Patrick Flaherty

Also affiliated with University of Massachusetts Amherst

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 12 papers. Top paper: “Model-based identification of conditionally-essential genes from transposon-insertion sequencing data”.

Model-based identification of conditionally-essential genes from transposon-insertion sequencing data

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009273

N/A

0.344DataRank · unranked

5 citations

Berent Aldikacti, Shai He, Rilee Zeinert, Peter Chien, Patrick Flaherty +1 more

SCSIM: Jointly simulating correlated single-cell and bulk next-generation DNA sequencing data

BMC Bioinformatics(2020)10.1186/s12859-020-03550-1

N/A

0DataRank · unranked

8 citations

Harsh Vardhan Dubey, Vishal Sarsani, Hachem Saddiki, Shai He, Patrick Flaherty +1 more

A Bayesian Nonparametric Model for Inferring Subclonal Populations from Structured DNA Sequencing Data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.10.330183

N/A

0DataRank · unranked

1 citations

Aaron Schein, Vishal Sarsani, Patrick Flaherty, Shai He

Model-based identification of conditionally-essential genes from transposon-insertion sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.15.452443

N/A

0DataRank · unranked

0 citations

Berent Aldikacti, Shai He, Rilee Zeinert, Peter Chien, Patrick Flaherty +1 more

Identification of Significant Gene Expression Changes in Multiple Perturbation Experiments using Knockoffs

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.18.464822

N/A

0DataRank · unranked

0 citations

Guangyu Zhu, Patrick Flaherty, Tingting Zhao

Identification of significant gene expression changes in multiple perturbation experiments using knockoffs

Briefings in Bioinformatics(2023)10.1093/bib/bbad084

N/A

0DataRank · unranked

6 citations

Guangyu Zhu, Harsh Vardhan Dubey, Patrick Flaherty, Tingting Zhao

Development of a biomarker prediction model for post-trauma multiple organ failure/dysfunction syndrome based on the blood transcriptome

Annals of Intensive Care(2024)10.1186/s13613-024-01364-5

N/A

0DataRank · unranked

5 citations

Ankita Banerjee, Patrick Flaherty, Yok‐Ai Que, Colleen M. Ryan, Laurence G. Rahme +2 more

Discovering Genetic Modulators of the Protein Homeostasis System through Multilevel Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.26.582154

N/A

0DataRank · unranked

1 citations

Berent Aldikacti, Tingting Zhao, Shai He, Peter Chien, Patrick Flaherty +1 more

Doubly Non-Central Beta Matrix Factorization for Stable Dimensionality Reduction of Bounded Support Matrix Data

arXiv (Cornell University)(2024)10.48550/arxiv.2410.18425

N/A

0DataRank · unranked

0 citations

Patrick Flaherty, Aaron Schein, Albert, Anjali N.

Discovering genetic modulators of the protein homeostasis system through multilevel analysis

PNAS Nexus(2024)10.1093/pnasnexus/pgae574

N/A

0DataRank · unranked

0 citations

Berent Aldikacti, Tingting Zhao, Shai He, Peter Chien, Patrick Flaherty +1 more

Targeted Metabolomic Profiling Reveals Association Between Altered Amino Acids and Poor Functional Recovery After Stroke

Frontiers in Neurology(2020)10.3389/fneur.2019.01425

N/A

0DataRank · unranked

21 citations

Tao Liu, Haixin Song, Shaoyang Cui, Gang Liu, Andrea Christoforou +5 more

Stress testing reveals selective vulnerabilities in protein homeostasis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.11.659168

N/A

0DataRank · unranked

0 citations

Hidayet Putun, Vishal Sarsani, Rilee Zeinert, Patrick Flaherty, Peter Chien +1 more