🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Brian Munsky

Colorado State University

ORCID: 0000-0001-6147-7329

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 19 papers. Top paper: “Live-cell imaging reveals the spatiotemporal organization of endogenous RNA polymerase II phosphorylation at a single gene”.

Live-cell imaging reveals the spatiotemporal organization of endogenous RNA polymerase II phosphorylation at a single gene

Nature Communications(2021)10.1038/s41467-021-23417-0

N/A

1.5DataRank · unranked

61 citations

William Raymond, Tetsuya Handa, Matthew N. Saxton, Tatsuya Morisaki, Hiroshi Kimura +4 more

Ten simple rules for managing laboratory information

PLOS Computational Biology(2023)10.1371/journal.pcbi.1011652

N/A

0.292DataRank · unranked

6 citations

Luis U. Aguilera, Sonja Billerbeck, Philip E. Bourne, Douglas Densmore, Paul Freemont +19 more

Optimal Design of Single-Cell Experiments within Temporally Fluctuating Environments

Complexity(2020)10.1155/2020/8536365

N/A

0DataRank · unranked

7 citations

Gregor Neuert, Brian Munsky, Zachary Fox

Live-cell imaging reveals the spatiotemporal organization of endogenous RNA polymerase II phosphorylation at a single gene

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.03.024414

N/A

0DataRank · unranked

9 citations

William Raymond, Tetsuya Handa, Matthew N. Saxton, Tatsuya Morisaki, Hiroshi Kimura +4 more

A Parallel Implementation of the Finite State Projection Algorithm for the Solution of the Chemical Master Equation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.30.180273

N/A

0DataRank · unranked

3 citations

Brian Munsky, Huy D. Vo

Diverse cell stimulation kinetics identify predictive signal transduction models

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.28.923755

N/A

0DataRank · unranked

0 citations

Zachary Fox, Jason J Hughes, Guoliang Li, Brian Munsky, Gregor Neuert +1 more

Probabilistic Ranking Of Microbiomes Plus Taxa Selection to discover and validate microbiome function models for multiple litter decomposition studies

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.17.209031

N/A

0DataRank · unranked

0 citations

Nicholas Lubbers, Marie Kroeger, Rae DeVan, Renee Johansen, John Dunbar +2 more

Visualization and Modeling of Inhibition of IL-1β and TNF-α mRNA Transcription at the Single-Cell Level

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.16.342576

N/A

0DataRank · unranked

0 citations

Huy D. Vo, Samantha Adikari, Elizabeth Hong‐Geller, Brian Munsky, James H. Werner +1 more

Visualization and modeling of inhibition of IL-1β and TNF-α mRNA transcription at the single-cell level

Scientific Reports(2021)10.1038/s41598-021-92846-0

N/A

0DataRank · unranked

19 citations

Huy D. Vo, Samantha Adikari, Elizabeth Hong‐Geller, Brian Munsky, James H. Werner +1 more

Building predictive signaling models by perturbing yeast cells with time-varying stimulations resulting in distinct signaling responses

STAR Protocols(2021)10.1016/j.xpro.2021.100660

N/A

0DataRank · unranked

9 citations

Zachary Fox, Brian Munsky, Gregor Neuert, Hossein Jashnsaz

Analysis and design of single-cell experiments to harvest fluctuation information while rejecting measurement noise

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.11.443611

N/A

0DataRank · unranked

0 citations

Linda Forero, Luis U. Aguilera, Brian Munsky, Huy D. Vo

Biochemical noise enables a single optogenetic input to control identical cells to track asymmetric and asynchronous reference signals

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.05.498842

N/A

0DataRank · unranked

0 citations

Brian Munsky, Michael P. May

Analysis and design of single-cell experiments to harvest fluctuation information while rejecting measurement noise

Frontiers in Cell and Developmental Biology(2023)10.3389/fcell.2023.1133994

N/A

0DataRank · unranked

13 citations

Linda S. Forero-Quintero, Luis U. Aguilera, Brian Munsky, Huy D. Vo

Using mechanistic models and machine learning to design single-color multiplexed nascent chain tracking experiments

Frontiers in Cell and Developmental Biology(2023)10.3389/fcell.2023.1151318

N/A

0DataRank · unranked

3 citations

Sadaf Ghaffari, Luis U. Aguilera, Eric Ron, Tatsuya Morisaki, Zachary Fox +4 more

Identification of potential riboswitch elements in Homo Sapiens mRNA 5’UTR sequences using Positive-Unlabeled machine learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.23.568398

N/A

0DataRank · unranked

0 citations

Jacob DeRoo, Brian Munsky, William Raymond

Characterization of Guest DNA Transport and Adsorption within Host Porous Protein Crystals

Langmuir(2024)10.1021/acs.langmuir.4c02960

N/A

0DataRank · unranked

1 citations

Julius D. Stuart, Brian Munsky, Christopher D. Snow, S. R. Wayne Chen

Sequential design of single-cell experiments to identify discrete stochastic models for gene expression

PubMed(2024)10.1109/cdc56724.2024.10886397

N/A

0DataRank · unranked

2 citations

Eric Ron, Dmitri Svetlov, Luis U. Aguilera, Brian Munsky, Joshua Cook

MicroLive: An Image Processing Toolkit for Quantifying Live-cell Single-Molecule Microscopy

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.25.678587

N/A

0DataRank · unranked

0 citations

William Raymond, Rhiannon M. Sears, Nathan L. Nowling, Brian Munsky, Ning Zhao +1 more

Diverse Cell Stimulation Kinetics Identify Predictive Signal Transduction Models

iScience(2020)10.1016/j.isci.2020.101565

N/A

0DataRank · unranked

9 citations

Zachary Fox, Jason J Hughes, Guoliang Li, Brian Munsky, Gregor Neuert +1 more