick Goldman +1 more

Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations

Systematic Biology(2023)10.1093/sysbio/syad031
N/A
0DataRank · unranked
21 citations

Bryan Thornlow, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S. Hinrichs +4 more

Whole-genome Comparisons Identify Repeated Regulatory Changes Underlying Convergent Appendage Evolution in Diverse Fish Lineages

Molecular Biology and Evolution(2023)10.1093/molbev/msad188
N/A
0DataRank · unranked
4 citations

Yatish Turakhia, Gill Bejerano, David M. Kingsley, Heidi I. Chen

Whole-genome comparisons identify repeated regulatory changes underlying convergent appendage evolution in diverse fish lineages

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.30.526059
N/A
0DataRank · unranked
1 citations

Yatish Turakhia, Gill Bejerano, David M. Kingsley, Heidi I. Chen

Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2500553122
N/A
0DataRank · unranked
12 citations

Siavash Mirarab, Yatish Turakhia, Anshu Gupta

Stability of SARS-CoV-2 phylogenies

PLoS Genetics(2020)10.1371/journal.pgen.1009175
N/A
0DataRank · unranked
133 citations

Nicola De Maio, Bryan Thornlow, Landen Gozashti, Robert Lanfear, Conor R. Walker +9 more