Rhonda Bacher

Also affiliated with University of Florida, Florida College

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 33 papers. Top paper: “Responders to low-dose ATG induce CD4+ T cell exhaustion in type 1 diabetes”.

Responders to low-dose ATG induce CD4+ T cell exhaustion in type 1 diabetes

JCI Insight(2023)10.1172/jci.insight.161812

N/A

0.917DataRank · unranked

36 citations

Kirsten E. Diggins, Lori Blanchfield, James McNichols, Daniel J. Perry, Jason O. Brant +11 more

Genetic Composition and Autoantibody Titers Model the Probability of Detecting C-Peptide Following Type 1 Diabetes Diagnosis

Diabetes(2021)10.2337/db20-0937

N/A

0.796DataRank · unranked

25 citations

Rhonda Bacher, Daniel J. Perry, C. Ramsey Grace, Kieran McGrail, Amanda L. Posgai +8 more

A Novel Single Cell RNA-seq Analysis of Non-Myeloid Circulating Cells in Late Sepsis

Frontiers in Immunology(2021)10.3389/fimmu.2021.696536

N/A

0.598DataRank · unranked

53 citations

Xiaoru Dong, Maigan A. Brusko, Lauren S. Kelly, Brittany P. Fenner, Jaimar C. Rincon +14 more

Human Regulatory T Cells From Umbilical Cord Blood Display Increased Repertoire Diversity and Lineage Stability Relative to Adult Peripheral Blood

Frontiers in Immunology(2020)10.3389/fimmu.2020.00611

N/A

0.581DataRank · unranked

47 citations

Leeana D. Peters, Willem H. Vliegen, Ahmed G Elsayed, Howard R. Seay, M. Cecilia López +9 more

The post-septic peripheral myeloid compartment reveals unexpected diversity in myeloid-derived suppressor cells

Frontiers in Immunology(2024)10.3389/fimmu.2024.1355405

N/A

0.464DataRank · unranked

13 citations

Jack R. Leary, Dijoia B. Darden, Jaimar C. Rincon, Micah Willis, Valerie E. Polcz +19 more

Normalization by distributional resampling of high throughput single-cell RNA-sequencing data

Bioinformatics(2021)10.1093/bioinformatics/btab450

N/A

0.464DataRank · unranked

21 citations

Zijian Ni, Chitrasen Mohanty, Rhonda Bacher, Christina Kendziorski, Jared Brown

Methylscaper: an R/Shiny app for joint visualization of DNA methylation and nucleosome occupancy in single-molecule and single-cell data

Bioinformatics(2021)10.1093/bioinformatics/btab438

N/A

0.446DataRank · unranked

11 citations

Marie‐Pierre L. Gauthier, Carolina Pardo‐Díaz, Russell P. Darst, Kevin Kapadia, Hadley Browder +5 more

Biomaterials‐based nanoparticles conjugated to regulatory T cells provide a modular system for localized delivery of pharmacotherapeutic agents

Journal of Biomedical Materials Research Part A(2022)10.1002/jbm.a.37442

N/A

0.406DataRank · unranked

14 citations

Judit Cserny, Chun‐Wei Wang, Benjamin Looney, Amanda L. Posgai, Rhonda Bacher +3 more

Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization

Nucleic Acids Research(2021)10.1093/nar/gkab1071

N/A

0.373DataRank · unranked

11 citations

Li‐Fang Chu, Cara Argus, Jennifer M. Bolin, Parker Knight, James A. Thomson +3 more

Identification of Unique mRNA and miRNA Expression Patterns in Bone Marrow Hematopoietic Stem and Progenitor Cells After Trauma in Older Adults

Frontiers in Immunology(2020)10.3389/fimmu.2020.01289

N/A

0.360DataRank · unranked

10 citations

Julie A. Stortz, McKenzie K. Hollen, Michael C. Cox, Camille G. Apple, Russell B. Hawkins +16 more

TRANSCRIPTOMIC DIFFERENCES IN PERIPHERAL MONOCYTE POPULATIONS IN SEPTIC PATIENTS BASED ON OUTCOME

Shock(2024)10.1097/shk.0000000000002379

N/A

0.312DataRank · unranked

6 citations

Jaimar C. Rincon, Micah L. Willis, Valerie E. Polcz, Jack R. Leary, Dijoia B. Darden +17 more

Unique lymphocyte transcriptomic profiles in septic patients with chronic critical illness

Frontiers in Immunology(2024)10.3389/fimmu.2024.1478471

N/A

0.312DataRank · unranked

5 citations

Leandro Balzano‐Nogueira, Valerie E. Polcz, Christine Rodhouse, Jack R. Leary, Dijoia B. Darden +20 more

Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis

PLoS ONE(2020)10.1371/journal.pone.0239711

N/A

0.312DataRank · unranked

7 citations

Li‐Fang Chu, Srikumar Sengupta, Ning Leng, Hadley Browder, Kevin Kapadia +10 more

Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.05.326553

N/A

0.241DataRank · unranked

4 citations

Li‐Fang Chu, Cara Argus, Jennifer M. Bolin, Parker Knight, James A. Thomson +3 more

Serological markers of exocrine pancreatic function are differentially informative for distinguishing individuals progressing to type 1 diabetes

BMJ Open Diabetes Research & Care(2025)10.1136/bmjdrc-2024-004655

N/A

0DataRank · unranked

0 citations

C. Ramsey Grace, Amanda L. Posgai, Kieran McGrail, Maigan A. Brusko, Michael J. Haller +7 more

Chromatin Remodeling and Transcriptional Silencing Define the Dynamic Innate Immune Response of Tissue Resident Macrophages After Burn Injury

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.15.654340

N/A

0DataRank · unranked

0 citations

Marie‐Pierre L. Gauthier, Aidan Higgs, Denise A. Hernandez, Mingqi Zhou, Jason O. Brant +8 more

Aberrant immune regulation and enrichment of stem-like CD8 + T cells in the pancreatic lymph node during type 1 diabetes development

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.23.655848

N/A

0DataRank · unranked

0 citations

Howard R. Seay, Justin Smith, Amanda L. Posgai, Reed Berkowitz, Clive H. Wasserfall +5 more

Penalized Linear Models for Highly Correlated High-Dimensional Immunophenotyping Data

arXiv (Cornell University)(2025)10.48550/arxiv.2504.07771

N/A

0DataRank · unranked

0 citations

Apoorva Goyal, Muxuan Liang, Maigan A. Brusko, Todd M. Brusko, Rhonda Bacher +1 more

Physiologically relevant 3D CRISPR screening enhances mechanistic insight into chemical toxicity compared to 2D screening

Toxicology(2026)10.1016/j.tox.2026.154422

N/A

0DataRank · unranked

0 citations

Zhaohan Zhu, Abderrahmane Tagmount, W. Brad Barbazuk, Rhonda Bacher, Christopher D. Vulpe +1 more

Interpretable trajectory inference with single-cell linear adaptive negative-binomial expression (scLANE) testing

Nucleic Acids Research(2025)10.1093/nar/gkaf1494

N/A

0DataRank · unranked

0 citations

Xiaoru Dong, Rhonda Bacher, Jack R Leary

CD177 modulates the function and homeostasis of tumor-infiltrating regulatory T cells

Nature Communications(2021)10.1038/s41467-021-26091-4

N/A

0DataRank · unranked

129 citations

Nicholas Borcherding, Kawther Khalid Ahmed, Andrew P. Voigt, Ajaykumar Vishwakarma, Ryan Kolb +30 more

Exocrine Pancreatic Enzymes Are a Serological Biomarker for Type 1 Diabetes Staging and Pancreas Size

Diabetes(2021)10.2337/db20-0995

N/A

0DataRank · unranked

41 citations

Clive Wasserfall, Rhonda Bacher, Daniel J. Perry, Kieran McGrail, Amanda L. Posgai +9 more

Overlapping but Disparate Inflammatory and Immunosuppressive Responses to SARS-CoV-2 and Bacterial Sepsis: An Immunological Time Course Analysis

Frontiers in Immunology(2021)10.3389/fimmu.2021.792448

N/A

0DataRank · unranked

34 citations

Ricardo Ungaro, Marvin L. Dirain, Philip A. Efron, Monty B. Mazer, Kenneth E. Remy +7 more

TCR+/BCR+ dual-expressing cells and their associated public BCR clonotype are not enriched in type 1 diabetes

Cell(2021)10.1016/j.cell.2020.11.035

N/A

0DataRank · unranked

27 citations

Wenzhao Meng, Aaron M. Rosenfeld, Daniel J. Perry, Puchong Thirawatananond, Rhonda Bacher +9 more

Identification of direct transcriptional targets of NFATC2 that promote β cell proliferation

Journal of Clinical Investigation(2021)10.1172/jci144833

N/A

0DataRank · unranked

27 citations

Sunyoung Shin, Jacob A. Herring, Rhonda Bacher, Linsin A. Smith, Chenyang Dong +16 more

Flap-enabled next-generation capture (FENGC): precision targeted single-molecule profiling of epigenetic heterogeneity, chromatin dynamics, and genetic variation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.08.515732

N/A

0DataRank · unranked

4 citations

Nancy Nabilsi, Anqi Wang, Marie‐Pierre L. Gauthier, Kevin Murray, Hassan Azari +12 more

Human immune phenotyping reveals accelerated aging in type 1 diabetes

JCI Insight(2023)10.1172/jci.insight.170767

N/A

0DataRank · unranked

33 citations

Xiaoru Dong, Daniel J. Perry, James McNichols, Puchong Thirawatananond, Amanda L. Posgai +15 more

Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.18.572214

N/A

0DataRank · unranked

1 citations

Jack R. Leary, Chuanhao Yang, Maigan A. Brusko, Todd M. Brusko, Rhonda Bacher +1 more

Interpretable Trajectory Inference with Single Cell Linear Adaptive Negative-binomial Expression (scLANE) Testing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.19.572477

N/A

0DataRank · unranked

1 citations

Xiaoru Dong, Rhonda Bacher, Jack R. Leary

Human immune phenotyping reveals accelerated aging in type 1 diabetes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.24.529902

N/A

0DataRank · unranked

0 citations

Xiaoru Dong, Daniel J. Perry, James McNichols, Puchong Thirawatananond, Amanda L. Posgai +15 more

Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference

Briefings in Bioinformatics(2024)10.1093/bib/bbae216

N/A

0DataRank · unranked

9 citations

Jack R. Leary, Chuanhao Yang, Maigan A. Brusko, Todd M. Brusko, Rhonda Bacher +1 more

Inhibition of CD226 Co-Stimulation Suppresses Diabetes Development in the NOD Mouse by Augmenting Tregs and Diminishing Effector T Cell Function

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.16.603756

N/A

0DataRank · unranked

2 citations

Puchong Thirawatananond, Leeana D. Peters, Elizabeth J. Kern, S. Vijay, Lindsey K. Sachs +7 more

The Post-Septic Peripheral Myeloid Compartment Reveals Unexpected Diversity in Myeloid-Derived Suppressor Cells

medRxiv(2024)10.1101/2024.01.05.24300902

N/A

0DataRank · unranked

0 citations

John H. Leary, Dijoia B. Darden, Jaimar C. Rincon, Micah L. Willis, Valerie E. Polcz +19 more