Jonathan Liu

Stanford University

MedicineComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 30 papers. Top paper: “Identification of Cell Surface Targets through Meta-analysis of Microarray Data”.

Identification of Cell Surface Targets through Meta-analysis of Microarray Data

Neoplasia(2012)10.1593/neo.12634

N/A

0.449DataRank · unranked

19 citations

Joel T. Dudley, Atul Janardhan Butte, Christopher H. Contag, Jonathan Liu, Henry Haeberle

A Foundation Model for Spatial Proteomics

arXiv (Cornell University)(2025)10.48550/arxiv.2506.03373

N/A

0.292DataRank · unranked

6 citations

Yuzhou Chang, Huaying Qiu, Yao Yu Yeo, Guillaume Jaume, Yuchen Wang +55 more

Feature-rich covalent stains for super-resolution and cleared tissue fluorescence microscopy

Science Advances(2020)10.1126/sciadv.aba4542

N/A

0DataRank · unranked

104 citations

Min Yen Lee, Jing-Ru Jhan, Aaron R. Halpern, Marcus A. Woodworth, Adam K. Glaser +7 more

FalseColor-Python: A rapid intensity-leveling and digital-staining package for fluorescence-based slide-free digital pathology

PLoS ONE(2020)10.1371/journal.pone.0233198

N/A

0DataRank · unranked

58 citations

Weisi Xie, Adam K. Glaser, Jonathan Liu, Robert Serafin

Diagnosing 12 prostate needle cores within an hour of biopsy via open-top light-sheet microscopy

Journal of Biomedical Optics(2020)10.1117/1.jbo.25.12.126502

N/A

0DataRank · unranked

23 citations

Adam K. Glaser, Funda Vakar‐Lopez, Jonathan L. Wright, Nicholas P. Reder, Jonathan Liu +2 more

Performance tradeoffs for single- and dual-objective open-top light-sheet microscope designs: a simulation-based analysis

Biomedical Optics Express(2020)10.1364/boe.397052

N/A

0DataRank · unranked

29 citations

Adam K. Glaser, Jonathan Liu, Kevin W. Bishop

Video-Mosaicked Handheld Dual-Axis Confocal Microscopy of Gliomas: An ex vivo Feasibility Study in Humans

Frontiers in Oncology(2020)10.3389/fonc.2020.01674

N/A

0DataRank · unranked

5 citations

Linpeng Wei, Patrick J. Cimino, Jonathan Liu, Nader Sanai, Yoko Fujita

A hybrid open-top light-sheet microscope for multi-scale imaging of cleared tissues

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.06.081745

N/A

0DataRank · unranked

8 citations

Kevin W. Bishop, Lindsey A. Barner, Etsuo A. Susaki, Shimpei I. Kubota, Gan Gao +32 more

FalseColor-Python: a rapid intensity-leveling and digital-staining package for fluorescence-based slide-free digital pathology

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.03.074955

N/A

0DataRank · unranked

4 citations

Weisi Xie, Adam K. Glaser, Jonathan Liu, Robert Serafin

Performance trade-offs for single- and dual-objective light-sheet microscope designs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.10.087171

N/A

0DataRank · unranked

1 citations

Adam K. Glaser, Jonathan Liu, Kevin W. Bishop

Implementation and evaluation of team science training for interdisciplinary teams in an engineering design program

Journal of Clinical and Translational Science(2021)10.1017/cts.2021.788

N/A

0DataRank · unranked

12 citations

Soyoung Kang, Katrina M. Henrikson, Jonathan Liu, Eric J. Seibel, Jennifer Sprecher +5 more

A hybrid open-top light-sheet microscope for multi-scale imaging of cleared tissues

Research Square(2021)10.21203/rs.3.rs-860253/v1

N/A

0DataRank · unranked

10 citations

Kevin W. Bishop, Lindsey A. Barner, Etsuo A. Susaki, Shimpei I. Kubota, Gan Gao +32 more

Prostate cancer risk stratification via non-destructive 3D pathology with annotation-free gland segmentation and analysis

medRxiv(2021)10.1101/2021.08.30.21262847

N/A

0DataRank · unranked

3 citations

Nicholas P. Reder, Can Koyuncu, Patrick Leo, Sarah Hawley, Hanhui Huang +18 more

A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues

Nature Methods(2022)10.1038/s41592-022-01468-5

N/A

0DataRank · unranked

178 citations

Kevin W. Bishop, Lindsey A. Barner, Etsuo A. Susaki, Shimpei I. Kubota, Gan Gao +32 more

A Projection-Domain Low-Count Quantitative SPECT Method for ɑ-Particle-Emitting Radiopharmaceutical Therapy

IEEE Transactions on Radiation and Plasma Medical Sciences(2022)10.1109/trpms.2022.3175435

N/A

0DataRank · unranked

27 citations

Nadia Benabdallah, Diane S. Abou, Brian C. Baumann, Farrokh Dehdashti, David H. Ballard +7 more

Fluorescent labeling of abundant reactive entities (FLARE) for cleared-tissue and super-resolution microscopy

Nature Protocols(2022)10.1038/s41596-021-00667-2

N/A

0DataRank · unranked

24 citations

Chenyi Mao, Adam K. Glaser, Marcus A. Woodworth, Aaron R. Halpern, Adilijiang Ali +3 more

Multiresolution nondestructive 3D pathology of whole lymph nodes for breast cancer staging

Journal of Biomedical Optics(2022)10.1117/1.jbo.27.3.036501

N/A

0DataRank · unranked

22 citations

Adam K. Glaser, Chenyi Mao, Etsuo A. Susaki, Joshua C. Vaughan, Suzanne M. Dintzis +2 more

Non-destructive 3D pathology with analysis of nuclear features for prostate cancer risk assessment

Research Square(2022)10.21203/rs.3.rs-1979367/v1

N/A

0DataRank · unranked

0 citations

Can Konyuncu, Weisi Xie, Hongyi Huang, Adam K. Glaser, Nicholas P. Reder +5 more

Nondestructive 3D pathology with analysis of nuclear features for prostate cancer risk assessment

The Journal of Pathology(2023)10.1002/path.6090

N/A

0DataRank · unranked

43 citations

Can Koyuncu, Weisi Xie, Hongyi Huang, Adam K. Glaser, Nicholas P. Reder +5 more

Artificial Intelligence–Triaged 3-Dimensional Pathology to Improve Detection of Esophageal Neoplasia While Reducing Pathologist Workloads

Modern Pathology(2023)10.1016/j.modpat.2023.100322

N/A

0DataRank · unranked

21 citations

Gan Gao, Deepti Reddi, Lydia Lan, Wynn Burke, Faisal Mahmood +3 more

Comprehensive Surface Histology of Fresh Resection Margins With Rapid Open-Top Light-Sheet (OTLS) Microscopy

IEEE Transactions on Biomedical Engineering(2023)10.1109/tbme.2023.3237267

N/A

0DataRank · unranked

19 citations

Dominie Miyasato, Lindsey A. Barner, Robert Serafin, Kevin W. Bishop, Weisi Xie +5 more

Visual Assessment of 2-Dimensional Levels Within 3-Dimensional Pathology Data Sets of Prostate Needle Biopsies Reveals Substantial Spatial Heterogeneity

Laboratory Investigation(2023)10.1016/j.labinv.2023.100265

N/A

0DataRank · unranked

11 citations

Andrew Janowczyk, Xavier Farré, Tilak Pathak, Tuomas Mirtti, Pedro L. Fernández +10 more

An end-to-end workflow for non-destructive 3D pathology

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.03.551845

N/A

0DataRank · unranked

7 citations

Lindsey A. Barner, Qinghua Han, Elena Baraznenok, Lydia Lan, Chetan Poudel +13 more

Weakly Supervised AI for Efficient Analysis of 3D Pathology Samples

arXiv (Cornell University)(2023)10.48550/arxiv.2307.14907

N/A

0DataRank · unranked

4 citations

Mane Williams, Drew F. K. Williamson, Guillaume Jaume, J. Andrew Zhang, Bowen Chen +6 more

Analysis of 3D pathology samples using weakly supervised AI

Cell(2024)10.1016/j.cell.2024.03.035

N/A

0DataRank · unranked

98 citations

Mane Williams, Drew F. K. Williamson, Sarah S. L. Chow, Guillaume Jaume, Gan Gao +14 more

An end-to-end workflow for nondestructive 3D pathology

Nature Protocols(2024)10.1038/s41596-023-00934-4

N/A

0DataRank · unranked

33 citations

Lindsey A. Barner, Qinghua Han, Elena Baraznenok, Lydia Lan, Chetan Poudel +13 more

Axially swept open-top light-sheet microscopy for densely labeled clinical specimens

Optics Letters(2024)10.1364/ol.521591

N/A

0DataRank · unranked

9 citations

Lindsey A. Barner, Elena Baraznenok, Lydia Lan, Chetan Poudel, David Brenes +6 more

Grayscale 4D Biomaterial Customization at High Resolution and Scale

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.31.578280

N/A

0DataRank · unranked

7 citations

Jeremy R. Filteau, Ryan M. Francis, Georg Jaindl, Luke Orr, Teresa L. Rapp +9 more

Innovations in Remote Teaching of Engineering Design Teams

PubMed(2024)10.18260/1-2--44779

N/A

0DataRank · unranked

1 citations

Ken Yasuhara, Per G. Reinhall, Kathleen E. Kearney, Jonathan Liu, Jonathan D. Posner +4 more

Best Overall Zone Paper: Zone IV - Innovations in Remote Teaching of Engineering Design Teams

Papers on Engineering Education Repository (American Society for Engineering Education)(2024)10.18260/1-2--46644

N/A

0DataRank · unranked

0 citations

Ken Yasuhara, Per G. Reinhall, Kathleen E. Kearney, Jonathan Liu, Jonathan D. Posner +4 more