Smita Krishnaswamy

ORCID: 0000-0001-5823-1985

MedicineImmunology and MicrobiologyBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Exploring neurodevelopment via spatiotemporal collation of anatomical networks with NeuroSC

eLife(2024)10.7554/elife.103977

Top 100%

0DataRank

Top 100%0 citations

Sarah E. Emerson, Dhananjay Bhaskar, Manik Kuchroo, Mark W. Moyle, Pura Arroyo-Morales +6 more

Papers

Driven by 65 papers — median percentile 0. Top paper: “Transcriptomic and clonal characterization of T cells in the human central nervous system”.

Transcriptomic and clonal characterization of T cells in the human central nervous system

Science Immunology(2020)10.1126/sciimmunol.abb8786

N/A

3.6DataRank · unranked

144 citations

Le Zhang, Maggie Pecsok, Kelly Perlman, Chrysoula Zografou, Khadir Raddassi +6 more

KLF2 maintains lineage fidelity and suppresses CD8 T cell exhaustion during acute LCMV infection

Science(2025)10.1126/science.adn2337

N/A

1.3DataRank · unranked

76 citations

John Attanasio, Christine Dien, Jaiveer Singh, Emily Kessler, Leena Abdullah +17 more

Defining and benchmarking open problems in single-cell analysis

Research Square(2024)10.21203/rs.3.rs-4181617/v1

N/A

0.603DataRank · unranked

17 citations

Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt, Daniel Strobl, Nikolay S. Markov +45 more

linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells

eLife(2023)10.7554/elife.82249

N/A

0.525DataRank · unranked

13 citations

Liyun Miao, Ho‐Joon Lee, Timothy Gerson, Sarah E Dube, Valeria Schmidt +10 more

Neural Network Predicts Need for Red Blood Cell Transfusion for Patients with Acute Gastrointestinal Bleeding Admitted to the Intensive Care Unit

medRxiv(2020)10.1101/2020.05.19.20096743

N/A

0.484DataRank · unranked

6 citations

Egbert Castro, Jessie Huang, J. Kenneth Tay, Michael Simonov, Loren Laine +2 more

StrokeClassifier: Ischemic Stroke Etiology Classification by Ensemble Consensus Modeling Using Electronic Health Records

Research Square(2023)10.21203/rs.3.rs-3367169/v1

N/A

0.407DataRank · unranked

5 citations

Lee H. Schwamm, Lauren Sansing, Hooman Kamel, Adam de Havenon, Ashby C. Turner +7 more

Author Correction: Visualizing structure and transitions in high-dimensional biological data

Nature Biotechnology(2020)10.1038/s41587-019-0395-5

N/A

0.385DataRank · unranked

12 citations

David van Dijk, Zheng Wang, Scott Gigante, Daniel B. Burkhardt, William S. Chen +8 more

Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue

Genome Research(2024)10.1101/gr.278215.123

N/A

0.104DataRank · unranked

1 citations

Maximillian J. Carlino, Betty R. Lawton, Manju L. Prasad, Matthew Amodio, Courtney Gibson +5 more

Neural network predicts need for red blood cell transfusion for patients with acute gastrointestinal bleeding admitted to the intensive care unit

Scientific Reports(2021)10.1038/s41598-021-88226-3

N/A

0DataRank · unranked

31 citations

Jessie Huang, Egbert Castro, J. Kenneth Tay, Michael Simonov, Loren Laine +3 more

1-deoxysphingolipids bind to COUP-TF to modulate lymphatic and cardiac cell development

Developmental Cell(2021)10.1016/j.devcel.2021.10.018

N/A

0DataRank · unranked

24 citations

Zheng Wang, Lauriane de Fabritus, Jinglian Tao, Essa M. Saied, Ho‐Joon Lee +19 more

Generating hard-to-obtain information from easy-to-obtain information: Applications in drug discovery and clinical inference

Patterns(2021)10.1016/j.patter.2021.100288

N/A

0DataRank · unranked

7 citations

Dennis Shung, Daniel B. Burkhardt, Patrick Wong, Michael Simonov, Yu Yamamoto +5 more

Multimodal Data Visualization and Denoising with Integrated Diffusion

PubMed(2021)10.1109/mlsp52302.2021.9596214

N/A

0DataRank · unranked

20 citations

Abhinav Godavarthi, Alexander Tong, Guy Wolf, Smita Krishnaswamy, Manik Kuchroo

A reservoir of stem-like CD8 T cells in the tumor-draining lymph node maintains the ongoing anti-tumor immune response

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.27.428467

N/A

0DataRank · unranked

9 citations

Manik Kuchroo, Aarthi Venkat, Achia Khatun, Jiawei Wang, Ivana William +16 more

Data-Driven Learning of Geometric Scattering Modules for GNNs

PubMed(2021)10.1109/mlsp52302.2021.9596169

N/A

0DataRank · unranked

5 citations

Frederick Wenkel, Kincaid Macdonald, Smita Krishnaswamy, Guy Wolf, Alexander Tong

G2 stem cells orchestrate time-directed, long-range coordination of calcium signaling during skin epidermal regeneration

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.12.464066

N/A

0DataRank · unranked

4 citations

Feng Gao, Catherine Matte-Martone, Shuangshuang Du, Elizabeth Lathrop, Smirthy Ganesan +8 more

Uncovering the Topology of Time-Varying fMRI Data using Cubical Persistence

Neural Information Processing Systems(2021)10.3929/ethz-b-000462843

N/A

0DataRank · unranked

1 citations

Tristan S. Yates, Christian Bock, Karsten Borgwardt, Guy Wolf, Nicholas B. Turk‐Browne +2 more

MURAL: An Unsupervised Random Forest-Based Embedding for Electronic Health Record Data

2021 IEEE International Conference on Big Data (Big Data)(2021)10.1109/bigdata52589.2021.9672045

N/A

0DataRank · unranked

0 citations

Dennis Shung, Alexander Tong, Adrian J. Stanley, Michael Schultz, Jeffrey Ngu +4 more

The landscape of pioneer factor activity reveals the mechanisms of chromatin reprogramming and genome activation

Molecular Cell(2022)10.1016/j.molcel.2022.01.024

N/A

0DataRank · unranked

106 citations

Yin Tang, Ashley R. Bonneau, Shun Hang Chan, Mina Kojima, Mark E. Pownall +6 more

Mapping Phenotypic Plasticity upon the Cancer Cell State Landscape Using Manifold Learning

Cancer Discovery(2022)10.1158/2159-8290.cd-21-0282

N/A

0DataRank · unranked

73 citations

Beatriz P. San Juan, John G. Lock, Smita Krishnaswamy, Christine L. Chaffer, Daniel B. Burkhardt

Immune cells and their inflammatory mediators modify β cells and cause checkpoint inhibitor–induced diabetes

JCI Insight(2022)10.1172/jci.insight.156330

N/A

0DataRank · unranked

51 citations

Songyan Deng, Katherine Du, Manik Kuchroo, Daniel B. Burkhardt, Alexander Tong +15 more

Modeling uniquely human gene regulatory function via targeted humanization of the mouse genome

Nature Communications(2022)10.1038/s41467-021-27899-w

N/A

0DataRank · unranked

43 citations

Deena Emera, Kristina Yim, Severin Uebbing, Acadia A. Kocher, Martina Krenzer +6 more

Single-cell multi-modal GAN reveals spatial patterns in single-cell data from triple-negative breast cancer

Patterns(2022)10.1016/j.patter.2022.100577

N/A

0DataRank · unranked

21 citations

Scott E. Youlten, Aarthi Venkat, Beatriz P. San Juan, Christine L. Chaffer, Smita Krishnaswamy +1 more

spARC recovers human glioma spatial signaling networks with graph filtering

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.24.505139

N/A

0DataRank · unranked

7 citations

Danielle Miyagishima, Holly R. Steach, Abhinav Godavarthi, Yutaka Takeo, Phan Q. Duy +9 more

Geodesic Sinkhorn for Fast and Accurate Optimal Transport on Manifolds

arXiv (Cornell University)(2022)10.48550/arxiv.2211.00805

N/A

0DataRank · unranked

1 citations

Alexander Tong, María Ramos Zapatero, Tape, Christopher J., Guy Wolf, Smita Krishnaswamy +1 more

linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.21.501032

N/A

0DataRank · unranked

0 citations

Ho‐Joon Lee, Liyun Miao, Yin Tang, Sarah E Dube, Timothy Gerson +10 more

Diffusion Curvature for Estimating Local Curvature in High Dimensional Data

(2022)10.52202/068431-1580

N/A

0DataRank · unranked

0 citations

Dhananjay Bhaskar, Oluwadamilola Fasina, Smita Krishnaswamy, Kincaid Macdonald, Bastian Rieck +2 more

PD-1 maintains CD8 T cell tolerance towards cutaneous neoantigens

Nature(2023)10.1038/s41586-023-06217-y

N/A

0DataRank · unranked

77 citations

Noah I. Hornick, Aarthi Venkat, Ivana William, Kathryn Clulo, Srividhya Venkatesan +13 more

Trellis tree-based analysis reveals stromal regulation of patient-derived organoid drug responses

Cell(2023)10.1016/j.cell.2023.11.005

N/A

0DataRank · unranked

65 citations

Alexander Tong, James W. Opzoomer, Rhianna O’Sullivan, Ferran Cardoso Rodriguez, Jahangir Sufi +8 more

Multi-view manifold learning of human brain-state trajectories

Nature Computational Science(2023)10.1038/s43588-023-00419-0

N/A

0DataRank · unranked

41 citations

Jessie Huang, Andrew Benz, Tom Wallenstein, Guillaume Lajoie, Guy Wolf +3 more

HSV-2 triggers upregulation of MALAT1 in CD4+ T cells and promotes HIV latency reversal

Journal of Clinical Investigation(2023)10.1172/jci164317

N/A

0DataRank · unranked

24 citations

Lip Nam Loh, Holly R. Steach, Natalia Cheshenko, Paula Preston‐Hurlburt, Fengrui Zhang +9 more

Cell cycle controls long-range calcium signaling in the regenerating epidermis

The Journal of Cell Biology(2023)10.1083/jcb.202302095

N/A

0DataRank · unranked

27 citations

Dhananjay Bhaskar, Feng Gao, Catherine Matte-Martone, Shuangshuang Du, Elizabeth Lathrop +12 more

Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell data

Trends in Immunology(2023)10.1016/j.it.2023.05.003

N/A

0DataRank · unranked

8 citations

Dhananjay Bhaskar, Smita Krishnaswamy, Aarthi Venkat

Time-Inhomogeneous Diffusion Geometry and Topology

SIAM Journal on Mathematics of Data Science(2023)10.1137/21m1462945

N/A

0DataRank · unranked

3 citations

Alexander Tong, Bastian Rieck, Jessie Huang, Manik Kuchroo, Matthew Hirn +3 more

Inferring dynamic regulatory interaction graphs from time series data with perturbations

PubMed(2023)10.48550/arxiv.2306.07803

N/A

0DataRank · unranked

2 citations

Magruder, Sumner, Edward De Brouwer, Aarthi Venkat, Frederik Wenkel, Guy Wolf +2 more

Geodesic Sinkhorn For Fast and Accurate Optimal Transport on Manifolds

PubMed(2023)10.1109/mlsp55844.2023.10285995

N/A

0DataRank · unranked

4 citations

Alexander Tong, María Ramos Zapatero, Christopher J. Tape, Guy Wolf, Smita Krishnaswamy +1 more

Neurospectrum: A Geometric and Topological Deep Learning Framework for Uncovering Spatiotemporal Signatures in Neural Activity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.22.533807

N/A

0DataRank · unranked

3 citations

Yanlei Zhang, Jessica L. Moore, Feng Gao, Bastian Rieck, Guy Wolf +8 more

Inferring Metabolic States from Single Cell Transcriptomic Data via Geometric Deep Learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.05.570153

N/A

0DataRank · unranked

4 citations

Siddharth Viswanath, Yixuan He, Xitong Zhang, Natalia Ivanova, Matthew Hirn +3 more

DYMAG: Rethinking Message Passing Using Dynamical-systems-based Waveforms

arXiv (Cornell University)(2023)10.48550/arxiv.2309.09924

N/A

0DataRank · unranked

0 citations

Xingzhi Sun, Yanlei Zhang, Charles Xu, Afrasiyabi, Arman, Viswanath, Siddharth +6 more

Wire Before You Walk

(2023)10.1109/ieeeconf59524.2023.10477089

N/A

0DataRank · unranked

0 citations

Dhananjay Bhaskar, Ian Adelstein, Smita Krishnaswamy, Michael Perlmutter, Tesfa Asmara

Stem cell migration drives lung repair in living mice

Developmental Cell(2024)10.1016/j.devcel.2024.02.003

N/A

0DataRank · unranked

26 citations

Shuyu Liu, Sumner Magruder, Aleksandra Tata, Lucia Borriello, John E. McDonough +14 more

Parasympathetic neurons derived from human pluripotent stem cells model human diseases and development

Cell stem cell(2024)10.1016/j.stem.2024.03.011

N/A

0DataRank · unranked

23 citations

Kenyi Saito‐Diaz, Chia‐Wei Huang, Jessica L. McAlpine, Dong Eun Seo, D. Sumner Magruder +12 more

Learnable Filters for Geometric Scattering Modules

IEEE Transactions on Signal Processing(2024)10.1109/tsp.2024.3378001

N/A

0DataRank · unranked

6 citations

Frederik Wenkel, Dhananjay Bhaskar, Kincaid Macdonald, Jackson Grady, Michael Perlmutter +3 more

Geometric scattering on measure spaces

Applied and Computational Harmonic Analysis(2024)10.1016/j.acha.2024.101635

N/A

0DataRank · unranked

8 citations

Matthew Hirn, Smita Krishnaswamy, Deanna Needell, Michael Perlmutter, Holly R. Steach +3 more

Supervised latent factor modeling isolates cell-type-specific transcriptomic modules that underlie Alzheimer’s disease progression

Communications Biology(2024)10.1038/s42003-024-06273-8

N/A

0DataRank · unranked

7 citations

Yue Li, Yasser Iturria‐Medina, Jo Anne Stratton, Guy Wolf, Smita Krishnaswamy +3 more

Mapping the gene space at single-cell resolution with gene signal pattern analysis

Nature Computational Science(2024)10.1038/s43588-024-00734-0

N/A

0DataRank · unranked

1 citations

Sam Leone, Scott E. Youlten, Eric Fagerberg, John Attanasio, Nikhil S. Joshi +3 more

Geometry-Aware Generative Autoencoders for Warped Riemannian Metric Learning and Generative Modeling on Data Manifolds

arXiv (Cornell University)(2024)10.48550/arxiv.2410.12779

N/A

0DataRank · unranked

4 citations

Danqi Liao, Kincaid Macdonald, Yanlei Zhang, Chen Liu, Guillaume Huguet +5 more

ImageFlowNet: Forecasting Multiscale Image-Level Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images

arXiv (Cornell University)(2024)10.48550/arxiv.2406.14794

N/A

0DataRank · unranked

1 citations

Ke Xu, Liangbo L. Shen, Guillaume Huguet, Zilong Wang, Alexander Tong +6 more

Deep Multimodal Representations and Classification of First-Episode Psychosis via Live Face Processing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.07.622469

N/A

0DataRank · unranked

1 citations

Yanlei Zhang, Dhananjay Bhaskar, Vinod H. Srihari, Cenk Tek, Xian Zhang +4 more

DiffKillR: Killing and Recreating Diffeomorphisms for Cell Annotation in Dense Microscopy Images

arXiv (Cornell University)(2024)10.48550/arxiv.2410.03058

N/A

0DataRank · unranked

0 citations

Danqi Liao, Alejandro Parada-Mayorga, Alejandro Ribeiro, Marcello DiStasio, Smita Krishnaswamy +1 more

Deep Learning Unlocks the True Potential of Organ Donation after Circulatory Death with Accurate Prediction of Time-to-Death

medRxiv(2024)10.1101/2024.11.07.24316924

N/A

0DataRank · unranked

0 citations

Edward De Brouwer, Chen Liu, Smita Krishnaswamy, Ramesh Batra, Xingzhi Sun

Exploring neurodevelopment via spatiotemporal collation of anatomical networks with NeuroSC

eLife(2024)10.7554/elife.103977

Top 100%

0DataRank

Top 100%0 citations

Sarah E. Emerson, Dhananjay Bhaskar, Manik Kuchroo, Mark W. Moyle, Pura Arroyo-Morales +6 more

Alternative splicing across the C. elegans nervous system

Nature Communications(2025)10.1038/s41467-025-58293-5

N/A

0DataRank · unranked

13 citations

Erdem Varol, Alec Barrett, Rebecca M. McWhirter, Seth R. Taylor, Isabel Courtney +17 more

Deep learning unlocks the true potential of organ donation after circulatory death with accurate prediction of time-to-death

Scientific Reports(2025)10.1038/s41598-025-95079-7

N/A

0DataRank · unranked

3 citations

Edward De Brouwer, Chen Liu, Smita Krishnaswamy, Ramesh Batra, Xingzhi Sun

In vivo differentiation of embryonic cells devoid of key reprogramming factors

Cell Reports(2025)10.1016/j.celrep.2025.116498

N/A

0DataRank · unranked

1 citations

Liyun Miao, Caroline Hoppe, Curtis W. Boswell, Damir Musaev, Mario Abdelmessih +6 more

Hyperedge Representations with Hypergraph Wavelets: Applications to Spatial Transcriptomics

PubMed(2025)10.1109/icassp49660.2025.10890269

N/A

0DataRank · unranked

4 citations

Charles Xu, João F. Rocha, Chen Liu, Benjamin Hollander-Bodie, Laney Goldman +4 more

HiPoNet: A Multi-View Simplicial Complex Network for High Dimensional Point-Cloud and Single-Cell Data

arXiv (Cornell University)(2025)10.48550/arxiv.2502.07746

N/A

0DataRank · unranked

0 citations

Hiren Madhu, Dhananjay Bhaskar, Jake Kovalic, Dave Johnson, Christopher J. Tape +5 more

Endocrine-Exocrine Signaling Drives Obesity-Associated Pancreatic Ductal Adenocarcinoma

Cell(2020)10.1016/j.cell.2020.03.062

N/A

0DataRank · unranked

164 citations

Jaffarguriqbal Singh, Lauren Lawres, Kimberly Judith Dorans, Cathy Garcia, Daniel B. Burkhardt +24 more

Exploring neurodevelopment via spatiotemporal collation of anatomical networks with NeuroSC

eLife(2025)10.7554/elife.103977.3

Top 100%

0DataRank

Top 100%0 citations

Sarah E. Emerson, Dhananjay Bhaskar, Manik Kuchroo, Mark W. Moyle, Pura Arroyo-Morales +6 more

IL-7 receptor alpha defines heterogeneity and signature of human effector memory CD8+ T cells in high dimensional analysis

Cellular Immunology(2020)10.1016/j.cellimm.2020.104155

N/A

0DataRank · unranked

13 citations

Dongjoo Kim, Kristina Yim, Hong‐Jai Park, Sungyong You, Xuemei Dong +6 more

Single cell immune profiling of dengue virus patients reveals intact immune responses to Zika virus with enrichment of innate immune signatures

PLoS neglected tropical diseases(2020)10.1371/journal.pntd.0008112

N/A

0DataRank · unranked

24 citations

Matthew Amodio, Brent Vander Wyk, Bram Gerritsen, Mahesh Kumar, David van Dijk +15 more

Harmonic Alignment

Society for Industrial and Applied Mathematics eBooks(2020)10.1137/1.9781611976236.36

N/A

0DataRank · unranked

13 citations

Scott Gigante, Guy Wolf, Smita Krishnaswamy, Jay S. Stanley

Structural and developmental principles of neuropil assembly in C. elegans

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.15.992222

N/A

0DataRank · unranked

4 citations

Kristopher M Barnes, Manik Kuchroo, Alex Gonopolskiy, Leighton H. Duncan, Titas Sengupta +14 more

Interpretable Neuron Structuring with Graph Spectral Regularization

Lecture notes in computer science(2020)10.1007/978-3-030-44584-3_40

N/A

0DataRank · unranked

3 citations

David van Dijk, Jay S. Stanley, Matthew Amodio, Kristina Yim, Rebecca Muhle +4 more

Uncovering the Folding Landscape of RNA Secondary Structure with Deep\n Graph Embeddings

arXiv (Cornell University)(2020)10.48550/arxiv.2006.06885

N/A

0DataRank · unranked

2 citations

Andrew Benz, Alexander Tong, Guy Wolf, Smita Krishnaswamy, Egbert Castro

Structural and developmental principles of neuropil assembly in C. elegans

Nature(2021)10.1038/s41586-020-03169-5

N/A

0DataRank · unranked

104 citations

Kristopher M Barnes, Manik Kuchroo, Alex Gonopolskiy, Leighton H. Duncan, Titas Sengupta +14 more

Smita Krishnaswamy

Indexed papers

Top data-sharing exemplar

Papers