Andrew D. Ellington

Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.5Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

GroovDB: A Database of Ligand-Inducible Transcription Factors

ACS Synthetic Biology(2022)10.1021/acssynbio.2c00382

Top 19%

1.1DataRank

Top 19%28 citations

Joshua D. Love, Daniel J. Diaz, Andrew D. Ellington, Simon d’Oelsnitz

Papers

Driven by 47 papers — median percentile 69. Top paper: “GroovDB: A Database of Ligand-Inducible Transcription Factors”.

GroovDB: A Database of Ligand-Inducible Transcription Factors

ACS Synthetic Biology(2022)10.1021/acssynbio.2c00382

Top 19%

1.1DataRank

Top 19%28 citations

Joshua D. Love, Daniel J. Diaz, Andrew D. Ellington, Simon d’Oelsnitz

Ribosome-mediated biosynthesis of pyridazinone oligomers in vitro

Nature Communications(2022)10.1038/s41467-022-33701-2

N/A

0.483DataRank · unranked

24 citations

Jaime N. Coronado, Namjin Cho, Jongdoo Lim, Brandon Hosford, Sangwon Seo +7 more

GroovDB: A database of ligand-inducible transcription factors

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.18.500503

Top 42%

0.449DataRank

Top 42%4 citations

Andrew D. Ellington, Simon d’Oelsnitz

Global Incorporation of Unnatural Amino Acids in Escherichia coli

Protein Engineering Protocols10.1385/1-59745-187-8:23

N/A

0.406DataRank · unranked

14 citations

Andrew D. Ellington, Jamie M. Bacher

LDBT instead of DBTL: combining machine learning and rapid cell-free testing

Nature Communications(2025)10.1038/s41467-025-65281-2

N/A

0.345DataRank · unranked

9 citations

Ian T. Harrison, Mari Olsen, John T. Lazar, Michael C. Jewett, Andrew D. Ellington +1 more

Analysis of macerated ticks using Boolean logic gating colorimetric isothermal nucleic acid assays for Lyme Borrelia and Ixodes scapularis ticks

Scientific Reports(2023)10.1038/s41598-023-38452-8

N/A

0.241DataRank · unranked

4 citations

Maria D. Esteve‐Gasent, Andrew D. Ellington, Sanchita Bhadra

ΦX174 Attenuation by Whole Genome Codon Deoptimization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.10.942847

N/A

0.208DataRank · unranked

3 citations

Martina M. Ederer, Katelyn Burleigh, LuAnn Scott, Randall A. Hughes, Vlad Codrea +4 more

Moving towards sequencing-based metabolomics

Trends in Genetics(2025)10.1016/j.tig.2025.04.006

N/A

0.104DataRank · unranked

1 citations

Andrew D. Ellington, Edward M. Marcotte, Alia Clark‐ElSayed

Improved Bst DNA Polymerase Variants Derived via a Machine Learning Approach

Biochemistry(2021)10.1021/acs.biochem.1c00451

N/A

0DataRank · unranked

57 citations

Phuoc H. T. Ngo, Raghav Shroff, Daniel J. Diaz, Andre C. Maranhao, David J. F. Walker +3 more

Producing molecular biology reagents without purification

PLoS ONE(2021)10.1371/journal.pone.0252507

N/A

0DataRank · unranked

22 citations

Vylan Nguyen, Jose‐Angel Torres, Shaunak Kar, Stéphane Fadanka, Chiara Gandini +6 more

Synthetic repertoires derived from convalescent COVID-19 patients enable discovery of SARS-CoV-2 neutralizing antibodies and a novel quaternary binding modality

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.07.438849

N/A

0DataRank · unranked

15 citations

Ching‐Lin Hsieh, Andrew P. Horton, Elizabeth C. Gardner, Foteini Bartzoka, Nianshuang Wang +35 more

Multi-modal engineering of Bst DNA polymerase for thermostability in ultra-fast LAMP reactions

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.15.439918

N/A

0DataRank · unranked

7 citations

Phuoc H. T. Ngo, Raghav Shroff, Andre C. Maranhao, David J. F. Walker, Sanchita Bhadra +2 more

Using structurally fungible biosensors to evolve improved alkaloid biosyntheses

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.07.447399

N/A

0DataRank · unranked

4 citations

Wantae Kim, Nathaniel T. Burkholder, Kamyab Javanmardi, Ross Thyer, Yan Zhang +3 more

Using structurally fungible biosensors to evolve improved alkaloid biosyntheses

Research Square(2021)10.21203/rs.3.rs-600315/v1

N/A

0DataRank · unranked

3 citations

Wantae Kim, Nathaniel T. Burkholder, Kamyab Javanmardi, Ross Thyer, Yan Zhang +3 more

Producing molecular biology reagents without purification.

Apollo (University of Cambridge)(2021)10.17863/cam.72213

N/A

0DataRank · unranked

0 citations

Vylan Nguyen, Jose‐Angel Torres, Shaunak Kar, Stéphane Fadanka, Chiara Gandini +6 more

Learning the local landscape of protein structures with convolutional neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.19.456994

N/A

0DataRank · unranked

0 citations

Daniel J. Diaz, James M. Loy, Andrew D. Ellington, Claus O. Wilke, Anastasiya V. Kulikova

Using fungible biosensors to evolve improved alkaloid biosyntheses

Nature Chemical Biology(2022)10.1038/s41589-022-01072-w

N/A

0DataRank · unranked

92 citations

Wantae Kim, Nathaniel T. Burkholder, Kamyab Javanmardi, Ross Thyer, Yan Zhang +3 more

Kinetics of elementary steps in loop-mediated isothermal amplification (LAMP) show that strand invasion during initiation is rate-limiting

Nucleic Acids Research(2022)10.1093/nar/gkac1221

N/A

0DataRank · unranked

51 citations

Inyup Paik, Sanchita Bhadra, Kenneth A. Johnson, Andrew D. Ellington, Tyler L. Dangerfield

Functional expression of opioid receptors and other human GPCRs in yeast engineered to produce human sterols

Nature Communications(2022)10.1038/s41467-022-30570-7

N/A

0DataRank · unranked

25 citations

Colleen J. Mulvihill, Riddhiman K. Garge, Daniel R. Boutz, Olivier Rousseau, Brendan M. Floyd +8 more

Preparation and Use of Cellular Reagents: A Low‐resource Molecular Biology Reagent Platform

Current Protocols(2022)10.1002/cpz1.387

N/A

0DataRank · unranked

10 citations

Inyup Paik, Jose‐Angel Torres, Stéphane Fadanka, Chiara Gandini, Harry Akligoh +3 more

Portable nucleic acid tests for rapid detection of monkeypox virus

medRxiv(2022)10.1101/2022.08.09.22278605

N/A

0DataRank · unranked

9 citations

Andrew D. Ellington, Sanchita Bhadra

Humanized CB1R and CB2R yeast biosensors enable facile screening of cannabinoid compounds

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.12.511978

N/A

0DataRank · unranked

1 citations

Josh Lutgens, Jimmy Gollihar, Petra Bachanová, Edward M. Marcotte, Andrew D. Ellington +2 more

Using machine learning to predict the effects and consequences of mutations in proteins

Current Opinion in Structural Biology(2023)10.1016/j.sbi.2022.102518

N/A

0DataRank · unranked

57 citations

Anastasiya V. Kulikova, Andrew D. Ellington, Claus O. Wilke, Daniel J. Diaz

Two sequence- and two structure-based ML models have learned different aspects of protein biochemistry

Scientific Reports(2023)10.1038/s41598-023-40247-w

N/A

0DataRank · unranked

13 citations

Daniel J. Diaz, Tianlong Chen, T. Jeffrey Cole, Andrew D. Ellington, Claus O. Wilke +1 more

A facile technology for the high-throughput sequencing of the paired VH:VL and TCRβ:TCRα repertoires

Science Advances(2020)10.1126/sciadv.aay9093

N/A

0DataRank · unranked

26 citations

Jonathan R. McDaniel, Christopher Stevens, William N. Voss, Jie Li, R. Durrett +12 more

SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode

Communications Biology(2023)10.1038/s42003-023-05649-6

N/A

0DataRank · unranked

8 citations

Ching‐Lin Hsieh, Andrew P. Horton, Elizabeth C. Gardner, Ling Zhou, Foteini Bartzoka +25 more

Two sequence- and two structure-based ML models have learned different aspects of protein biochemistry

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.20.533508

N/A

0DataRank · unranked

4 citations

Daniel J. Diaz, Tianlong Chen, T. Jeffrey Cole, Andrew D. Ellington, Claus O. Wilke +1 more

Peptide Macrocyclization Guided by Reversible Covalent Templating

Chemistry - A European Journal(2023)10.1002/chem.202301949

N/A

0DataRank · unranked

0 citations

Stephanie A. Valenzuela, Aevi van der Stok, Arjun K. Menta, Yuka Shimizu, Phuoc H. T. Ngo +3 more

Biosensor and machine learning-aided engineering of an amaryllidaceae enzyme

Nature Communications(2024)10.1038/s41467-024-46356-y

N/A

0DataRank · unranked

50 citations

Daniel J. Diaz, Wantae Kim, Daniel J. Acosta, Tyler L. Dangerfield, Mason W. Schechter +8 more

Asymmetric Synthesis of α-Chloroamides via Photoenzymatic Hydroalkylation of Olefins

Journal of the American Chemical Society(2024)10.1021/jacs.4c00927

N/A

0DataRank · unranked

40 citations

Sophie G. Bender, Damien Sorigue, Daniel J. Diaz, Andrew D. Ellington, Greg Mann +3 more

Mining patents with large language models elucidates the chemical function landscape

Digital Discovery(2024)10.1039/d4dd00011k

N/A

0DataRank · unranked

12 citations

Claus O. Wilke, Edward M. Marcotte, Andrew D. Ellington, Clayton W. Kosonocky

Snowprint: a predictive tool for genetic biosensor discovery

Communications Biology(2024)10.1038/s42003-024-05849-8

N/A

0DataRank · unranked

19 citations

Sarah K. Stofel, Joshua D. Love, Andrew D. Ellington, Simon d’Oelsnitz

Selective 8-oxo-rG stalling occurs in the catalytic core of polynucleotide phosphorylase (PNPase) during degradation

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2317865121

N/A

0DataRank · unranked

9 citations

Wantae Kim, Shawn W. Schowe, Kathleen Taylor, Runhua Han, Vashita Jain +10 more

Directed evolution of an orthogonal transcription engine for programmable gene expression in eukaryotes

iScience(2024)10.1016/j.isci.2024.111541

N/A

0DataRank · unranked

4 citations

Elizabeth C. Gardner, Kamyab Javanmardi, Daniel R. Boutz, Raghav Shroff, Andrew P. Horton +4 more

Engineering a human P2X2 receptor with altered ligand selectivity in yeast

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107248

N/A

0DataRank · unranked

2 citations

Caitlin Tramont, Petra Bachanová, Chad Wang, Hannah Do, Daniel R. Boutz +5 more

Directed evolution of an orthogonal transcription engine for programmable gene expression in eukaryotes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.25.614978

N/A

0DataRank · unranked

0 citations

Elizabeth C. Gardner, Kamyab Javanmardi, Daniel R. Boutz, Raghav Shroff, Andrew P. Horton +4 more

Machine learning-guided engineering of T7 RNA polymerase and mRNA capping enzymes for enhanced gene expression in eukaryotic systems

Chemical Engineering Journal(2025)10.1016/j.cej.2025.165191

N/A

0DataRank · unranked

8 citations

Danny J. Diaz, Wantae Kim, Mason Galliver, Andrew D. Ellington, Seung‐Gyun Woo

Directed evolution of L-DOPA sensing and production enables efficient incorporation of an expanded genetic code into proteins

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.26.661824

N/A

0DataRank · unranked

0 citations

Qiyao Wei, Chad Wang, Jessica Hellinger, Vidya Pandarinath, Simon d’Oelsnitz +5 more

Directed Evolution in Escherichia coli for Novel Ligand‐Binding Regulators: Evolving a Progesterone‐Responsive Transcription Factor to Bind Cortisol

Current Protocols(2025)10.1002/cpz1.70218

N/A

0DataRank · unranked

0 citations

Kaila E. Nayvelt, Satoshi Ishida, Simon d’Oelsnitz, Andrew D. Ellington, Alia Clark‐ElSayed

Using alternative SMILES representations to identify novel functional analogues in chemical similarity vector searches

Patterns(2023)10.1016/j.patter.2023.100865

N/A

0DataRank · unranked

11 citations

Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington, Clayton W. Kosonocky

Site-specific 5-hydroxytryptophan incorporation into apolipoprotein A-I impairs cholesterol efflux activity and high-density lipoprotein biogenesis

Journal of Biological Chemistry(2020)10.1074/jbc.ra119.012092

N/A

0DataRank · unranked

18 citations

Valentin Gogonea, Anthony J. DiDonato, Jennifer A. Buffa, Ibrahim Choucair, Bruce S. Levison +7 more

ΦX174 Attenuation by Whole-Genome Codon Deoptimization

Genome Biology and Evolution(2020)10.1093/gbe/evaa214

N/A

0DataRank · unranked

15 citations

Martina M. Ederer, Katelyn Burleigh, LuAnn Scott, Randall A. Hughes, Vlad Codrea +4 more

How a B family DNA polymerase has been evolved to copy RNA

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2009415117

N/A

0DataRank · unranked

13 citations

Peng He, Arti Pothukuchy, Jimmy Gollihar, Andrew D. Ellington, Wei Yang +1 more

One enzyme reverse transcription qPCR using Taq DNA polymerase

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.27.120238

N/A

0DataRank · unranked

9 citations

Andre C. Maranhao, Andrew D. Ellington, Sanchita Bhadra

Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation

medRxiv(2020)10.1101/2020.08.01.20166173

N/A

0DataRank · unranked

3 citations

Sanchita Bhadra, Joon H. Choi, Dalton M. Towers, Christopher S. Sullivan, Andrew D. Ellington +1 more

Alternative Computational Protocols for Supercharging Protein Surfaces for Reversible Unfolding and Retention of Stability

UNC Libraries(2020)10.17615/d0j8-zf32

N/A

0DataRank · unranked

0 citations

George Georgiou, Ron Jacak, Jeffrey J. Gray, Brian Kuhlman, Sergey Lyskov +4 more

High-Surety Isothermal Amplification and Detection of SARS-CoV-2

mSphere(2021)10.1128/msphere.00911-20

N/A

0DataRank · unranked

81 citations

Timothy E. Riedel, Simren Lakhotia, Nicholas D. Tran, Andrew D. Ellington, Sanchita Bhadra

Andrew D. Ellington

Indexed papers

Top data-sharing exemplar

Papers