Padmini Rangamani

Also affiliated with University of California System, University of California San Diego, Jacobs (United States)

Biochemistry, Genetics and Molecular BiologyNeurosciencePhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 74 papers. Top paper: “Membrane bending by protein phase separation”.

Membrane bending by protein phase separation

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2017435118

N/A

0.813DataRank · unranked

225 citations

Haleh Alimohamadi, Brandon Bakka, Andrea N. Trementozzi, Kasey J. Day, Nicolas L. Fawzi +3 more

Iterative community-driven development of a SARS-CoV-2 tissue simulator

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.02.019075

N/A

0.641DataRank · unranked

71 citations

Yafei Wang, Gary An, Maansi Asthana, Andrew Becker, Chase Cockrell +30 more

Nanoscale organization of Actin Filaments in the Red Blood Cell Membrane Skeleton

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.07.434292

N/A

0.269DataRank · unranked

5 citations

Haleh Alimohamadi, Kersi Pestonjamasp, Padmini Rangamani, Velia M. Fowler, Roberta B. Nowak

Biomembranes undergo complex, non-axisymmetric deformations governed by Kirchhoff–Love kinematicsand revealed by a three-dimensional computational framework

Proceedings of the Royal Society A Mathematical Physical and Engineering Sciences(2021)10.1098/rspa.2021.0246

N/A

0.120DataRank · unranked

1 citations

Xiaoxuan Zhang, Rahul Gulati, Ritvik Vasan, Krishna Garikipati, Padmini Rangamani +2 more

Liquid-like condensates mediate competition between actin branching and bundling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.23.546267

N/A

0.104DataRank · unranked

1 citations

Aravind Chandrasekaran, Liping Wang, Noel X. Yang, Eileen M. Lafer, Padmini Rangamani +2 more

Regulating cellular cyclic adenosine monophosphate: “Sources,” “sinks,” and now, “tunable valves”

WIREs Systems Biology and Medicine(2020)10.1002/wsbm.1490

N/A

0DataRank · unranked

11 citations

Padmini Rangamani, Pradipta Ghosh, Michael Getz

Cell shape regulates subcellular organelle location to control early Ca2+ signal dynamics in vascular smooth muscle cells

Scientific Reports(2020)10.1038/s41598-020-74700-x

N/A

0DataRank · unranked

39 citations

Miriam Bell, A. Ron, Mufeng Hu, Smiti Bhattacharya, Nicholas J. Wong +9 more

An Open-Source Mesh Generation Platform for Biophysical Modeling Using Realistic Cellular Geometries

Biophysical Journal(2020)10.1016/j.bpj.2019.11.3400

N/A

0DataRank · unranked

37 citations

Justin G. Laughlin, J. B. Moody, Rommie E. Amaro, J. Andrew McCammon, Michael Holst +2 more

Modeling membrane nanotube morphology: the role of heterogeneity in composition and material properties

Scientific Reports(2020)10.1038/s41598-020-59221-x

N/A

0DataRank · unranked

27 citations

Ben Ovryn, Padmini Rangamani, Haleh Alimohamadi

Applications and Challenges of Machine Learning to Enable Realistic Cellular Simulations

Frontiers in Physics(2020)10.3389/fphy.2019.00247

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0DataRank · unranked

1 citations

Meagan P. Rowan, Christopher T. Lee, Gregory R. Johnson, Padmini Rangamani, Michael Holst +1 more

Membrane bending by protein phase separation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.21.109751

N/A

0DataRank · unranked

14 citations

Haleh Alimohamadi, Brandon Bakka, Andrea N. Trementozzi, Nicolas L. Fawzi, Padmini Rangamani +2 more

Transfer function for YAP/TAZ nuclear translocation revealed through spatial systems modeling

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.14.340349

N/A

0DataRank · unranked

4 citations

Stephanie I. Fraley, Padmini Rangamani, Kiersten E. Scott

Local sensitivity analysis of the ‘Membrane shape equation’ derived from the Helfrich energy

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.26.117275

N/A

0DataRank · unranked

2 citations

A. Behzadan, Michael Holst, Padmini Rangamani

A spatial model of YAP/TAZ signaling reveals how stiffness, dimensionality, and shape contribute to emergent outcomes

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2021571118

N/A

0DataRank · unranked

198 citations

Stephanie I. Fraley, Padmini Rangamani, Kiersten E. Scott

Fund Black scientists

Cell(2021)10.1016/j.cell.2021.01.011

N/A

0DataRank · unranked

143 citations

Kristyn S. Masters, P. I. Imoukhuede, Karmella A. Haynes, Lori A. Setton, Elizabeth Cosgriff‐Hernandez +14 more

Morphological principles of neuronal mitochondria

The Journal of Comparative Neurology(2021)10.1002/cne.25254

N/A

0DataRank · unranked

41 citations

Guadalupe C. García, Thomas M. Bartol, Christopher T. Lee, Priya Khandelwal, Emily Liu +10 more

Systems modeling predicts that mitochondria ER contact sites regulate the postsynaptic energy landscape

npj Systems Biology and Applications(2021)10.1038/s41540-021-00185-7

N/A

0DataRank · unranked

38 citations

Donya Ohadi, Gülçin Pekkurnaz, Padmini Rangamani, Allen Leung

Value of models for membrane budding

Current Opinion in Cell Biology(2021)10.1016/j.ceb.2021.01.011

N/A

0DataRank · unranked

19 citations

Matthew Akamatsu, Padmini Rangamani, Christopher T. Lee

The Mechanics and Thermodynamics of Tubule Formation in Biological Membranes

The Journal of Membrane Biology(2021)10.1007/s00232-020-00164-9

N/A

0DataRank · unranked

1 citations

Can Uysalel, Padmini Rangamani, Arijit Mahapatra

Curvature-driven feedback on aggregation–diffusion of proteins in lipid bilayers

Soft Matter(2021)10.1039/d1sm00502b

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0DataRank · unranked

1 citations

David Saintillan, Padmini Rangamani, Arijit Mahapatra

Actin force generation in vesicle formation: mechanistic insights from cryo-electron tomography

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.28.450262

N/A

0DataRank · unranked

7 citations

Matthew Akamatsu, Amir Moayed, Karthik Vegesna, Ritvik Vasan, Jennifer M. Hill +5 more

Mem3DG: Modeling Membrane Mechanochemical Dynamics in 3D using Discrete Differential Geometry

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.30.466618

N/A

0DataRank · unranked

6 citations

Christopher T. Lee, Padmini Rangamani, Cuncheng Zhu

Morphological principles of neuronal mitochondria

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435547

N/A

0DataRank · unranked

5 citations

Guadalupe C. García, Thomas M. Bartol, Christopher T. Lee, P. Khandelwal, Emily Liu +10 more

A Circuit for Secretion-coupled Cellular Autonomy in Multicellular Eukaryotes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.18.436048

N/A

0DataRank · unranked

2 citations

Saptarshi Sinha, Amer Ali Abd El‐Hafeez, I‐Chung Lo, Krishna Midde, Tony Ngo +7 more

Stability Analysis of a Signaling Circuit with Dual Species of GTPase Switches

Bulletin of Mathematical Biology(2021)10.1007/s11538-021-00864-w

N/A

0DataRank · unranked

0 citations

Pradipta Ghosh, Padmini Rangamani, Lucas M. Stolerman

Bayesian parameter estimation for dynamical models in systems biology

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010651

N/A

0DataRank · unranked

92 citations

Boris Krämer, Padmini Rangamani, Nathaniel Linden-Santangeli

Mechanistic insights into actin force generation during vesicle formation from cryo-electron tomography

Developmental Cell(2022)10.1016/j.devcel.2022.04.012

N/A

0DataRank · unranked

50 citations

Matthew Akamatsu, Amir Moayed, Karthik Vegesna, Ritvik Vasan, Jennifer M. Hill +5 more

The many faces of membrane tension: Challenges across systems and scales

Biochimica et Biophysica Acta (BBA) - Biomembranes(2022)10.1016/j.bbamem.2022.183897

N/A

0DataRank · unranked

38 citations

Padmini Rangamani

Mem3DG: Modeling membrane mechanochemical dynamics in 3D using discrete differential geometry

Biophysical Reports(2022)10.1016/j.bpr.2022.100062

N/A

0DataRank · unranked

21 citations

Christopher T. Lee, Padmini Rangamani, Cuncheng Zhu

Liquid-like VASP condensates drive actin polymerization and dynamic bundling

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.09.491236

N/A

0DataRank · unranked

10 citations

Aravind Chandrasekaran, Liping Wang, Aly Ladak, Eileen M. Lafer, Padmini Rangamani +2 more

The ins and outs of membrane bending by intrinsically disordered proteins

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.17.520884

N/A

0DataRank · unranked

3 citations

Christopher T. Lee, Arjun Sangani, Justin R. Houser, Liping Wang, Eileen M. Lafer +3 more

Biophysical modeling of actin-mediated structural plasticity reveals mechanical adaptation in dendritic spines

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.06.515372

N/A

0DataRank · unranked

1 citations

Padmini Rangamani, Mayte Bonilla-Quintana

Serine-129 phosphorylation of α-synuclein is an activity-dependent trigger for physiologic protein-protein interactions and synaptic function

Neuron(2023)10.1016/j.neuron.2023.11.020

N/A

0DataRank · unranked

133 citations

Kayalvizhi Madhivanan, Brent Aulston, Lina Wang, Dube Dheeraj Prakashchand, Nicholas P. Boyer +12 more

Cristae formation is a mechanical buckling event controlled by the inner mitochondrial membrane lipidome

The EMBO Journal(2023)10.15252/embj.2023114054

N/A

0DataRank · unranked

66 citations

Christopher T. Lee, Guadalupe C. García, Arijit Mahapatra, Daniel Milshteyn, Guy Perkins +8 more

Liquid-like VASP condensates drive actin polymerization and dynamic bundling

Nature Physics(2023)10.1038/s41567-022-01924-1

N/A

0DataRank · unranked

64 citations

Aravind Chandrasekaran, Liping Wang, Aly Ladak, Eileen M. Lafer, Padmini Rangamani +2 more

The ins and outs of membrane bending by intrinsically disordered proteins

Science Advances(2023)10.1126/sciadv.adg3485

N/A

0DataRank · unranked

42 citations

Christopher T. Lee, Arjun Sangani, Justin R. Houser, Liping Wang, Eileen M. Lafer +3 more

ActuAtor, a Listeria-inspired molecular tool for physical manipulation of intracellular organizations through de novo actin polymerization

Cell Reports(2023)10.1016/j.celrep.2023.113089

N/A

0DataRank · unranked

15 citations

Elmer Rho, Christopher T. Lee, Kie Itoh, Daqi Deng, Satoshi Watanabe +8 more

Electrical signals in the ER are cell type and stimulus specific with extreme spatial compartmentalization in neurons

Cell Reports(2023)10.1016/j.celrep.2022.111943

N/A

0DataRank · unranked

21 citations

Ahmed A. Abushawish, Lauren A. Valdez, Miriam Bell, Melita Haryono, Padmini Rangamani +2 more

Formation of protein-mediated bilayer tubes is governed by a snapthrough transition

Soft Matter(2023)10.1039/d2sm01676a

N/A

0DataRank · unranked

17 citations

Padmini Rangamani, Arijit Mahapatra

Effective cell membrane tension protects red blood cells against malaria invasion

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011694

N/A

0DataRank · unranked

17 citations

Padmini Rangamani, Haleh Alimohamadi

A circuit for secretion‐coupled cellular autonomy in multicellular eukaryotic cells

Molecular Systems Biology(2023)10.15252/msb.202211127

N/A

0DataRank · unranked

14 citations

Saptarshi Sinha, Amer Ali Abd El‐Hafeez, I‐Chung Lo, Krishna Midde, Tony Ngo +7 more

Liquid-like condensates mediate competition between actin branching and bundling

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2309152121

N/A

0DataRank · unranked

22 citations

Aravind Chandrasekaran, Liping Wang, Noel X. Yang, Eileen M. Lafer, Padmini Rangamani +2 more

Membrane mechanics dictate axonal morphology and function

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.20.549958

N/A

0DataRank · unranked

7 citations

Mayte Bonilla-Quintana, Renee Pepper, Christopher T. Lee, Sumana Raychaudhuri, Siyi Ma +12 more

Cristae formation is a mechanical buckling event controlled by the inner membrane lipidome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.13.532310

N/A

0DataRank · unranked

6 citations

Christopher T. Lee, Guadalupe C. García, Arijit Mahapatra, Daniel Milshteyn, Guy Perkins +8 more

Mechanically induced topological transition of spectrin regulates its distribution in the mammalian cortex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.02.522381

N/A

0DataRank · unranked

5 citations

Mayte Bonilla-Quintana, Michele Crestani, Atsushi Fukuzawa, Padmini Rangamani, Nils C. Gauthier +1 more

Spine apparatus modulates Ca 2+ in spines through spatial localization of sources and sinks

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.22.558941

N/A

0DataRank · unranked

4 citations

Guadalupe C. García, Frédéric J. Hoerndli, Kimberly J. McCabe, Padmini Rangamani, María Hernández Mesa

Kinetic trapping organizes actin filaments within liquid-like protein droplets

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.26.542517

N/A

0DataRank · unranked

3 citations

Kristin Graham, Jeanne C. Stachowiak, Padmini Rangamani, Aravind Chandrasekaran

Mechanically induced topological transition of spectrin regulates its distribution in the mammalian cortex

Research Square(2023)10.21203/rs.3.rs-2496269/v1

N/A

0DataRank · unranked

0 citations

Mayte Bonilla-Quintana, Michele Crestani, Padmini Rangamani, Nils C. Gauthier, Andrea Ghisleni

Membrane mechanics dictate axonal pearls-on-a-string morphology and function

Nature Neuroscience(2024)10.1038/s41593-024-01813-1

N/A

0DataRank · unranked

27 citations

Mayte Bonilla-Quintana, Renee Pepper, Christopher T. Lee, Sumana Raychaudhuri, Siyi Ma +12 more

Mechanically induced topological transition of spectrin regulates its distribution in the mammalian cell cortex

Nature Communications(2024)10.1038/s41467-024-49906-6

N/A

0DataRank · unranked

16 citations

Mayte Bonilla-Quintana, Michele Crestani, Zeno Lavagnino, Camilla Galli, Padmini Rangamani +2 more

Kinetic trapping organizes actin filaments within liquid-like protein droplets

Nature Communications(2024)10.1038/s41467-024-46726-6

N/A

0DataRank · unranked

14 citations

Kristin Graham, Jeanne C. Stachowiak, Padmini Rangamani, Aravind Chandrasekaran

Biophysical Modeling of Actin-Mediated Structural Plasticity Reveals Mechanical Adaptation in Dendritic Spines

eNeuro(2024)10.1523/eneuro.0497-23.2024

N/A

0DataRank · unranked

9 citations

Padmini Rangamani, Mayte Bonilla-Quintana

A spatial model of autophosphorylation of Ca 2+ /calmodulin-dependent protein kinase II (CaMKII) predicts that the lifetime of phospho-CaMKII after induction of synaptic plasticity is greatly prolonged by CaM-trapping

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.02.578696

N/A

0DataRank · unranked

2 citations

Mariam Ordyan, Terrence J. Sejnowski, Padmini Rangamani, Mary B. Kennedy, Thomas M. Bartol

Liquid-like condensates that bind actin drive filament polymerization and bundling

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.04.592527

N/A

0DataRank · unranked

2 citations

Aravind Chandrasekaran, Daniel Mansour, Kristin Graham, Andrea Torres, Liping Wang +4 more

Particle-based simulations shed light on cytoskeleton-membrane dynamics in phagocytosis

Biophysical Journal(2024)10.1016/j.bpj.2024.03.032

N/A

0DataRank · unranked

0 citations

Padmini Rangamani, Emmet A. Francis

The evolution of systems biology and systems medicine: From mechanistic models to uncertainty quantification

arXiv (Cornell University)(2024)10.48550/arxiv.2408.05395

N/A

0DataRank · unranked

0 citations

Ali Khalilimeybodi, Nathaniel J Linden-Santangeli, Padmini Rangamani, Lingxia Qiao

Liquid-like condensates that bind actin promote assembly and bundling of actin filaments

Developmental Cell(2025)10.1016/j.devcel.2025.01.012

N/A

0DataRank · unranked

27 citations

Aravind Chandrasekaran, Daniel Mansour, Kristin Graham, Andrea Torres, Liping Wang +4 more

Nanoscale Curvature Regulates YAP/TAZ Nuclear Localization Through Nuclear Deformation and Rupture

Advanced Science(2025)10.1002/advs.202415029

N/A

0DataRank · unranked

11 citations

Einollah Sarikhani, Vrund Patel, Dhivya Pushpa Meganathan, Leah Sadr, Anum Tahir +3 more

Biophysical modeling of membrane curvature generation and curvature sensing by the glycocalyx

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2418357122

N/A

0DataRank · unranked

7 citations

Sujeong Park, Jeanne C. Stachowiak, Padmini Rangamani, Ke Xiao

A spatial model of autophosphorylation of CaMKII predicts that the lifetime of phospho-CaMKII after induction of synaptic plasticity is greatly prolonged by CaM-trapping

Frontiers in Synaptic Neuroscience(2025)10.3389/fnsyn.2025.1547948

N/A

0DataRank · unranked

6 citations

Mariam Ordyan, Terrence J. Sejnowski, Padmini Rangamani, Mary B. Kennedy, Thomas M. Bartol

Obstacles regulate membrane tension propagation to enable localized mechanotransduction

Nature Physics(2025)10.1038/s41567-025-03037-x

N/A

0DataRank · unranked

2 citations

Mayte Bonilla-Quintana, Neus Sanfeliu-Cerdán, Padmini Rangamani, Michael Krieg, Frederic Català-Castro

Local enrichment of cardiolipin to transient membrane undulations

Biophysical Journal(2025)10.1016/j.bpj.2025.06.025

N/A

0DataRank · unranked

4 citations

Kailash Venkatraman, Itay Budin, Padmini Rangamani, Christopher T. Lee

Glycocalyx-induced formation of membrane tubes

Biophysical Journal(2025)10.1016/j.bpj.2025.04.006

N/A

0DataRank · unranked

3 citations

Padmini Rangamani, Ke Xiao

Increasing certainty in systems biology models using Bayesian multimodel inference

Nature Communications(2025)10.1038/s41467-025-62415-4

N/A

0DataRank · unranked

4 citations

Hua Yu, Boris Krämer, Padmini Rangamani, Nathaniel Linden-Santangeli

Systems modeling and uncertainty quantification of AMP-activated protein kinase signaling

npj Systems Biology and Applications(2025)10.1038/s41540-025-00588-w

N/A

0DataRank · unranked

3 citations

Hua Yu, Boris Krämer, Padmini Rangamani, Nathaniel Linden-Santangeli

Spine apparatus modulates Ca2+ in spines through spatial localization of sources and sinks

The Journal of Physiology(2025)10.1113/jp286859

N/A

0DataRank · unranked

1 citations

Guadalupe C. García, Frédéric J. Hoerndli, Kimberly J. McCabe, Padmini Rangamani, María Hernández Mesa

Dynamic mechanisms for membrane skeleton transitions

Journal of Cell Science(2025)10.1242/jcs.263473

N/A

0DataRank · unranked

0 citations

Andrea Ghisleni, Nils C. Gauthier, Padmini Rangamani, Mayte Bonilla-Quintana

Synaptic spine head morphodynamics from graph grammar rules for actin dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.18.649558

N/A

0DataRank · unranked

0 citations

Thomas M. Bartol, Padmini Rangamani, Terrence J. Sejnowski, Eric Mjolsness, Matthew Hur

Principles of self-organization and load adaptation by the actin cytoskeleton during clathrin-mediated endocytosis

eLife(2020)10.7554/elife.49840

N/A

0DataRank · unranked

166 citations

Ritvik Vasan, Daniel Serwas, Michael A. Ferrin, Padmini Rangamani, David G. Drubin +1 more

Systems modeling and uncertainty quantification of AMP-activated protein kinase signaling

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.02.657503

N/A

0DataRank · unranked

0 citations

Jin Zhang, Boris Krämer, Padmini Rangamani, Nathaniel Linden-Santangeli

Phase Separation of a PKA Regulatory Subunit Controls cAMP Compartmentation and Oncogenic Signaling

Cell(2020)10.1016/j.cell.2020.07.043

N/A

0DataRank · unranked

332 citations

Tsan-Wen Lu, Lucas M. Stolerman, Brian Tenner, Jin-fan Zhang, Martin Falcke +5 more

Spatially compartmentalized phase regulation of a Ca2+-cAMP-PKA oscillatory circuit

eLife(2020)10.7554/elife.55013

N/A

0DataRank · unranked

60 citations

Michael Getz, Brian Ross, Donya Ohadi, Christopher H. Bohrer, Eric C. Greenwald +5 more

3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007756

N/A

0DataRank · unranked

75 citations

Justin G. Laughlin, Nils Angliviel de La Beaumelle, Rommie E. Amaro, J. Andrew McCammon, Ravi Ramamoorthi +3 more

Non-uniform distribution of myosin-mediated forces governs red blood cell membrane curvature through tension modulation

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007890

N/A

0DataRank · unranked

53 citations

Alyson S. Smith, Roberta B. Nowak, Velia M. Fowler, Padmini Rangamani, Haleh Alimohamadi