🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jake Crawford

Intellia Therapeutics (United States)

ORCID: 0000-0001-6207-0782
Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

6in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Model weights from "The Effects of Nonlinear Signal on Expression-Based Prediction Performance"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6703143
Top 100%
0DataRank
Top 100%0 citations

Jake Crawford, Casey S. Greene, Benjamin J. Heil

Papers

Driven by 19 papers — median percentile 0. Top paper: “Assessment of network module identification across complex diseases”.

Assessment of network module identification across complex diseases

Nature Methods(2019)10.1038/s41592-019-0509-5
N/A
7.6DataRank · unranked
334 citations

Sarvenaz Choobdar, Mehmet E. Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang +17 more

SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses

Genomics, Proteomics & Bioinformatics(2022)10.1016/j.gpb.2022.09.011
N/A
0.705DataRank · unranked
9 citations

Dallas L. Mould, Jake Crawford, Dongbo Hu, Rani K. Powers, Georgia Doing +4 more

The effect of non-linear signal in classification problems using gene expression

PLOS Computational Biology(2023)10.1371/journal.pcbi.1010984
N/A
0.360DataRank · unranked
10 citations

Jake Crawford, Casey S. Greene, Benjamin J. Heil

Widespread redundancy in -omics profiles of cancer mutation states

Genome Biology(2022)10.1186/s13059-022-02705-y
N/A
0.345DataRank · unranked
9 citations

Brock C. Christensen, Maria Chikina, Casey S. Greene, Jake Crawford

Widespread redundancy in -omics profiles of cancer mutation states

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.27.466140
N/A
0.241DataRank · unranked
4 citations

Brock C. Christensen, Maria Chikina, Casey S. Greene, Jake Crawford

Optimizer’s dilemma: optimization strongly influences model selection in transcriptomic prediction

Bioinformatics Advances(2024)10.1093/bioadv/vbae004
N/A
0.208DataRank · unranked
3 citations

Maria Chikina, Casey S. Greene, Jake Crawford

The Effects of Nonlinear Signal on Expression-Based Prediction Performance

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.22.497194
N/A
0.104DataRank · unranked
1 citations

Jake Crawford, Casey S. Greene, Benjamin J. Heil

Optimizer’s dilemma: optimization strongly influences model selection in transcriptomic prediction

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.26.546586
N/A
0.104DataRank · unranked
1 citations

Maria Chikina, Casey S. Greene, Jake Crawford

Generative neural networks separate common and specific transcriptional responses

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.24.445440
N/A
0.104DataRank · unranked
1 citations

Dallas L. Mould, Jake Crawford, Dongbo Hu, Rani K. Powers, Georgia Doing +4 more

Graph biased feature selection of genes is better than random for many genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.17.910703
N/A
0.104DataRank · unranked
1 citations

Casey S. Greene, Jake Crawford

Model weights from "The Effects of Nonlinear Signal on Expression-Based Prediction Performance"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6703143
Top 100%
0DataRank
Top 100%0 citations

Jake Crawford, Casey S. Greene, Benjamin J. Heil

wenda_gpu: fast domain adaptation for genomic data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.09.487671
N/A
0DataRank · unranked
0 citations

Jake Crawford, Jacob R. Gardner, Casey S. Greene, Ariel A. Hippen Anderson

wenda_gpu: fast domain adaptation for genomic data

Bioinformatics(2022)10.1093/bioinformatics/btac663
N/A
0DataRank · unranked
0 citations

Jake Crawford, Jacob R. Gardner, Casey S. Greene, Ariel A. Hippen Anderson

Additional file 2 of Widespread redundancy in -omics profiles of cancer mutation states

Open MIND(2022)10.6084/m9.figshare.20167988
Top 100%
0DataRank
Top 100%0 citations

Brock C. Christensen, Maria Chikina, Casey S. Greene, Jake Crawford

Input data from "The Effects of Nonlinear Signal on Expression-Based Prediction Performance"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6711450
Top 100%
0DataRank
Top 100%0 citations

Jake Crawford, Casey S. Greene, Benjamin J. Heil

Input data from "The Effects of Nonlinear Signal on Expression-Based Prediction Performance"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6711449
Top 100%
0DataRank
Top 100%0 citations

Jake Crawford, Casey S. Greene, Benjamin J. Heil

Results from "The Effects of Nonlinear Signal on Expression-Based Prediction Performance"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6685654
Top 100%
0DataRank
Top 100%0 citations

Jake Crawford, Casey S. Greene, Benjamin J. Heil

Incorporating biological structure into machine learning models in biomedicine

Current Opinion in Biotechnology(2020)10.1016/j.copbio.2019.12.021
N/A
0DataRank · unranked
1 citations

Casey S. Greene, Jake Crawford

Best holdout assessment is sufficient for cancer transcriptomic model selection

Patterns(2024)10.1016/j.patter.2024.101115
N/A
0DataRank · unranked
1 citations

Maria Chikina, Casey S. Greene, Jake Crawford