J. Harry Caufield

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.9Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Phenotype Ontology in 2024: phenotypes around the world

Nucleic Acids Research(2023)10.1093/nar/gkad1005

Top 6%

3.9DataRank

Top 6%387 citations

Nicolas A Matentzoglu, Ben D Coleman, Eunice B Addo-Lartey, Anna V. Anagnostopoulos, Joel Anderton +95 more

Papers

Driven by 24 papers — median percentile 86. Top paper: “The Human Phenotype Ontology in 2024: phenotypes around the world”.

The Human Phenotype Ontology in 2024: phenotypes around the world

Nucleic Acids Research(2023)10.1093/nar/gkad1005

Top 6%

3.9DataRank

Top 6%387 citations

Nicolas A Matentzoglu, Ben D Coleman, Eunice B Addo-Lartey, Anna V. Anagnostopoulos, Joel Anderton +95 more

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

Nucleic Acids Research(2023)10.1093/nar/gkad1082

Top 14%

1.5DataRank

Top 14%106 citations

Kevin Schaper, Nicolas A Matentzoglu, Vincent Rubinetti, Faisal Alquaddoomi, Corey Cox +39 more

AI-readiness Criteria for Biomedical Data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.23.619844

N/A

1.2DataRank · unranked

24 citations

J. Harry Caufield, Jillian A. Parker, Mohammad Sadnan Al Manir, Edilberto Amorim, James A. Eddy +26 more

Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science

Clinical and Translational Science(2022)10.1111/cts.13302

N/A

0.694DataRank · unranked

101 citations

Sierra A. T. Moxon, Michael Bada, Matthew Brush, Richard Bruskiewich, J. Harry Caufield +19 more

BioPortal: an open community resource for sharing, searching, and utilizing biomedical ontologies

Nucleic Acids Research(2025)10.1093/nar/gkaf402

Top 40%

0.483DataRank

Top 40%14 citations

Nomi L. Harris, Michael V Dorf, Alex Skrenchuk, J. Harry Caufield, Rafael S. Gonçalves +6 more

A change language for ontologies and knowledge graphs

Database(2025)10.1093/database/baae133

N/A

0.330DataRank · unranked

8 citations

Jennifer Vendetti, Damien Goutte-Gattat, J. Harry Caufield, Graybeal, John, Nomi L. Harris +7 more

Node-degree aware edge sampling mitigates inflated classification performance in biomedical random walk-based graph representation learning

Bioinformatics Advances(2024)10.1093/bioadv/vbae036

N/A

0.330DataRank · unranked

8 citations

Lauren Rekerle, Tommaso Fontana, Peter Hansen, Elena Casiraghi, Vida Ravanmehr +12 more

Leveraging Generative AI to Accelerate Biocuration of Medical Actions for Rare Disease

medRxiv(2024)10.1101/2024.08.22.24310814

N/A

0.208DataRank · unranked

3 citations

J. Harry Caufield, Leigh C Carmody, Michael Gargano, Sabrina Toro, Trish Whetzel +10 more

A Knowledge Graph Approach to Elucidate the Role of Organellar Pathways in Disease via Biomedical Reports

Journal of Visualized Experiments(2023)10.3791/65084

N/A

0DataRank · unranked

2 citations

Dylan Steinecke, Dibakar Sigdel, Irsyad Adam, J. Harry Caufield, Vladimir Guevara-Gonzalez +8 more

Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science

UNC Libraries(2025)10.17615/rc0v-1b82

N/A

0DataRank · unranked

0 citations

Sierra A. T. Moxon, Michael Bada, Matthew Brush, Richard Bruskiewich, J. Harry Caufield +20 more

KG-Hub -- Building and Exchanging Biological Knowledge Graphs

arXiv (Cornell University)(2023)10.48550/arxiv.2302.10800

N/A

0DataRank · unranked

0 citations

Tim Putman, Kevin Schaper, Deepak R Unni, Harshad Hegde, Tiffany J. Callahan +21 more

Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning

Bioinformatics(2024)10.1093/bioinformatics/btae104

N/A

0DataRank · unranked

105 citations

Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas A Matentzoglu +7 more

Leveraging generative AI to assist biocuration of medical actions for rare disease

Bioinformatics Advances(2024)10.1093/bioadv/vbaf141

N/A

0DataRank · unranked

3 citations

J. Harry Caufield, Leigh C Carmody, Michael Gargano, Sabrina Toro, Patricia L. Whetzel +10 more

Systematic benchmarking demonstrates large language models have not reached the diagnostic accuracy of traditional rare-disease decision support tools

medRxiv(2024)10.1101/2024.07.22.24310816

N/A

0DataRank · unranked

9 citations

Leonardo Chimirri, Yasemin Bridges, Daniel Daniš, J. Harry Caufield, Michael Gargano +16 more

Consistent performance of large language models in rare disease diagnosis across ten languages and 4917 cases

EBioMedicine(2025)10.1016/j.ebiom.2025.105957

N/A

0DataRank · unranked

8 citations

J. Harry Caufield, Yasemin Bridges, Nicolas A Matentzoglu, Michael Gargano, Mario Cazalla +25 more

LinkML: an open data modeling framework

GigaScience(2025)10.1093/gigascience/giaf152

N/A

0DataRank · unranked

4 citations

Harold R. Solbrig, Nomi L. Harris, Patrick Kalita, Mark A. Miller, Sagar Patil +63 more

Gene Set Summarization using Large Language Models

arXiv (Cornell University)(2023)10.48550/arxiv.2305.13338

N/A

0DataRank · unranked

7 citations

J. Harry Caufield, Nomi L. Harris, Kim, Hyeongsik, Mungall, Christopher J., Marcin P. Joachimiak

Cardiovascular informatics: building a bridge to data harmony

Cardiovascular Research(2021)10.1093/cvr/cvab067

N/A

0DataRank · unranked

10 citations

Dibakar Sigdel, John Fu, Howard Choi, Vladimir Guevara-Gonzalez, Ding Wang +2 more

ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100700

N/A

0DataRank · unranked

14 citations

George W. Liechti, Randy M. Morgenstein, J. Harry Caufield, Ali Hosseinnia, Alla Gagarinova +12 more

Clinical Temporal Relation Extraction with Probabilistic Soft Logic Regularization and Global Inference

Proceedings of the AAAI Conference on Artificial Intelligence(2021)10.1609/aaai.v35i16.17721

N/A

0DataRank · unranked

46 citations

Yu Yan, Rujun Han, J. Harry Caufield, Kai-Wei Chang, Yizhou Sun +3 more

CREATe: Clinical Report Extraction and Annotation Technology

arXiv (Cornell University)(2021)10.48550/arxiv.2103.00562

N/A

0DataRank · unranked

0 citations

Wei-ting Chen, Bowen Zhang, David Lee, J. Harry Caufield, Kai-Wei Chang +4 more

Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes

EBioMedicine(2022)10.1016/j.ebiom.2022.104413

N/A

0DataRank · unranked

180 citations

Hannah Blau, Elena Casiraghi, Timothy Bergquist, Johanna J. Loomba, Tiffany J. Callahan +39 more

Node-degree aware edge sampling mitigates inflated classification performance in biomedical graph representation learning

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.21.517376

N/A

0DataRank · unranked

1 citations

Lauren Rekerle, Tommaso Fontana, Peter Hansen, Elena Casiraghi, Vida Ravanmehr +12 more

KG-Hub—building and exchanging biological knowledge graphs

Bioinformatics(2023)10.1093/bioinformatics/btad418

N/A

0DataRank · unranked

35 citations

Tim Putman, Kevin Schaper, Deepak R Unni, Harshad Hegde, Tiffany J. Callahan +21 more

J. Harry Caufield

Indexed papers

Top data-sharing exemplar

Papers