🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jamie H. D. Cate

QB3

ORCID: 0000-0001-5965-7902

Also affiliated with Lawrence Berkeley National Laboratory, Innovative Genomics Institute, University of California, Berkeley

Biochemistry, Genetics and Molecular BiologyEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
10.1Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Clades of huge phages from across Earth’s ecosystems

Nature(2020)10.1038/s41586-020-2007-4
Top 4%
5.6DataRank
Top 4%551 citations

Rohan Sachdeva, Lin-Xing Chen, Fred R. Ward, Patrick Munk, Audra E. Devoto +40 more

Papers

Driven by 30 papers — median percentile 96. Top paper: “eIF3d is an mRNA cap-binding protein that is required for specialized translation initiation”.

eIF3d is an mRNA cap-binding protein that is required for specialized translation initiation

Nature(2016)10.1038/nature18954
N/A
8.4DataRank · unranked
376 citations

Philip J. Kranzusch, Jennifer A. Doudna, Jamie H. D. Cate, Amy S. Y. Lee

Clades of huge phages from across Earth’s ecosystems

Nature(2020)10.1038/s41586-020-2007-4
Top 4%
5.6DataRank
Top 4%551 citations

Rohan Sachdeva, Lin-Xing Chen, Fred R. Ward, Patrick Munk, Audra E. Devoto +40 more

Structure of the bacterial ribosome at 2 Å resolution

eLife(2020)10.7554/elife.60482
Top 5%
4.5DataRank
Top 5%269 citations

Fred R. Ward, Raphaël Méheust, Omer Ad, Alanna Schepartz, Jillian F. Banfield +2 more

Functional reconstitution of human eukaryotic translation initiation factor 3 (eIF3)

Proceedings of the National Academy of Sciences(2011)10.1073/pnas.1116821108
N/A
4.5DataRank · unranked
110 citations

Aleksandar Todorovic, Jordi Querol-Audí, Yun Bai, Nancy Villa, Monica Snyder +9 more

Mitigation of chromosome loss in clinical CRISPR-Cas9-engineered T cells

Cell(2023)10.1016/j.cell.2023.08.041
N/A
3.4DataRank · unranked
190 citations

Nadav Brandes, Raymund Bueno, Marena Trinidad, Thomas Mazumder, Bingfei Yu +18 more

Two RNA-binding motifs in eIF3 direct HCV IRES-dependent translation

Nucleic Acids Research(2013)10.1093/nar/gkt510
N/A
3.0DataRank · unranked
82 citations

Jordi Querol-Audí, Stefanie A. Mortimer, Ernesto Arias-Palomo, Jennifer A. Doudna, Eva Nogales +2 more

Robust T cell activation requires an eIF3-driven burst in T cell receptor translation

eLife(2021)10.7554/elife.74272
N/A
0.950DataRank · unranked
39 citations

Lucas Ferguson, Grant H. Chin, Benjamin E. Smith, Ryan Apathy, Theodore L. Roth +6 more

Mitigation of chromosome loss in clinical CRISPR-Cas9-engineered T cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.22.533709
N/A
0.762DataRank · unranked
16 citations

Nadav Brandes, Raymund Bueno, Marena Trinidad, Thomas Mazumder, Bingfei Yu +17 more

eIF3 engages with 3’-UTR termini of highly translated mRNAs

eLife(2024)10.7554/elife.102977
N/A
0.397DataRank · unranked
9 citations

Lucas Ferguson, Marena Trinidad, Nicholas T. Ingolia, Jamie H. D. Cate, Santi Mestre-Fos

Translon: a single term for translated regions

Nature Methods(2025)10.1038/s41592-025-02810-3
N/A
0.389DataRank · unranked
11 citations

Jack A. S. Tierney, M. Mar Albà, Dmitry E. Andreev, Julie L. Aspden, John F. Atkins +164 more

JUN mRNA Translation Regulation is Mediated by Multiple 5’ UTR and Start Codon Features

bioRxiv (Cold Spring Harbor Laboratory)10.1101/2023.11.17.567602
N/A
0.116DataRank · unranked
1 citations

Eimy A. Castellanos-Silva, Gabriela Díaz-Figueroa, Jamie H. D. Cate, Angélica M. González-Sánchez

Rare ribosomal RNA sequences from archaea stabilize the bacterial ribosome

Nucleic Acids Research(2022)10.1093/nar/gkac1273
N/A
0DataRank · unranked
22 citations

Petar I. Penev, Zoe L. Watson, Jillian F. Banfield, Jamie H. D. Cate, Amos J. Nissley

Rare Ribosomal RNA Sequences from Archaea Stabilize the Bacterial Ribosome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.15.499945
N/A
0DataRank · unranked
0 citations

Petar I. Penev, Zoe L. Watson, Jillian F. Banfield, Jamie H. D. Cate, Amos J. Nissley

Selective inhibition of human translation by a drug-like compound that traps terminated protein nascent chains on the ribosome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.20.106807
N/A
0DataRank · unranked
0 citations

Stacey Tsai-Lan Chang, Fred R. Ward, Jamie H. D. Cate, Wenfei Li

A highly efficient human cell-free translation system

RNA(2023)10.1261/rna.079825.123
N/A
0DataRank · unranked
27 citations

Stacey Tsai-Lan Chang, Jamie H. D. Cate, Nikolay A. Aleksashin

“ Candidatus Nealsonbacteria” Are Likely Biomass Recycling Ectosymbionts of Methanogenic Archaea in a Stable Benzene-Degrading Enrichment Culture

Applied and Environmental Microbiology(2023)10.1128/aem.00025-23
N/A
0DataRank · unranked
20 citations

Olivia Molenda, Christopher T. Brown, Courtney R. A. Toth, Shen Guo, Fei Luo +8 more

Anionic G•U pairs in bacterial ribosomal rRNAs

RNA(2023)10.1261/rna.079583.123
N/A
0DataRank · unranked
16 citations

Zoe L. Watson, Craig L. Zirbel, Jamie H. D. Cate, Eric Westhof

The Helix-Loop-Helix motif of human EIF3A regulates translation of proliferative cellular mRNAs

PLoS ONE(2023)10.1371/journal.pone.0292080
N/A
0DataRank · unranked
3 citations

Cynthia Hermosillo, Jamie H. D. Cate, Marina P. Volegova

Structure of the Bacterial Ribosome at 2 Å Resolution

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.26.174334
N/A
0DataRank · unranked
7 citations

Fred R. Ward, Raphaël Méheust, Omer Ad, Alanna Schepartz, Jillian F. Banfield +2 more

A highly efficient human cell-free translation system

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.09.527910
N/A
0DataRank · unranked
4 citations

Stacey Tsai-Lan Chang, Jamie H. D. Cate, Nikolay A. Aleksashin

Robust T cell activation requires an eIF3-driven burst in T cell receptor translation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.04.463005
N/A
0DataRank · unranked
0 citations

Lucas Ferguson, Grant H. Chin, Benjamin E. Smith, Ryan Apathy, Theodore L. Roth +6 more

RNA elements required for the high efficiency of West Nile virus-induced ribosomal frameshifting

Nucleic Acids Research(2024)10.1093/nar/gkae1248
N/A
0DataRank · unranked
2 citations

Conner J. Langeberg, Rohan R. Shelke, Tianhao Yin, Jamie H. D. Cate, Nikolay A. Aleksashin

RNA language models predict mutations that improve RNA function

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.05.588317
N/A
0DataRank · unranked
11 citations

Marena Trinidad, Conner J. Langeberg, Hunter Nisonoff, Seyone Chithrananda, Petr Skopintsev +11 more

Selective inhibition of human translation termination by a drug-like compound

Nature Communications(2020)10.1038/s41467-020-18765-2
N/A
0DataRank · unranked
46 citations

Stacey Tsai-Lan Chang, Fred R. Ward, Jamie H. D. Cate, Wenfei Li

RNA elements required for the high efficiency of West Nile Virus-induced ribosomal frameshifting

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.16.618579
N/A
0DataRank · unranked
1 citations

Conner J. Langeberg, Rohan R. Shelke, Tianhao Yin, Jamie H. D. Cate, Nikolay A. Aleksashin

eIF3 engages with 3’-UTR termini of highly translated mRNAs

eLife(2025)10.7554/elife.102977.3
N/A
0DataRank · unranked
1 citations

Lucas Ferguson, Marena Trinidad, Nicholas T. Ingolia, Jamie H. D. Cate, Santi Mestre-Fos

Improving RNA Secondary Structure Prediction Through Expanded Training Data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.03.652028
N/A
0DataRank · unranked
1 citations

Taehan Kim, Roma Nagle, C. A. Meredith, Dimple Amitha Garuadapuri, Jennifer A. Doudna +2 more

Overcoming the eIF2α Brake in Human Cell-Derived Translation Systems

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.16.688697
N/A
0DataRank · unranked
0 citations

Rohan R. Shelke, Tianhao Yin, Jamie H. D. Cate, Nikolay A. Aleksashin

Translational Downregulation of 5’ TOP mRNAs During T Cell Exhaustion

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.15.694525
N/A
0DataRank · unranked
0 citations

Navya Ambavaram, Lucas Ferguson, Jamie H. D. Cate, Erica Suzuki Pledger

eIF3 engages with 3’-UTR termini of highly translated mRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.11.566681
N/A
0DataRank · unranked
4 citations

Lucas Ferguson, Marena Trinidad, Nicholas T. Ingolia, Jamie H. D. Cate, Santi Mestre-Fos