Wonpil Im

University of Kansas

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 69 papers. Top paper: “CHARMM‐GUI: A web‐based graphical user interface for CHARMM”.

CHARMM‐GUI: A web‐based graphical user interface for CHARMM

Journal of Computational Chemistry(2008)10.1002/jcc.20945

N/A

1.4DataRank · unranked

9432 citations

Taehoon Kim, Vidyashankara G. Iyer, Wonpil Im, Vidyashankara Iyer, Sunhwan Jo

S-Palmitoylation and Sterol Interactions Mediate Antiviral Specificity of IFITMs

ACS Chemical Biology(2022)10.1021/acschembio.2c00176

N/A

1.3DataRank · unranked

40 citations

Xinglin Yang, Hwa-Young Lee, Emma H. Garst, Estefania Valencia, Kartik Chandran +3 more

Molecular architecture of the Gαi-bound TRPC5 ion channel

Nature Communications(2023)10.1038/s41467-023-38281-3

N/A

1.1DataRank · unranked

35 citations

Jinsung Kim, Hyeongseop Jeong, Jinhyeong Kim, Shasha Feng, Byeongseok Jeong +6 more

S-palmitoylation and sterol interactions mediate antiviral specificity of IFITM isoforms

Research Square(2021)10.21203/rs.3.rs-1179000/v1

N/A

0.360DataRank · unranked

10 citations

Xinglin Yang, Hwa-Young Lee, Emma H. Garst, Estefania Valencia, Kartik Chandran +3 more

Cooperativity in Proteasome Core Particle Maturation

iScience(2020)10.1016/j.isci.2020.101090

N/A

0.316DataRank · unranked

6 citations

Pushpa Itagi, Alicia Burris, Faith Mi Ge Kim, Alexander Vontz, Anupama Kante +5 more

Click-Based Determination of Accumulation of Molecules in Escherichia coli

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.20.545103

N/A

0.269DataRank · unranked

5 citations

Zichen Liu, Shasha Feng, Mahendra D. Chordia, Rachita Dash, Yuchen He +9 more

Structural basis for the association of PLEKHA7 with membrane-embedded phosphatidylinositol lipids

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.25.387084

N/A

0DataRank · unranked

2 citations

Yong Yao, Amer Iftikhar, Andrey A. Bobkov, Jinghua Yu, G. Cadwell +8 more

Biomechanical characterization of SARS-CoV-2 spike RBD and human ACE2 protein-protein interaction

Biophysical Journal(2021)10.1016/j.bpj.2021.02.007

N/A

0DataRank · unranked

141 citations

Chuqiao Dong, Seonghan Kim, Decheng Hou, Wanbo Tai, Lanying Du +3 more

Additive CHARMM36 Force Field for Nonstandard Amino Acids

Journal of Chemical Theory and Computation(2021)10.1021/acs.jctc.1c00254

N/A

0DataRank · unranked

134 citations

Sang‐Jun Park, Anmol Kumar, Jumin Lee, Wonpil Im, Alexander D. MacKerell +2 more

Differential Interactions between Human ACE2 and Spike RBD of SARS-CoV-2 Variants of Concern

Journal of Chemical Theory and Computation(2021)10.1021/acs.jctc.1c00965

N/A

0DataRank · unranked

84 citations

Yi Liu, Zewei Lei, J. W. Dicker, Yiwei Cao, X. Frank Zhang +2 more

CHARMM‐GUI Drude prepper for molecular dynamics simulation using the classical Drude polarizable force field

Journal of Computational Chemistry(2021)10.1002/jcc.26795

N/A

0DataRank · unranked

57 citations

Jumin Lee, Sang‐Jun Park, Sunhwan Jo, Payal Chatterjee, Justin A. Lemkul +4 more

Developing initial conditions for simulations of asymmetric membranes: a practical recommendation

Biophysical Journal(2021)10.1016/j.bpj.2021.10.009

N/A

0DataRank · unranked

43 citations

Wonpil Im, Richard W. Pastor, Soohyung Park

Structural basis for the association of PLEKHA7 with membrane-embedded phosphatidylinositol lipids

Structure(2021)10.1016/j.str.2021.03.018

N/A

0DataRank · unranked

24 citations

Yong Yao, Amer Iftikhar, Andrey A. Bobkov, Jinghua Yu, G. Cadwell +8 more

CHARMM-GUI Ligand Designer for Template-Based Virtual Ligand Design in a Binding Site

Journal of Chemical Information and Modeling(2021)10.1021/acs.jcim.1c01156

N/A

0DataRank · unranked

20 citations

Sang‐Jun Park, Yiwei Cao, Wonpil Im, Hugo Guterres

Conformationally flexible core-bearing detergents with a hydrophobic or hydrophilic pendant: Effect of pendant polarity on detergent conformation and membrane protein stability

Acta Biomaterialia(2021)10.1016/j.actbio.2021.04.043

N/A

0DataRank · unranked

19 citations

Seonghoon Kim, Hyoung Eun Bae, Haoqing Wang, Andreas Nygaard, Yuki Uegaki +15 more

Location and Conformational Ensemble of Menaquinone and Menaquinol, and Protein–Lipid Modulations in Archaeal Membranes

The Journal of Physical Chemistry B(2021)10.1021/acs.jpcb.1c01930

N/A

0DataRank · unranked

12 citations

Ruixing Wang, Richard W. Pastor, Jeffery B. Klauda, Wonpil Im, Shasha Feng

Differential Interactions Between Human ACE2 and Spike RBD of SARS-CoV-2 Variants of Concern

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.23.453598

N/A

0DataRank · unranked

39 citations

Yi Liu, Zewei Lei, J. W. Dicker, Yiwei Cao, Xiao Hui Zhang +2 more

CHARMM-GUI Membrane Builder for Lipid Nanoparticles with Ionizable Cationic Lipids and PEGylated Lipids

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.23.449544

N/A

0DataRank · unranked

6 citations

Yeol Kyo Choi, Seonghoon Kim, Jumin Lee, Wonpil Im, Soohyung Park

Dynamic Interactions of Fully Glycosylated SARS-CoV-2 Spike Protein with Various Antibodies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.10.443519

N/A

0DataRank · unranked

1 citations

Yeol Kyo Choi, Martin Frank, Hyeonuk Woo, Sang‐Jun Park, Min Sun Yeom +3 more

Activation mechanism of the mouse cold-sensing TRPM8 channel by cooling agonist and PIP 2

Science(2022)10.1126/science.add1268

N/A

0DataRank · unranked

104 citations

Feng Zhang, Shasha Feng, Kevin John Butay, Mario J. Borgnia, Wonpil Im +2 more

Binding of human ACE2 and RBD of Omicron enhanced by unique interaction patterns among SARS‐CoV ‐2 variants of concern

Journal of Computational Chemistry(2022)10.1002/jcc.27025

N/A

0DataRank · unranked

79 citations

Yi Liu, Matthew Ziarnik, Sangjae Seo, Yiwei Cao, X. Frank Zhang +2 more

CHARMM‐GUIhigh‐throughput simulator for efficient evaluation of protein–ligand interactions with different force fields

Protein Science(2022)10.1002/pro.4413

N/A

0DataRank · unranked

43 citations

Sang‐Jun Park, Han Zhang, Thomas Perone, Jongtaek Kim, Wonpil Im +1 more

CHARMM‐GUI Enhanced Sampler for various collective variables and enhanced sampling methods

Protein Science(2022)10.1002/pro.4446

N/A

0DataRank · unranked

27 citations

Shasha Feng, Hwa-Young Lee, Han Zhang, Sang‐Jun Park, Seonghan Kim +4 more

Foldable Detergents for Membrane Protein Study: Importance of Detergent Core Flexibility in Protein Stabilization

Chemistry - A European Journal(2022)10.1002/chem.202200116

N/A

0DataRank · unranked

19 citations

Seonghoon Kim, Haoqing Wang, Hyun Sung Lee, Jonas S. Mortensen, Satoshi Katsube +10 more

Modulation of TRPV2 by endogenous and exogenous ligands: A computational study

Protein Science(2022)10.1002/pro.4490

N/A

0DataRank · unranked

9 citations

Ruth A. Pumroy, Anna D. Protopopova, Vera Y. Moiseenkova‐Bell, Wonpil Im, Shasha Feng

Calcium-induced environmental adaptability of the blood protein vitronectin

Biophysical Journal(2022)10.1016/j.bpj.2022.08.044

N/A

0DataRank · unranked

5 citations

Kyungsoo Shin, Alexander E. Aleshin, Wonpil Im, Francesca M. Marassi, Ye Tian

Binding of Human ACE2 and RBD of Omicron Enhanced by Unique Interaction Patterns Among SARS-CoV-2 Variants of Concern

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.24.477633

N/A

0DataRank · unranked

39 citations

Yi Liu, Matthew Ziarnik, Yiwei Cao, Xiao Hui Zhang, Wonpil Im +1 more

Binding Free Energies of Piezo1 Channel Agonists at Protein-Membrane Interface

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.27.497657

N/A

0DataRank · unranked

2 citations

Han Zhang, Yichun-Lin, Wonpil Im, Jerome J. Lacroix, Yun Luo +1 more

Calcium-induced environmental adaptability of the blood protein vitronectin

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.10.483860

N/A

0DataRank · unranked

0 citations

Kyungsoo Shin, Alexander E. Aleshin, Wonpil Im, Francesca M. Marassi, Ye Tian

CHARMM-GUI PDB Manipulator: Various PDB Structural Modifications for Biomolecular Modeling and Simulation

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.167995

N/A

0DataRank · unranked

156 citations

Nathan R. Kern, Turner Brown, Jumin Lee, Wonpil Im, Sang‐Jun Park

TRPV4-Rho GTPase complex structures reveal mechanisms of gating and disease

Nature Communications(2023)10.1038/s41467-023-39345-0

N/A

0DataRank · unranked

78 citations

Feng Zhang, Brett A. McCray, Shasha Feng, Meha Kumar, Jeremy M. Sullivan +4 more

Molecular basis of polyspecific drug and xenobiotic recognition by OCT1 and OCT2

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01017-4

N/A

0DataRank · unranked

64 citations

Nicholas J. Wright, Hugo Guterres, Justin G. Fedor, Kevin John Butay, Mario J. Borgnia +3 more

Understanding the molecular mechanisms of odorant binding and activation of the human OR52 family

Nature Communications(2023)10.1038/s41467-023-43983-9

N/A

0DataRank · unranked

57 citations

Jungnam Bae, Seonghan Kim, Seho Lee, Hyunook Kang, Jinuk Kim +8 more

CHARMM-GUI-Based Induced Fit Docking Workflow to Generate Reliable Protein–Ligand Binding Modes

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00416

N/A

0DataRank · unranked

30 citations

Wonpil Im, Hugo Guterres

Biophysical investigation of interactions between SARS‐CoV‐2 spike protein and neuropilin‐1

Protein Science(2023)10.1002/pro.4773

N/A

0DataRank · unranked

14 citations

Wenpeng Cao, Seonghan Kim, Xinyu Cui, Matthew Ziarnik, Wonpil Im +2 more

Structural Modeling of Cytokine-Receptor-JAK2 Signaling Complexes Using AlphaFold Multimer

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00926

N/A

0DataRank · unranked

12 citations

Stanislav Cherepanov, Sang‐Jun Park, Malini Raghavan, Wonpil Im, Andrei L. Lomize +1 more

Analogs of α‐conotoxin PnIC selectively inhibit α7β2‐ over α7‐only subtype nicotinic acetylcholine receptors via a novel allosteric mechanism

The FASEB Journal(2023)10.1096/fj.202302079

N/A

0DataRank · unranked

7 citations

Sabin J. John, Linda Lucero, J. Brek Eaton, Ekta Jaiswal, Sean Christensen +8 more

Spontaneous curvature generation by peptides in asymmetric bilayers

Journal of Computational Chemistry(2023)10.1002/jcc.27261

N/A

0DataRank · unranked

8 citations

Amy Rice, Wonpil Im, Richard W. Pastor, Soohyung Park

Melamine-cored glucosides for membrane protein solubilization and stabilization: importance of water-mediated intermolecular hydrogen bonding in detergent performance

Chemical Science(2023)10.1039/d3sc03543c

N/A

0DataRank · unranked

7 citations

Seonghoon Kim, Muhammad Ehsan, Baoliang Lan, Ida H. Poulsen, Chandra Dev +8 more

One‐step site‐specific S‐alkylation of full‐length caveolin‐1: Lipidation modulates the topology of its C‐terminal domain

Protein Science(2023)10.1002/pro.4791

N/A

0DataRank · unranked

5 citations

Alain Rousseau, Thomas V. Perone, David M. LaGatta, Chan Hong, Kyle T. Root +5 more

Anillin-related Mid1 as an adaptive and multimodal contractile ring anchoring protein: A simulation study

Structure(2023)10.1016/j.str.2023.11.010

N/A

0DataRank · unranked

2 citations

Yeol Kyo Choi, Wonpil Im, Dimitrios Vavylonis, Aaron R. Hall

Molecular basis of polyspecific drug binding and transport by OCT1 and OCT2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.15.532610

N/A

0DataRank · unranked

8 citations

Nicholas J. Wright, Hugo Guterres, Justin G. Fedor, Kevin John Butay, Mario J. Borgnia +3 more

CHARMM-GUI Multicomponent Assembler for Modeling and Simulation of Complex Multicomponent Systems

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.30.555590

N/A

0DataRank · unranked

6 citations

Jumin Lee, Yeol Kyo Choi, Wonpil Im, Nathan R. Kern

Structural modeling of cytokine-receptor-JAK2 signaling complexes using AlphaFold Multimer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.14.544971

N/A

0DataRank · unranked

4 citations

Stanislav Cherepanov, Sang‐Jun Park, Malini Raghavan, Wonpil Im, Andrei L. Lomize +1 more

Anillin Related Mid1 as an Adaptive and Multimodal Contractile Ring Anchoring Protein: A Simulation Study

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.27.525865

N/A

0DataRank · unranked

0 citations

Yeol Kyo Choi, Wonpil Im, Dimitrios Vavylonis, Aaron R. Hall

CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed

The Journal of Physical Chemistry B(2024)10.1021/acs.jpcb.4c04100

N/A

0DataRank · unranked

116 citations

Steven L. Austin, Arnaud Blondel, Eric D. Boittier, Stefan Boresch, Matthias Buck +68 more

CHARMM-GUI Multicomponent Assembler for modeling and simulation of complex multicomponent systems

Nature Communications(2024)10.1038/s41467-024-49700-4

N/A

0DataRank · unranked

64 citations

Jumin Lee, Yeol Kyo Choi, Wonpil Im, Nathan R. Kern

CHARMM-GUI PDB Reader and Manipulator: Covalent Ligand Modeling and Simulation

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168554

N/A

0DataRank · unranked

32 citations

Sang‐Jun Park, Wonpil Im, Lingyang Kong

CHARMM‐GUI Membrane Builder for Lipid Droplet Modeling and Simulation

ChemPlusChem(2024)10.1002/cplu.202400013

N/A

0DataRank · unranked

24 citations

Kerney Jebrell Glover, Nathan J. Wittenberg, Wonpil Im, Stephen E. Gee

CHARMM GUI Membrane Builder for oxidized phospholipid membrane modeling and simulation

Current Opinion in Structural Biology(2024)10.1016/j.sbi.2024.102813

N/A

0DataRank · unranked

18 citations

Dane E. Santa, Brett A. Berger, Lingyang Kong, Nathan J. Wittenberg, Wonpil Im +1 more

CHARMM-GUI QM/MM Interfacer for a Quantum Mechanical and Molecular Mechanical (QM/MM) Simulation Setup: 1. Semiempirical Methods

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.4c00439

N/A

0DataRank · unranked

15 citations

Abdul Raafik Arattu Thodika, Seonghoon Kim, Kwangho Nam, Wonpil Im, Donghyuk Suh

Antiviral drug recognition and elevator-type transport motions of CNT3

Nature Chemical Biology(2024)10.1038/s41589-024-01559-8

N/A

0DataRank · unranked

10 citations

Feng Zhang, Yang Suo, Lingyang Kong, Ying Yin, Justin G. Fedor +5 more

Solid-state NMR MAS CryoProbe enables structural studies of human blood protein vitronectin bound to hydroxyapatite

Journal of Structural Biology(2024)10.1016/j.jsb.2024.108061

N/A

0DataRank · unranked

9 citations

Kyungsoo Shin, Ye Tian, Wonpil Im, Jochem Struppe, Barbara Perrone +3 more

Microfluidic measurement of the size and shape of lipid-anchored proteins

Biophysical Journal(2024)10.1016/j.bpj.2024.08.026

N/A

0DataRank · unranked

4 citations

Leah Knepper, Emily Ankrom, Gabriel R. Cuce, Lingyang Kong, Amanda Ratajczak +4 more

Binary bilayer simulations for partitioning within membranes

Methods in enzymology on CD-ROM/Methods in enzymology(2024)10.1016/bs.mie.2024.03.007

N/A

0DataRank · unranked

1 citations

Richard W. Pastor, Wonpil Im, Soohyung Park

Neuroprotective amyloid β N‐terminal peptides differentially alter human α7‐ and α7β2‐nicotinic acetylcholine (nACh) receptor single‐channel properties

British Journal of Pharmacology(2024)10.1111/bph.16381

N/A

0DataRank · unranked

2 citations

Yiwei Cao, Wonpil Im, Robert A. Nichols, Ronald J. Lukas, Andrew A. George +1 more

Molecular basis of neurosteroid and anticonvulsant regulation of TRPM3

Nature Structural & Molecular Biology(2025)10.1038/s41594-024-01463-8

N/A

0DataRank · unranked

25 citations

Cheon-Gyu Park, Shasha Feng, Ziqiang Guan, Hyuk-Joon Lee, Feng Zhang +5 more

Molecular basis of the urate transporter URAT1 inhibition by gout drugs

Nature Communications(2025)10.1038/s41467-025-60480-3

N/A

0DataRank · unranked

12 citations

Justin G. Fedor, Han Zhang, Kalina Tsolova, Xiaoyu Shi, Kedar Sharma +6 more

Dynamics of a von Willebrand Factor A1 Autoinhibitory Module with O-Linked Glycans and Its Roles in Regulation of GPIbα Binding

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.5c00925

N/A

0DataRank · unranked

5 citations

Xiao Hui Zhang, Wonpil Im, Yiwei Cao

Substrates (Acyl‐CoA and Diacylglycerol) Entry and Products (CoA and Triacylglycerol) Egress Pathways in DGAT1

Journal of Computational Chemistry(2025)10.1002/jcc.70108

N/A

0DataRank · unranked

3 citations

Wonpil Im, Hwa-Young Lee

CHARMM-GUI Bicelle Builder: An Extension of Membrane Builder for Modeling and Simulation of Bicelle Systems

Journal of Chemical Information and Modeling(2025)10.1021/acs.jcim.5c00841

N/A

0DataRank · unranked

2 citations

Nathan R. Kern, Lauren Paolucci, Alan Jaemin Jo, Christopher P. Baryiames, D. Peter Tieleman +3 more

Multiple Pendants-Bearing Triglucosides for Membrane Protein Studies: Effects of Pendant Length and Number on Micelle Interior Hydration and Protein Stability

Biomacromolecules(2025)10.1021/acs.biomac.5c00036

N/A

0DataRank · unranked

1 citations

Hong Sik Yun, Hajin Lee, Samantha Stanfield, Baoliang Lan, Kristine Salomon +11 more

Interhelical distance measurements support a hairpin conformation for Caveolin-1 in phospholipid bicelles

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.08.663041

N/A

0DataRank · unranked

0 citations

Soohyung Park, Wonpil Im, Kerney Jebrell Glover, Katrina Brandmier

Dynamic architecture of mycobacterial outer membranes revealed by all-atom simulations

eLife(2025)10.7554/elife.108644

N/A

0DataRank · unranked

0 citations

Matthieu Chavent, Wonpil Im, Turner Brown

Conformational States of the Cytoprotective Protein Bcl-xL

Biophysical Journal(2020)10.1016/j.bpj.2020.08.014

N/A

0DataRank · unranked

18 citations

Ye Tian, Yong Yao, Andrey A. Bobkov, Wonpil Im, Francesca M. Marassi +1 more

Structure, Dynamics, and Interactions of GPI-Anchored Human Glypican-1 with Heparan Sulfates in a Membrane

Glycobiology(2020)10.1093/glycob/cwaa092

N/A

0DataRank · unranked

15 citations

Yeol Kyo Choi, Jumin Lee, Xiao Hui Zhang, Aurelia R. Honerkamp‐Smith, Göran Widmalm +3 more

Biomechanical Characterization of SARS-CoV-2 Spike RBD and Human ACE2 Protein-Protein Interaction

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.31.230730

N/A

0DataRank · unranked

13 citations

Chuqiao Dong, Seungtaek Kim, Decheng Hou, Wenlin Tai, Lanying Du +3 more

Developing a Fully-glycosylated Full-length SARS-CoV-2 Spike Protein Model in a Viral Membrane

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.20.103325

N/A

0DataRank · unranked

4 citations

Sang-Jun Park, Yeol Kyo Choi, Taeyong Park, Maham Tanveer, Yiwei Cao +7 more

Site-specific lipidation enhances IFITM3 membrane interactions and antiviral activity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.11.293324

N/A

0DataRank · unranked

4 citations

Hwa-Young Lee, Tandrila Das, Shibani Bhattacharya, Avital Percher, Rafal Wiewiora +7 more