Amy J. Pickering

Also affiliated with Chan Zuckerberg Biohub San Francisco, Chan Zuckerberg Initiative (United States), University of California, Berkeley

NursingEnvironmental ScienceMedicineHealth Professions

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 42 papers. Top paper: “StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities”.

StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities

Genome biology(2022)10.1186/s13059-022-02630-0

N/A

0.710DataRank · unranked

113 citations

Bruce J. Walker, Timothy J. Straub, Colin J. Worby, Alexandra Grote, Henry L. Schreiber +7 more

Longitudinal Effects of a Sanitation Intervention on Environmental Fecal Contamination in a Cluster-Randomized Controlled Trial in Rural Bangladesh

Environmental Science & Technology(2021)10.1021/acs.est.1c01114

N/A

0.592DataRank · unranked

22 citations

Mahfuza Islam, Andrew Mertens, Amy J. Pickering, Laura H. Kwong, Benjamin F. Arnold +11 more

Drinking water chlorination has minor effects on the intestinal flora and resistomes of Bangladeshi children

Nature Microbiology(2022)10.1038/s41564-022-01101-3

N/A

0.529DataRank · unranked

33 citations

Val F. Lanza, María Camila Montealegre, Sonia Sultana, Erica R. Fuhrmeister, Colin J. Worby +11 more

Influence of community-level sanitation coverage and population density on environmental fecal contamination and child health in a longitudinal cohort in rural Bangladesh

International Journal of Hygiene and Environmental Health(2022)10.1016/j.ijheh.2022.114031

N/A

0.520DataRank · unranked

31 citations

Mahfuza Islam, Andrew Mertens, Amy J. Pickering, Laura H. Kwong, Benjamin F. Arnold +11 more

Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform

Genome Medicine(2025)10.1186/s13073-025-01480-2

N/A

0.449DataRank · unranked

12 citations

Katrina Kalantar, Abigail Glascock, Victoria Chu, Estella Sanchez Guerrero, Nina Bernick +19 more

Evaluation of an on-site sanitation intervention against childhood diarrhea and acute respiratory infection 1 to 3.5 years after implementation: Extended follow-up of a cluster-randomized controlled trial in rural Bangladesh

PLoS Medicine(2022)10.1371/journal.pmed.1004041

N/A

0.442DataRank · unranked

18 citations

Mahfuza Islam, Andrew Mertens, Amy J. Pickering, Benjamin F. Arnold, Jade Benjamin‐Chung +7 more

Plugging the leaks: antibiotic resistance at human–animal interfaces in low‐resource settings

Frontiers in Ecology and the Environment(2023)10.1002/fee.2639

N/A

0.396DataRank · unranked

13 citations

Marc Stegger, Roberto Viau, Yith Vuthy, Agathe de Lauzanne, Nita Sem +18 more

Context-Seq: CRISPR-Cas9 targeted nanopore sequencing for transmission dynamics of antimicrobial resistance

Nature Communications(2025)10.1038/s41467-025-60491-0

N/A

0.377DataRank · unranked

9 citations

Sooyeol Kim, Shruteek A. Mairal, Caroline McCormack, Benard Chieng, Jenna M. Swarthout +4 more

StrainGE: A toolkit to track and characterize low-abundance strains in complex microbial communities

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.14.431013

N/A

0.360DataRank · unranked

10 citations

Bruce J. Walker, Timothy J. Straub, Colin J. Worby, Alexandra Grote, Henry L. Schreiber +7 more

Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline

Research Square(2024)10.21203/rs.3.rs-4271356/v1

N/A

0.330DataRank · unranked

8 citations

Dan Lu, Katrina Kalantar, Victoria Chu, Abigail Glascock, E. R. Guerrero +19 more

Soil surveillance for monitoring soil-transmitted helminth infections: method development and field testing in three countries

10.1101/2023.09.26.23296174

N/A

0.292DataRank · unranked

6 citations

Heather K. Amato, Nils Pilotte, Benard Chieng, Sylvie B. Araka, Joël Edoux Eric Siko +20 more

Leakiness at the human-animal interface in Southeast Asia and implications for the spread of antibiotic resistance

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435134

N/A

0.208DataRank · unranked

3 citations

Marc Stegger, Roberto Viau, Yith Vuthy, Agathe de Lauzanne, Nita Sem +18 more

Role of the gut microbiome in frequent gut colonization with extended-spectrum β lactamase-producing Enterobacterales among Peruvian children

Gut Microbes(2025)10.1080/19490976.2025.2541029

N/A

0.208DataRank · unranked

3 citations

Neha Sehgal, Luismarcelo Rojas-Salvatierra, Robert H. Gilman, Ashlee M. Earl, Colin J. Worby +4 more

Effects of commonly used antibiotics on children’s developing gut microbiomes and resistomes in peri-urban Lima, Peru

Journal of Antimicrobial Chemotherapy(2025)10.1093/jac/dkaf358

N/A

0.104DataRank · unranked

1 citations

Mónica J. Pajuelo, Robert H. Gilman, Amy J. Pickering, Ashlee M. Earl, Colin J. Worby +2 more

Improved Child Feces Management Mediates Reductions in Childhood Diarrhea from an On-Site Sanitation Intervention: Causal Mediation Analysis of a Cluster-Randomized Trial in Rural Bangladesh

Journal of Epidemiology and Global Health(2024)10.1007/s44197-024-00210-y

N/A

0DataRank · unranked

4 citations

Mahfuza Islam, Andrew Mertens, Amy J. Pickering, Benjamin F. Arnold, Jade Benjamin‐Chung +7 more

Context-Seq: CRISPR-Cas9 Targeted Nanopore Sequencing for Transmission Dynamics of Antimicrobial Resistance

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.12.612745

N/A

0DataRank · unranked

4 citations

Sooyeol Kim, Shruteek A. Mairal, Caroline McCormack, Benard Chieng, Jenna M. Swarthout +4 more

Bacterial strain sharing between humans, animals, and the environment among urban households

medRxiv(2024)10.1101/2024.08.05.24311509

N/A

0DataRank · unranked

2 citations

Jenna M. Swarthout, Colin J. Worby, Benard Chieng, John Mboya, Ashlee M. Earl +3 more

Environmental surveillance of soil-transmitted helminths and other enteric pathogens in settings without networked wastewater infrastructure

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.15.613066

N/A

0DataRank · unranked

0 citations

Kendra Joy Dahmer, Zayina Zondervenni Manoharan, Ajithkumar Muthukumar, Heather K. Amato, Christopher LeBoa +14 more

Effects of commonly used antibiotics on children’s developing gut microbiomes and resistomes in peri-urban Lima, Peru

medRxiv(2024)10.1101/2024.12.13.24317790

N/A

0DataRank · unranked

0 citations

Mónica J. Pajuelo, Robert H. Gilman, Amy J. Pickering, Ashlee M. Earl, Colin J. Worby +2 more

Contaminated drinking water facilitates Escherichia coli strain-sharing within households in urban informal settlements

Nature Microbiology(2025)10.1038/s41564-025-01986-w

N/A

0DataRank · unranked

22 citations

Jenna M. Swarthout, Colin J. Worby, Benard Chieng, John Mboya, Ashlee M. Earl +3 more

Associations between weather extremes and faecal contamination along pathogen transmission pathways in rural Bangladeshi households: a prospective observational study

The Lancet Planetary Health(2025)10.1016/s2542-5196(24)00306-1

N/A

0DataRank · unranked

10 citations

Mahfuza Islam, Anna Nguyen, Jessica A. Grembi, Andrew Mertens, Amy J. Pickering +13 more

Environmental surveillance of soil-transmitted helminths and other enteric pathogens in settings without networked wastewater infrastructure

PLOS Water(2025)10.1371/journal.pwat.0000337

N/A

0DataRank · unranked

5 citations

Kendra Joy Dahmer, Zayina Zondervenni Manoharan, Ajithkumar Muthukumar, Heather K. Amato, Christopher LeBoa +14 more

Associations between floor material and E. coli contamination in rural Bangladeshi households

International Journal of Hygiene and Environmental Health(2025)10.1016/j.ijheh.2025.114641

N/A

0DataRank · unranked

2 citations

M. S. Islam, Amy J. Pickering, Laura H. Kwong, Andrew Mertens, Caitlin Niven +12 more

Longitudinal Monitoring of SARS-CoV-2 RNA on High-Touch Surfaces in a Community Setting

Environmental Science & Technology Letters(2020)10.1021/acs.estlett.0c00875

N/A

0DataRank · unranked

188 citations

Erica R. Fuhrmeister, Molly E. Cantrell, Ana K. Pitol, Jenna M. Swarthout, Julie E. Powers +4 more

Associations between floor material and E. coli contamination in rural Bangladeshi households

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.07.652756

N/A

0DataRank · unranked

0 citations

M. S. Islam, Amy J. Pickering, Laura H. Kwong, Andrew Mertens, Caitlin Niven +12 more

Biomarkers of environmental enteric dysfunction and neurodevelopmental outcomes among children in rural Bangladesh and Kenya: a prospective cohort study

American Journal of Clinical Nutrition(2025)10.1016/j.ajcnut.2025.05.034

N/A

0DataRank · unranked

0 citations

Beryl S. Achando, Shahjahan Ali, Caitlin Hemlock, Helen O. Pitchik, Christine P. Stewart +33 more

Examining the effect of neighborhood sanitation coverage on childhood diarrheal disease in rural Bangladesh

International Journal of Hygiene and Environmental Health(2025)10.1016/j.ijheh.2025.114732

N/A

0DataRank · unranked

0 citations

Andrew F. Brouwer, Jesse Contreras, Mahbubur Rahman, M. S. Islam, Amy J. Pickering +7 more

Rainfall and temperature influence effectiveness of on-site sanitation intervention against E. coli contamination in Bangladeshi households

International Journal of Hygiene and Environmental Health(2025)10.1016/j.ijheh.2025.114731

N/A

0DataRank · unranked

0 citations

M. S. Islam, Anna Nguyen, Andrew Mertens, Amy J. Pickering, Laura H. Kwong +13 more

Wastewater surveillance reveals patterns of antibiotic resistance across the United States

medRxiv(2025)10.1101/2025.04.02.25325128

N/A

0DataRank · unranked

4 citations

Alessandro Zulli, Elana M. G. Chan, Dorothea Duong, Rebecca Y. Linfield, Caroline McCormack +5 more

Shared bacterial communities between soil, stored drinking water, and hands in rural Bangladeshi households

Water Research X(2020)10.1016/j.wroa.2020.100056

N/A

0DataRank · unranked

13 citations

Ayşe Ercümen, Jessica A. Grembi, Mahfuza Islam, Amy J. Pickering, Kara L. Nelson +1 more

Can breastfeeding protect against antimicrobial resistance?

BMC Medicine(2020)10.1186/s12916-020-01862-w

N/A

0DataRank · unranked

32 citations

Claire D. Bourke, Ruairi C. Robertson, Elisabeth Delarocque‐Astagneau, Amee R. Manges, Amy J. Pickering +1 more

Child defecation and feces management practices in rural Bangladesh: Associations with fecal contamination, observed hand cleanliness and child diarrhea

PLoS ONE(2020)10.1371/journal.pone.0236163

N/A

0DataRank · unranked

23 citations

Mahbubur Rahman, Leanne Unicomb, Mohammad Abdullah Heel Kafi, Md Mostafizur Rahman, Mahfuja Alam +9 more

Longitudinal monitoring of SARS-CoV-2 RNA on high-touch surfaces in a community setting

medRxiv(2020)10.1101/2020.10.27.20220905

N/A

0DataRank · unranked

33 citations

Erica R. Fuhrmeister, Molly E. Cantrell, Ana K. Pitol, Jenna M. Swarthout, Julie E. Powers +4 more

Correction to Predictors of Enteric Pathogens in the Domestic Environment from Human and Animal Sources in Rural Bangladesh

Environmental Science & Technology(2020)10.1021/acs.est.0c00091

N/A

0DataRank · unranked

0 citations

Ayşe Ercümen, Amy J. Pickering, Kaitlyn M. Jeanis, Mahaa Ahmed, Sara Brown +15 more

Surveillance of potential pathogens and antibiotic resistance in wastewater and surface water from Boston, USA and Vellore, India using long-read metagenomic sequencing

medRxiv(2021)10.1101/2021.04.22.21255864

N/A

0DataRank · unranked

15 citations

Lee E. Voth‐Gaeddert, Angeline Metilda, Albert Tai, Rebecca E. Batorsky, Balaji Veeraraghavan +4 more

Human Colonization with Antibiotic-Resistant Bacteria from Nonoccupational Exposure to Domesticated Animals in Low- and Middle-Income Countries: A Critical Review

Environmental Science & Technology(2022)10.1021/acs.est.2c01494

N/A

0DataRank · unranked

34 citations

Elana M. G. Chan, Denise I. Garcia, Maya Nadimpalli, Amy J. Pickering, Jenna M. Swarthout

Drinking Water Chlorination Impact on Fecal Carriage of Extended-Spectrum Beta-Lactamase-Producing Enterobacteriaceae in Bangladeshi Children in a Double-Blind, Cluster-Randomized Controlled Trial

Environmental Health Perspectives(2022)10.1289/ehp11359

N/A

0DataRank · unranked

5 citations

Esther E. Greenwood, Lisa Teichmann, Maya Nadimpalli, Lea Caduff, Jenna M. Swarthout +8 more

Risk factors for extended-spectrum beta-lactamase (ESBL) producing E. coli carriage among children in a food animal producing region of Quito, Ecuador

medRxiv(2022)10.1101/2022.11.14.22282279

N/A

0DataRank · unranked

2 citations

Fernanda Loayza, Liseth Salinas, Diana Paredes, Daniela Garcia, Soledad Sarzosa +7 more

Evaluating the relationship between community water and sanitation access and the global burden of antibiotic resistance: an ecological study

The Lancet Microbe(2023)10.1016/s2666-5247(23)00137-4

N/A

0DataRank · unranked

76 citations

Abigail P. Harvey, Maya Nadimpalli, Karin Gallandat, Argaw Ambelu, Benjamin F. Arnold +13 more

Risk factors for extended-spectrum beta-lactamase (ESBL)-producing E. coli carriage among children in a food animal-producing region of Ecuador: A repeated measures observational study

PLoS Medicine(2023)10.1371/journal.pmed.1004299

N/A

0DataRank · unranked

18 citations

Fernanda Loayza, Liseth Salinas, Diana Paredes, Daniela Garcia, Soledad Sarzosa +7 more

Leveraging the COVID-19 pandemic as a natural experiment to assess changes in antibiotic use and antibiotic-resistant E. coli carriage in semi-rural Ecuador

Scientific Reports(2023)10.1038/s41598-023-39532-5

N/A

0DataRank · unranked

9 citations

Fernanda Loayza, Liseth Salinas, Diana Paredes, Daniela Centrón, Soledad Sarzosa +7 more

Soil surveillance for monitoring soil-transmitted helminths: Method development and field testing in three countries

PLoS neglected tropical diseases(2024)10.1371/journal.pntd.0012416

N/A

0DataRank · unranked

10 citations

Heather K. Amato, Nils Pilotte, Benard Chieng, Sylvie Araka, Joël Edoux Eric Siko +20 more