Shamilene Sivagnanam

MedicineBiochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 21 papers. Top paper: “Ongoing replication stress tolerance and clonal T cell responses distinguish liver and lung recurrence and outcomes in pancreatic cancer”.

Ongoing replication stress tolerance and clonal T cell responses distinguish liver and lung recurrence and outcomes in pancreatic cancer

Nature Cancer(2025)10.1038/s43018-024-00881-3

N/A

0.986DataRank · unranked

34 citations

Jennifer Eng, Carl Pelz, Kevin Hawthorne, Patrick J. Worth, Shamilene Sivagnanam +33 more

Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies

npj Precision Oncology(2021)10.1038/s41698-021-00232-w

N/A

0.953DataRank · unranked

27 citations

Allen Li, Allison Creason, Courtney B. Betts, Jamie M. Keck, Brett Johnson +23 more

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging

Nature Methods(2021)10.1038/s41592-021-01308-y

N/A

0.827DataRank · unranked

247 citations

Artem Sokolov, Clarence Yapp, Yu‐An Chen, Jeremy L. Muhlich, Joshua M. Hess +22 more

Neoadjuvant Selicrelumab, an Agonist CD40 Antibody, Induces Changes in the Tumor Microenvironment in Patients with Resectable Pancreatic Cancer

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-21-1047

N/A

0.784DataRank · unranked

185 citations

Courtney B. Betts, Rosemarie Mick, Shamilene Sivagnanam, David L. Bajor, Daniel A. Laheru +24 more

Computational methods and biomarker discovery strategies for spatial proteomics: a review in immuno-oncology

Briefings in Bioinformatics(2024)10.1093/bib/bbae421

N/A

0.780DataRank · unranked

37 citations

Shamilene Sivagnanam, Won Jin Ho, Shuming Zhang, Daniel Bergman, Atul Deshpande +6 more

Leukocyte Heterogeneity in Pancreatic Ductal Adenocarcinoma: Phenotypic and Spatial Features Associated with Clinical Outcome

Cancer Discovery(2021)10.1158/2159-8290.cd-20-0841

N/A

0.764DataRank · unranked

162 citations

Courtney B. Betts, Shamilene Sivagnanam, Vicente Morales‐Oyarvide, Annacarolina da Silva, Chen Yuan +25 more

Machine Learning Links T-cell Function and Spatial Localization to Neoadjuvant Immunotherapy and Clinical Outcome in Pancreatic Cancer

Cancer Immunology Research(2024)10.1158/2326-6066.cir-23-0873

N/A

0.718DataRank · unranked

28 citations

Shamilene Sivagnanam, Courtney B. Betts, Konjit Betre, Nell Kirchberger, Benjamin J. Tate +9 more

Modulation of myeloid and T cells in vivo by Bruton’s tyrosine kinase inhibitor ibrutinib in patients with metastatic pancreatic ductal adenocarcinoma

Journal for ImmunoTherapy of Cancer(2023)10.1136/jitc-2022-005425

N/A

0.493DataRank · unranked

11 citations

Courtney B. Betts, Li Zhang, Madeline Griffith, Isabelle G. Solman, Brandon Chen +24 more

Galaxy-ME: A Web-based Software Resource for Interactive Analysis of Multiplex Tissue Imaging Datasets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.18.504436

N/A

0.330DataRank · unranked

8 citations

Cameron Watson, Qiang Gu, Daniel Persson, Luke Sargent, Yu‐An Chen +13 more

Multi-omics analysis of serial samples from metastatic TNBC patients on PARP inhibitor monotherapy provide insight into rational PARP inhibitor therapy combinations

medRxiv(2020)10.1101/2020.07.25.20146431

N/A

0.208DataRank · unranked

3 citations

Allen Li, Allison Creason, Courtney B. Betts, Jamie M. Keck, Brett Johnson +23 more

Alignment, segmentation and neighborhood analysis in cyclic immunohistochemistry data using CASSATT

Cytometry Part B Clinical Cytometry(2023)10.1002/cyto.b.22114

N/A

0.208DataRank · unranked

3 citations

Rohit Khurana, Todd Bartkowiak, Portia Thomas, Shamilene Sivagnanam, Courtney B. Betts +5 more

Machine learning links T cell function and spatial localization to neoadjuvant immunotherapy and clinical outcome in pancreatic cancer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.20.563335

N/A

0.112DataRank · unranked

1 citations

Shamilene Sivagnanam, Courtney B. Betts, Konjit Betre, Nell Kirchberger, Benjamin J. Tate +9 more

Longitudinal and multimodal auditing of tumor adaptation to CDK4/6 inhibitors in HR+ metastatic breast cancers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.27.557464

N/A

0.104DataRank · unranked

1 citations

Julian Egger, Cameron Watson, Shamilene Sivagnanam, Koei Chin, Kevin Hawthorne +18 more

Quantitative Spatial Profiling of Immune Populations in Pancreatic Ductal Adenocarcinoma Reveals Tumor Microenvironment Heterogeneity and Prognostic Biomarkers

Cancer Research(2022)10.1158/0008-5472.can-22-1190

N/A

0DataRank · unranked

78 citations

Shamilene Sivagnanam, Courtney B. Betts, Shannon M. Liudahl, Elizabeth M. Jaffee, Lisa M. Coussens +2 more

Single-Cell Spatial Proteomics Analyses of Head and Neck Squamous Cell Carcinoma Reveal Tumor Heterogeneity and Immune Architectures Associated with Clinical Outcome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.10.434649

N/A

0DataRank · unranked

6 citations

Shamilene Sivagnanam, Grace L. Banik, Lisa M. Coussens, Jeremy Goecks, Katie E. Blise

Beyond Programmed Death-Ligand 1: B7-H6 Emerges as a Potential Immunotherapy Target in SCLC

Journal of Thoracic Oncology(2021)10.1016/j.jtho.2021.03.011

N/A

0DataRank · unranked

33 citations

Sarah M. Groves, Yun-Kai Zhang, Jia Li, Paula I. González-Ericsson, Shamilene Sivagnanam +14 more

Natural killer cells occupy unique spatial neighborhoods in HER2- and HER2+ human breast cancers

Breast Cancer Research(2025)10.1186/s13058-025-01964-4

N/A

0DataRank · unranked

4 citations

Katie E. Blise, Courtney B. Betts, Shamilene Sivagnanam, Loes Kooreman, E. Shelley Hwang +4 more

Post-transcriptional regulator HuR promotes immune evasion in pancreatic ductal adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.07.632847

N/A

0DataRank · unranked

2 citations

Jennifer M. Finan, Alexandra Q. Bartlett, Shamilene Sivagnanam, Katie E. Blise, Nell Kirchberger +11 more

Single-cell spatial architectures associated with clinical outcome in head and neck squamous cell carcinoma

npj Precision Oncology(2022)10.1038/s41698-022-00253-z

N/A

0DataRank · unranked

56 citations

Shamilene Sivagnanam, Grace L. Banik, Lisa M. Coussens, Jeremy Goecks, Katie E. Blise

Deciphering the Immune Complexity in Esophageal Adenocarcinoma and Pre-Cancerous Lesions With Sequential Multiplex Immunohistochemistry and Sparse Subspace Clustering Approach

Frontiers in Immunology(2022)10.3389/fimmu.2022.874255

N/A

0DataRank · unranked

13 citations

Eun Na Kim, G.M. Jones, Shamilene Sivagnanam, Monika Tripathi, Ahmad Miremadi +6 more

Tumor-intrinsic MHC-II activation in pancreatic ductal adenocarcinoma enhances immune response and treatment efficacy

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.21.683745

N/A

0DataRank · unranked

0 citations

Kyle P. Gribbin, Xi Li, Tugba Y. Ozmen, Furkan Ozmen, Shamilene Sivagnanam +15 more