Shubo Tian

Also affiliated with United States National Library of Medicine, National Institute of Nursing Research, Office of Extramural Research

Biochemistry, Genetics and Molecular BiologyComputer ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.8Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge

Nucleic Acids Research(2024)10.1093/nar/gkae235

Top 6%

3.8DataRank

Top 6%167 citations

Alexis Allot, Po‐Ting Lai, Robert Leaman, Shubo Tian, Ling Luo +5 more

Papers

Driven by 26 papers — median percentile 68. Top paper: “PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge”.

PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge

Nucleic Acids Research(2024)10.1093/nar/gkae235

Top 6%

3.8DataRank

Top 6%167 citations

Alexis Allot, Po‐Ting Lai, Robert Leaman, Shubo Tian, Ling Luo +5 more

Large language models in biomedicine and health: current research landscape and future directions

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae202

N/A

2.0DataRank · unranked

79 citations

Yifan Peng, Trevor Cohen, Marzyeh Ghassemi, Chunhua Weng, Shubo Tian +1 more

A comprehensive large-scale biomedical knowledge graph for AI-powered data-driven biomedical research

Nature Machine Intelligence(2025)10.1038/s42256-025-01014-w

Top 22%

0.899DataRank

Top 22%30 citations

Xin Sui, Feng Pan, Kaixian Yu, Keqiao Li, Shubo Tian +15 more

Archive of PubTator 3.0 source code and trained models

PubMed(2024)10.48550/arxiv.2401.11048

Top 32%

0.613DataRank

Top 32%3 citations

Alexis Allot, Po‐Ting Lai, Robert Leaman, Shubo Tian, Ling Luo +5 more

LitSense 2.0: AI-powered biomedical information retrieval with sentence and passage level knowledge discovery

Nucleic Acids Research(2025)10.1093/nar/gkaf417

Top 54%

0.312DataRank

Top 54%7 citations

Won Bae Kim, Shubo Tian, Donald C. Comeau, W. John Wilbur, ZHIYONG LU +1 more

Enhancing biomedical relation extraction with directionality

Bioinformatics(2025)10.1093/bioinformatics/btaf226

N/A

0.309DataRank · unranked

5 citations

Chih-Hsuan Wei, Shubo Tian, Robert Leaman, ZHIYONG LU, Po‐Ting Lai

PubMed Computed Authors in 2024: an open resource of disambiguated author names in biomedical literature

Bioinformatics(2024)10.1093/bioinformatics/btae672

Top 63%

0.221DataRank

Top 63%3 citations

Qingyu Chen, Donald C. Comeau, W. John Wilbur, ZHIYONG LU, Shubo Tian

Prediction of Outcomes After Heart Transplantation in Pediatric Patients Using National Registry Data: Evaluation of Machine Learning Approaches

JMIR Cardio(2023)10.2196/45352

N/A

0DataRank · unranked

14 citations

Shubo Tian, Aiwen Xing, Dana Hughes, Dipankar Gupta, Xiaoyu Wang +2 more

A comprehensive large scale biomedical knowledge graph for AI powered data driven biomedical research

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.13.562216

N/A

0DataRank · unranked

11 citations

Xin Sui, Feng Pan, Kaixian Yu, Keqiao Li, Shubo Tian +15 more

Parsing Clinical Trial Eligibility Criteria for Cohort Query by a Multi-Input Multi-Output Sequence Labeling Model

PubMed(2023)10.1109/bibm58861.2023.10385876

N/A

0DataRank · unranked

2 citations

Pengfei Yin, Hansi Zhang, Arslan Erdengasileng, Jiang Bian, Zhe He +1 more

Quality of Answers of Generative Large Language Models Versus Peer Users for Interpreting Laboratory Test Results for Lay Patients: Evaluation Study

Journal of Medical Internet Research(2024)10.2196/56655

N/A

0DataRank · unranked

50 citations

Balu Bhasuran, Qiao Jin, Shubo Tian, Karim Hanna, Cindy Shavor +4 more

Information retrieval and classification of real-time multi-source hurricane evacuation notices

International Journal of Disaster Risk Reduction(2024)10.1016/j.ijdrr.2024.104759

N/A

0DataRank · unranked

1 citations

Shubo Tian, J. R. Daly, Melissa Geiger, Minna Jia, Jinfeng Zhang +1 more

Response to Letter to Editor ‘Timely need for navigating the potential and downsides of LLMs in healthcare and biomedicine’

Briefings in Bioinformatics(2024)10.1093/bib/bbae211

N/A

0DataRank · unranked

1 citations

Qiao Jin, ZHIYONG LU, Shubo Tian

GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases

PubMed(2024)10.48550/arxiv.2405.16205

N/A

0DataRank · unranked

2 citations

Qiao Jin, Chih-Hsuan Wei, Shubo Tian, Po‐Ting Lai, Qingqing Zhu +4 more

Entry-level guide to the use of large language models for medical research

PubMed(2024)10.48550/arxiv.2410.18856

N/A

0DataRank · unranked

2 citations

Nicholas Wan, Robert Leaman, Shubo Tian, Zhizheng Wang, Yifan Yang +18 more

Information Retrieval and Classification of Real-Time Multi-Source Hurricane Evacuation Notices

arXiv (Cornell University)(2024)10.48550/arxiv.2401.06789

N/A

0DataRank · unranked

0 citations

Shubo Tian, J. R. Daly, Melissa Geiger, Minna Jia, Jinfeng Zhang +1 more

GeneAgent: self-verification language agent for gene-set analysis using domain databases

Nature Methods(2025)10.1038/s41592-025-02748-6

N/A

0DataRank · unranked

41 citations

Qiao Jin, Chih-Hsuan Wei, Shubo Tian, Po‐Ting Lai, Qingqing Zhu +5 more

Enhancing Biomedical Relation Extraction with Directionality

arXiv (Cornell University)(2025)10.48550/arxiv.2501.14079

N/A

0DataRank · unranked

0 citations

Chih-Hsuan Wei, Shubo Tian, Robert Leaman, ZHIYONG LU, Po‐Ting Lai

A BERT-Based Hybrid System for Chemical Identification and Indexing in Full-Text Articles

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.27.466183

N/A

0DataRank · unranked

4 citations

Keqiao Li, Qing Han, Shubo Tian, Jian Wang, Ting Hu +2 more

FAIR-SMART expands access to supplementary materials for research transparency

PLoS Biology(2025)10.1371/journal.pbio.3003428

N/A

0DataRank · unranked

0 citations

Robert Leaman, Po-Ting Lai, D. C. Comeau, Shubo Tian, ZHIYONG LU +1 more

Parsing Clinical Trial Eligibility Criteria for Cohort Query by a Multi-Input Multi-Output Sequence Labeling Model

medRxiv(2021)10.1101/2021.11.18.21266533

N/A

0DataRank · unranked

2 citations

Pengfei Yin, Hansi Zhang, Arslan Erdengasileng, Jiang Bian, Zhe He +1 more

Developing a More Accurate Biomedical Literature Retrieval Method using Deep Learning and Citations in PubMed Central Full-text Articles

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.21.465340

N/A

0DataRank · unranked

1 citations

Shubo Tian, Yuchuan Tao, Jie Hao, Jinfeng Zhang, Chun‐Chao Lo

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations

Database(2022)10.1093/database/baac069

N/A

0DataRank · unranked

41 citations

Alexis Allot, Robert Leaman, Rezarta Islamaj, Jingcheng Du, Fang Li +34 more

Predicting health outcomes through machine learning in pediatric heart transplantation: Use of national data from the United Network for Organ Sharing

Research Square(2022)10.21203/rs.3.rs-1582987/v1

N/A

0DataRank · unranked

1 citations

Shubo Tian, Aiwen Xing, Dana Hughes, Dipankar Gupta, Zhe He +1 more

Towards Formal Computable Representation of Clinical Trial Eligibility Criteria for Alzheimer's Disease

medRxiv(2022)10.1101/2022.03.21.22272707

N/A

0DataRank · unranked

0 citations

Hansi Zhang, Xing He, Matthew Diller, Qian Li, Shubo Tian +5 more

Opportunities and challenges for ChatGPT and large language models in biomedicine and health

Briefings in Bioinformatics(2023)10.1093/bib/bbad493

N/A

0DataRank · unranked

354 citations

Qiao Jin, Lana Yeganova, Po‐Ting Lai, Qingqing Zhu, Xiuying Chen +9 more

Shubo Tian

Indexed papers

Top data-sharing exemplar

Papers