Denis Wirtz

Also affiliated with Johns Hopkins Medicine

Biochemistry, Genetics and Molecular BiologyMedicineEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 38 papers. Top paper: “Inactivation of Arid1a in the endometrium is associated with endometrioid tumorigenesis through transcriptional reprogramming”.

Inactivation of Arid1a in the endometrium is associated with endometrioid tumorigenesis through transcriptional reprogramming

Nature Communications(2020)10.1038/s41467-020-16416-0

N/A

0DataRank · unranked

91 citations

Wenjing Shen, Xu Shi, Xi Chen, Yu Yu, Zheng-Cheng Yu +13 more

Dynamic organelle distribution initiates actin-based spindle migration in mouse oocytes

Nature Communications(2020)10.1038/s41467-019-14068-3

N/A

0DataRank · unranked

78 citations

Yizeng Li, Kexi Yi, Fengli Guo, Haiyang Wang, Pei-Hsun Wu +8 more

Dorsoventral polarity directs cell responses to migration track geometries

Science Advances(2020)10.1126/sciadv.aba6505

N/A

0DataRank · unranked

67 citations

Panagiotis Mistriotis, Kaustav Bera, Robert A. Law, Jitao Zhang, Miloš Nikolić +11 more

Single Cell Volume Measurement Utilizing the Fluorescence Exclusion Method (FXm)

BIO-PROTOCOL(2020)10.21769/bioprotoc.3652

N/A

0DataRank · unranked

9 citations

Kai Yao, Nicolas Perez Gonzalez, Denis Wirtz, Sean X. Sun, Nash D. Rochman

Three‐dimensional analysis of extrahepatic cholangiocarcinoma and tumor budding

The Journal of Pathology(2020)10.1002/path.5474

N/A

0DataRank · unranked

34 citations

Seung‐Mo Hong, DongJun Jung, Michaël Noë, Ashley Kiemen, Pei‐Hsun Wu +5 more

Particle tracking microrheology of cancer cells in living subjects

Materials Today(2020)10.1016/j.mattod.2020.03.021

N/A

0DataRank · unranked

33 citations

Sanjiv S. Gambhir, Christopher M. Hale, Wei-Chiang Chen, Denis Wirtz, Bryan Ronain Smith +1 more

Deep Learning Identification of Stiffness Markers in Breast Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.17.423077

N/A

0DataRank · unranked

3 citations

Joo Ho Kim, Ashley Kiemen, Pei‐Hsun Wu, Mehran Habibi, Marissa J. White +4 more

Fractional re-distribution among cell motility states during ageing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.29.069286

N/A

0DataRank · unranked

1 citations

Nahuel Zamponi, Madonna P. Phillip, Jena Daya, Shaun McGovern, Wadsworth A. Williams +6 more

Extracellular vesicles in immunomodulation and tumor progression

Nature Immunology(2021)10.1038/s41590-021-00899-0

N/A

0DataRank · unranked

601 citations

Bartholomew Starich, Denis Wirtz, Carolyn Marar

Use of the p-values as a size-dependent function to address practical differences when analyzing large datasets

Scientific Reports(2021)10.1038/s41598-021-00199-5

N/A

0DataRank · unranked

100 citations

Vanesa Guerrero, Alexandra Sneider, Hasini Jayatilaka, Jude M. Phillip, Denis Wirtz +2 more

Fractional re-distribution among cell motility states during ageing

Communications Biology(2021)10.1038/s42003-020-01605-w

N/A

0DataRank · unranked

21 citations

Nahuel Zamponi, Madonna P. Phillip, Jena Daya, Shaun McGovern, Wadsworth A. Williams +6 more

Senescent stroma induces nuclear deformations in cancer cells via the inhibition of RhoA/ROCK/myosin II-based cytoskeletal tension

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.17.468902

N/A

0DataRank · unranked

1 citations

Jude M. Philip, Byoung Choul Kim, Teresa Romeo Luperchio, Ángela María Jiménez, Tânia Perestrelo +6 more

CODA: quantitative 3D reconstruction of large tissues at cellular resolution

Nature Methods(2022)10.1038/s41592-022-01650-9

N/A

0DataRank · unranked

182 citations

Alicia M. Braxton, Mia P. Grahn, Kyu Sang Han, Jaanvi Mahesh Babu, Rebecca Reichel +14 more

Deep learning identification of stiffness markers in breast cancer

Biomaterials(2022)10.1016/j.biomaterials.2022.121540

N/A

0DataRank · unranked

29 citations

Ashley Kiemen, Joo Ho Kim, Pei-Hsun Wu, Mehran Habibi, Marissa J. White +4 more

Engineered bispecific antibodies targeting the interleukin-6 and -8 receptors potently inhibit cancer cell migration and tumor metastasis

Molecular Therapy(2022)10.1016/j.ymthe.2022.07.008

N/A

0DataRank · unranked

29 citations

Michelle N. Karl, Wentao Wang, Bartholomew Starich, Haotian Tan, Ashley Kiemen +9 more

Intraparenchymal metastases as a cause for local recurrence of pancreatic cancer

Histopathology(2022)10.1111/his.14839

N/A

0DataRank · unranked

16 citations

Young Geun Choi, Alicia M. Braxton, Cristina Almagro Pérez, Sarah E. Graham, Mia P. Grahn +7 more

PanIN and CAF Transitions in Pancreatic Carcinogenesis Revealed with Spatial Data Integration

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.16.500312

N/A

0DataRank · unranked

15 citations

Jacob T. Mitchell, Ashley Kiemen, Kohei Fujikura, Helen Fedor, Bonnie Gambichler +15 more

Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces

Cell Systems(2023)10.1016/j.cels.2023.03.004

N/A

0DataRank · unranked

40 citations

Melanie Loth, Dimitrios N. Sidiropoulos, Shuming Zhang, Long Yuan, Alexander T.F. Bell +25 more

Tumor proliferation and invasion are intrinsically coupled and unraveled through tunable spheroid and physics-based models

Acta Biomaterialia(2023)10.1016/j.actbio.2023.12.043

N/A

0DataRank · unranked

18 citations

Clara Gomez‐Cruz, Gabriella C. Russo, Wilson Huang, Isha Bhorkar, Triya Roy +4 more

Mechanotransductive feedback control of endothelial cell motility and vascular morphogenesis

(2023)10.7554/elife.86668.1

N/A

0DataRank · unranked

4 citations

Megan E. Goeckel, Sebastián L. Vega, Pei‐Hsun Wu, Dymonn Johnson, Su‐Jin Heo +7 more

Three-dimensional genomic mapping of human pancreatic tissue reveals striking multifocality and genetic heterogeneity in precancerous lesions

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.27.525553

N/A

0DataRank · unranked

8 citations

Ashley Kiemen, Mia P. Grahn, André Forjaz, Jaanvi Mahesh Babu, Lily Zheng +36 more

Serine synthesis pathway upregulated by E-cadherin is essential for the proliferation and metastasis of breast cancers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.24.541452

N/A

0DataRank · unranked

4 citations

Claudia Wong, Anna Cho, Junior J. West, Ashleigh J. Crawford, Gabriella C. Russo +11 more

Small extracellular vesicles promote stiffness-mediated metastasis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.01.545937

N/A

0DataRank · unranked

1 citations

Ying Liu, Bartholomew Starich, Wenxuan Du, Carolyn Marar, Najwa Faqih +19 more

Mechanotransductive feedback control of endothelial cell motility and vascular morphogenesis

eLife(2023)10.7554/elife.86668

N/A

0DataRank · unranked

0 citations

Paula Camacho, Megan E. Goeckel, Brendan Tobin, Sebastián L. Vega, Pei‐Hsun Wu +9 more

PanIN and CAF transitions in pancreatic carcinogenesis revealed with spatial data integration

Cell Systems(2024)10.1016/j.cels.2024.07.001

N/A

0DataRank · unranked

52 citations

Jacob T. Mitchell, Ashley Kiemen, Melissa R. Lyman, Kohei Fujikura, Jae W. Lee +22 more

E-Cadherin Induces Serine Synthesis to Support Progression and Metastasis of Breast Cancer

Cancer Research(2024)10.1158/0008-5472.can-23-3082

N/A

0DataRank · unranked

36 citations

Claudia Wong, Anna Cho, Junior J. West, Ashleigh J. Crawford, Gabriella C. Russo +11 more

Combined assembloid modeling and 3D whole-organ mapping captures the microanatomy and function of the human fallopian tube

Science Advances(2024)10.1126/sciadv.adp6285

N/A

0DataRank · unranked

25 citations

André Forjaz, Joanna Bons, Isha Bhorkar, Triya Roy, David Schell +14 more

Small Extracellular Vesicles Promote Stiffness-mediated Metastasis

Cancer Research Communications(2024)10.1158/2767-9764.crc-23-0431

N/A

0DataRank · unranked

24 citations

Ying Liu, Bartholomew Starich, Wenxuan Du, Praful R. Nair, Carolyn Marar +19 more

3D histology reveals that immune response to pancreatic precancers is heterogeneous and depends on global pancreas structure

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.03.606493

N/A

0DataRank · unranked

8 citations

Cristina Almagro-Pérez, Valentina Matos, André Forjaz, Alicia M. Braxton, Lucie Dequiedt +14 more

A disrupted compartment boundary underlies abnormal cardiac patterning and congenital heart defects

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.05.578995

N/A

0DataRank · unranked

5 citations

Martin H. Dominguez, Kavitha S. Rao, Jonathon M. Muncie, W. Patrick Devine, Kevin Hu +16 more

Mechanotransductive feedback control of endothelial cell motility and vascular morphogenesis

eLife(2024)10.7554/elife.86668.2

N/A

0DataRank · unranked

1 citations

Paula Camacho, Megan E. Goeckel, Brendan Tobin, Sebastián L. Vega, Pei‐Hsun Wu +9 more

Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories

Cell(2025)10.1016/j.cell.2025.06.048

N/A

0DataRank · unranked

42 citations

Daniel Bergman, Heber L. Rocha, David Zhou, Eric Cramer, Ian C. McLean +42 more

Spatial proteomics and transcriptomics reveal early immune cell organization in pancreatic intraepithelial neoplasia

JCI Insight(2025)10.1172/jci.insight.191595

N/A

0DataRank · unranked

10 citations

Jacob T. Mitchell, Sidharth Raghavan, Luciane T. Kagohara, Amanda L. Huff, Saurav D. Haldar +29 more

Senescent cell heterogeneity and responses to senolytic treatment are related to cell cycle status during senescence induction

Aging(2025)10.18632/aging.206299

N/A

0DataRank · unranked

5 citations

Shuyuan Zheng, Mark A. Watson, Pierre-Yves Desprez, Akos A. Gerencser, Judith Campisi +4 more

Precision targeting of autoreactive B cells in systemic lupus erythematosus using anti-9G4 idiotope synthetic immune receptor T cells

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.19.682634

N/A

0DataRank · unranked

5 citations

Yuanxuan Xia, Brian J. Mog, Colin Gliech, Elana Shaw, Dylan P. Ferris +25 more

PIVOT: an open-source tool for multi-omic spatial data registration

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.08.658506

N/A

0DataRank · unranked

4 citations

Valentina Matos Romero, Ian Reucroft, Margaret Eminizer, Donald Kramer, Daniela Higuera +19 more

NLTD 2.0: A Nonlinear Framework for Robust and Customizable Color Deconvolution in Histopathology

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.02.679756

N/A

0DataRank · unranked

0 citations

Jude M. Phillip, Denis Wirtz, Pei-Hsun Wu, Florin M. Selaru

Mechanotransductive feedback control of endothelial cell motility and vascular morphogenesis

eLife(2025)10.7554/elife.86668.3

N/A

0DataRank · unranked

0 citations

Paula Camacho, Megan E. Goeckel, Brendan Tobin, Sebastián L. Vega, Pei‐Hsun Wu +9 more