Jonathan Chen

Also affiliated with Northwestern University, Harvard University, MGH Institute of Health Professions, Massachusetts General Hospital, Stanford Health Care, Marion General Hospital, Stanford Medicine, Massachusetts Institute of Technology

MedicineBiochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets”.

COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets

Nature(2021)10.1038/s41586-021-03570-8

N/A

10.7DataRank · unranked

879 citations

Carly G.K. Ziegler, Graham Heimberg, Rachelly Normand, Yiming Yang, Åsa Segerstolpe +95 more

Temporal and spatial heterogeneity of host response to SARS-CoV-2 pulmonary infection

Nature Communications(2020)10.1038/s41467-020-20139-7

N/A

8.5DataRank · unranked

268 citations

Azfar Neyaz, Annamária Szabolcs, Angela Shih, Jonathan Chen, Vishal Thapar +28 more

Combined PD-1, BRAF and MEK inhibition in BRAFV600E colorectal cancer: a phase 2 trial

Nature Medicine(2023)10.1038/s41591-022-02181-8

N/A

4.9DataRank · unranked

192 citations

Jonathan Chen, Sherry Chao, Karin Pelka, Marios Giannakis, Julian M. Hess +40 more

Targeting TBK1 to overcome resistance to cancer immunotherapy

Nature(2023)10.1038/s41586-023-05704-6

N/A

4.0DataRank · unranked

171 citations

Or‐Yam Revach, Seth Anderson, Emily Kessler, Clara Wolfe, Anne Jenney +54 more

Single-cell atlas of the liver myeloid compartment before and after cure of chronic viral hepatitis

Journal of Hepatology(2023)10.1016/j.jhep.2023.02.040

N/A

1.5DataRank · unranked

45 citations

Bo Li, Michael S. Wallace, Anna Gonye, Christopher Oetheimer, Hailey Patel +26 more

Spatially organized multicellular immune hubs in human colorectal cancer

Cell(2021)10.1016/j.cell.2021.08.003

N/A

1.0DataRank · unranked

787 citations

Matan Hofree, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji, Alborz Bejnood +73 more

Combined tumor and immune signals from genomes or transcriptomes predict outcomes of checkpoint inhibition in melanoma

Cell Reports Medicine(2022)10.1016/j.xcrm.2021.100500

N/A

0.972DataRank · unranked

35 citations

Moshe Sade-Feldman, Jaegil Kim, Chip Stewart, Anna Gonye, Arvind Ravi +34 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.02.508492

N/A

0.946DataRank · unranked

16 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps

Cell(2021)10.1016/j.cell.2021.11.031

N/A

0.871DataRank · unranked

332 citations

Cherie’ R. Scurrah, Eliot T. McKinley, Alan J. Simmons, Marisol A. Ramirez-Solano, Xiangzhu Zhu +48 more

Combined tumor and immune signals from genomes or transcriptomes predict outcomes of checkpoint inhibition in melanoma

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.03.450733

N/A

0.358DataRank · unranked

7 citations

Moshe Sade-Feldman, Jaegil Kim, Chip Stewart, Anna Gonye, Arvind Ravi +34 more

Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.30.426796

N/A

0.297DataRank · unranked

4 citations

Matan Hofree, Jonathan Chen, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji +71 more

Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer

The Journal of Immunology(2021)10.4049/jimmunol.206.supp.68.13

N/A

0.262DataRank · unranked

3 citations

Karin Pelka, Matan Hofree, Marios Giannakis, Genevieve M. Boland, Andrew J. Aguirre +5 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

eLife(2025)10.7554/elife.104815

N/A

0.104DataRank · unranked

1 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

Secretory MPP3 reinforce myeloid differentiation trajectory and amplify myeloid cell production

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.01.458573

N/A

0DataRank · unranked

2 citations

Hyojung Paik, Si Yi Zhang, Jonathan Chen, Matthew R. Warr, Rong Fan +2 more

Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection

medRxiv(2020)10.1101/2020.07.30.20165241

N/A

0DataRank · unranked

45 citations

Azfar Neyaz, Annamária Szabolcs, Angela Shih, Jonathan Chen, Vishal Thapar +26 more

Immune checkpoint inhibitor-associated celiac disease

Journal for ImmunoTherapy of Cancer(2020)10.1136/jitc-2020-000958

N/A

0DataRank · unranked

68 citations

Angela Shih, Donna Leet, Meghan J. Mooradian, Alexandra Coromilas, Jonathan Chen +7 more

HTAPP_Dissociation of human primary colorectal cancer resection specimens into single cell suspension for single cell RNA-seq v1

(2019)10.17504/protocols.io.batcieiw

N/A

0DataRank · unranked

0 citations

Matan Hofree, Tabea Moll, SusannahPhillips not provided, Danielle Dionne, Julia Waldman +18 more

Author response: Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

(2025)10.7554/elife.104815.3.sa2

N/A

0DataRank · unranked

0 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +26 more

HTAPP_Dissociation of human primary colorectal cancer resection specimens into single cell suspension for single cell RNA-seq v2

(2021)10.17504/protocols.io.busfnwbn

N/A

0DataRank · unranked

0 citations

Matan Hofree, Tabea Moll, SusannahPhillips not provided, Danielle Dionne, Julia Waldman +18 more

Human lung cancer harbors spatially organized stem-immunity hubs associated with response to immunotherapy

Nature Immunology(2024)10.1038/s41590-024-01792-2

N/A

0DataRank · unranked

132 citations

Linda T. Nieman, Maxwell Spurrell, Vjola Jorgji, Liad Elmelech, Peter Richieri +32 more

Powerful microscopy technologies decode spatially organized cellular networks that drive response to immunotherapy in humans

Current Opinion in Immunology(2024)10.1016/j.coi.2024.102463

N/A

0DataRank · unranked

0 citations

Liad Elmelech, Alexander L. Tang, Nir Hacohen, Jonathan Chen

Monitoring strategies for continuous evaluation of deployed clinical prediction models

Journal of Biomedical Informatics(2025)10.1016/j.jbi.2025.104854

N/A

0DataRank · unranked

3 citations

Conor K. Corbin, François Grolleau, Michael Baiocchi, Jonathan Chen, Grace Y E Kim

641 Spatially organized multicellular immune hubs in MMRd and MMRp colorectal cancer

Regular and Young Investigator Award Abstracts(2021)10.1136/jitc-2021-sitc2021.641

N/A

0DataRank · unranked

0 citations

Karin Pelka, Matan Hofree, Marios Giannakis, Prisca Liberali, Nir Hacohen +5 more