Fernando Vargas

Biochemistry, Genetics and Molecular BiologyEngineeringMedicineChemistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 18 papers. Top paper: “Feature-based molecular networking in the GNPS analysis environment”.

Feature-based molecular networking in the GNPS analysis environment

Nature Methods(2020)10.1038/s41592-020-0933-6

N/A

10.9DataRank · unranked

1581 citations

Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli +57 more

Reproducible molecular networking of untargeted mass spectrometry data using GNPS

Nature Protocols(2020)10.1038/s41596-020-0317-5

N/A

10.3DataRank · unranked

718 citations

Emily C. Gentry, Kerry L. McPhail, Louis‐Félix Nothias, Mélissa Nothias-Esposito, Amina Bouslimani +37 more

Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

Nature Communications(2021)10.1038/s41467-021-23953-9

N/A

6.7DataRank · unranked

328 citations

Daniel Petras, Louis‐Félix Nothias, Mingxun Wang, Allegra T. Aron, Annika Jagels +40 more

Mass spectrometry searches using MASST

Nature Biotechnology(2020)10.1038/s41587-019-0375-9

N/A

6.2DataRank · unranked

298 citations

Alan K. Jarmusch, Fernando Vargas, Alexander A. Aksenov, Julia M. Gauglitz, Kelly C. Weldon +31 more

Enhancing untargeted metabolomics using metadata-based source annotation

Nature Biotechnology(2022)10.1038/s41587-022-01368-1

N/A

2.0DataRank · unranked

79 citations

Kiana West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi +68 more

Global chemical effects of the microbiome include new bile-acid conjugations

Nature(2020)10.1038/s41586-020-2047-9

N/A

0.959DataRank · unranked

595 citations

Alexey V. Melnik, Alison Vrbanac, Ting Fu, Kathryn A. Patras, Mitchell P. Christy +53 more

ReDU: a framework to find and reanalyze public mass spectrometry data

Nature Methods(2020)10.1038/s41592-020-0916-7

N/A

0.745DataRank · unranked

143 citations

Mingxun Wang, Christine M. Aceves, Rohit S. Advani, Shaden Aguirre, Alexander A. Aksenov +39 more

Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures

Cell(2020)10.1016/j.cell.2020.07.040

N/A

0.724DataRank · unranked

124 citations

Robert H. Mills, Joshua Olson, J.R. Caldera, Gregory D. Sepich‐Poore, Marvic Carrillo-Terrazas +10 more

Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome

PLoS ONE(2020)10.1371/journal.pone.0229001

N/A

0.691DataRank · unranked

99 citations

Fernando Vargas, Antonio González, Shannon He, Peng Jiang, Pieter C. Dorrestein +7 more

Ion Identity Molecular Networking in the GNPS Environment

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.11.088948

N/A

0.477DataRank · unranked

23 citations

Daniel Petras, Louis‐Félix Nothias, Mingxun Wang, Allegra T. Aron, Annika Jagels +40 more

Reference data based insights expand understanding of human metabolomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.08.194159

N/A

0.360DataRank · unranked

10 citations

Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi, Francesca Di Ottavio +59 more

An untargeted metabolomics analysis of exogenous chemicals in human milk and transfer to the infant

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.31.486633

N/A

0.165DataRank · unranked

2 citations

Julia M. Gauglitz, Anupriya Tripathi, Fernando Vargas, Kerri Bertrand, Jae Kim +4 more

Ulcerative Colitis Host-Microbiome Response to Hyperbaric Oxygen Therapy

medRxiv(2022)10.1101/2022.01.14.22269325

N/A

0.165DataRank · unranked

2 citations

Robert H. Mills, Melissa C. Kordahi, Marvic Carrillo-Terrazas, Henrry Secaira-Morocho, Christella E. Widjaja +31 more

An untargeted metabolomics analysis of exogenous chemicals in human milk and transfer to the infant

Clinical and Translational Science(2022)10.1111/cts.13393

N/A

0DataRank · unranked

17 citations

Julia M. Gauglitz, Anupriya Tripathi, Fernando Vargas, Kerri Bertrand, Jae Kim +4 more

Reference data-set driven metabolomics

Research Square(2021)10.21203/rs.3.rs-654519/v1

N/A

0DataRank · unranked

0 citations

Kiana West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi +69 more

Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression

Cell Reports(2023)10.1016/j.celrep.2023.112997

N/A

0DataRank · unranked

80 citations

Tao Huan, Gibraan Rahman, Hui Zhi, Zhenjiang Zech Xu, Tae Gyu Oh +21 more

Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention

Advanced Biology(2022)10.1002/adbi.202101313

N/A

0DataRank · unranked

6 citations

Julia M. Gauglitz, Stephen Wandro, Kelly C. Weldon, Megan M. Doty, Kristina Stillwell +11 more

Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic

mSystems(2020)10.1128/msystems.00340-20

N/A

0DataRank · unranked

14 citations

Kathryn A. Patras, Alan K. Jarmusch, Robert H. Mills, Samuel R. Shing, Robert A. Quinn +6 more