🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Deepak Koirala

University of Maryland, Baltimore County

ORCID: 0000-0001-6424-3173

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 13 papers. Top paper: “Dynamic bulge nucleotides in the KSHV PAN ENE triple helix provide a unique binding platform for small molecule ligands”.

Dynamic bulge nucleotides in the KSHV PAN ENE triple helix provide a unique binding platform for small molecule ligands

Nucleic Acids Research(2021)10.1093/nar/gkab1170

N/A

0.442DataRank · unranked

18 citations

Abeer A. Ageeli, Wojciech K. Kasprzak, Mi Li, Jennifer T. Miller, Joanna Sztuba-Solińska +10 more

Mutation-driven RRE stem-loop II conformational change induces HIV-1 nuclear export dysfunction

Nucleic Acids Research(2025)10.1093/nar/gkaf583

N/A

0.104DataRank · unranked

1 citations

Lucia Hudson, Amanda Photenhauer, Trinity Zang, Lauren Lerew, Şölen Ekesan +9 more

Crystal structure of a highly conserved enteroviral 5′ cloverleaf RNA replication element

Nature Communications(2023)10.1038/s41467-023-37658-8

N/A

0DataRank · unranked

24 citations

Nele M. Hollmann, Jeff Vogt, Spiridon E. Sevdalis, Hasan Al Banna, Manju Ojha +2 more

RNA-Puzzles Round V: blind predictions of 23 RNA structures

Nature Methods(2024)10.1038/s41592-024-02543-9

N/A

0DataRank · unranked

65 citations

Yagoub Adam, Ryszard W. Adamiak, Maciej Antczak, Belisa R. H. de Aquino, Nagendar Goud Badepally +94 more

Structure of saguaro cactus virus 3′ translational enhancer mimics 5′ cap for eIF4E binding

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2313677121

N/A

0DataRank · unranked

17 citations

Jeff Vogt, Naba Krishna Das, Emily Redmond, Karndeep Singh, Hasan Al Banna +3 more

Synthetic anti-RNA antibody derivatives for RNA visualization in mammalian cells

Nucleic Acids Research(2024)10.1093/nar/gkae1275

N/A

0DataRank · unranked

2 citations

Kimberley Berg, Tasnia Sadat, Naba Krishna Das, Roshan Paudel, Victoria D′Souza +2 more

Functional Relevance of CASP16 Nucleic Acid Predictions as Evaluated by Structure Providers

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70043

N/A

0DataRank · unranked

12 citations

Reinhard Albrecht, Ebbe Sloth Andersen, Hsuan‐Ai Chen, Wah Chiu, Rhiju Das +28 more

Structural basis for 3C and 3CD recruitment by enteroviral genomes during negative-strand RNA synthesis

Nature Communications(2025)10.1038/s41467-025-64376-0

N/A

0DataRank · unranked

1 citations

Alisha Patel, Reem Abdelghani, Deepak Koirala, Naba Krishna Das

Roles of RNA Structures in the Genome Translation of (+) Sense RNA Viruses

Viruses(2025)10.3390/v17111404

N/A

0DataRank · unranked

1 citations

Bethel G. Beyene, Joshua Miguele Camacho, Deepak Koirala, Guangming Lu

Functional relevance of CASP16 nucleic acid predictions as evaluated by structure providers

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.15.649049

N/A

0DataRank · unranked

10 citations

Reinhard Albrecht, Ebbe Sloth Andersen, Hsuan‐Ai Chen, Wah Chiu, Rhiju Das +28 more

The SARS-CoV-2 Programmed −1 Ribosomal Frameshifting Element Crystal Structure Solved to 2.09 Å Using Chaperone-Assisted RNA Crystallography

ACS Chemical Biology(2021)10.1021/acschembio.1c00324

N/A

0DataRank · unranked

83 citations

Anna Lewicka, Deepak Koirala, Nan‐Sheng Li, Joseph A. Piccirilli, Christina Roman

Template-based RNA structure prediction advanced through a blind code competition

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.30.696949

N/A

0DataRank · unranked

2 citations

Shujun He, Toshiyuki Oda, G Gangadhareswar Rao, Yehyun Kim, Raehyun Kim +54 more

Structural Basis for Fluorescence Activation by Pepper RNA

ACS Chemical Biology(2022)10.1021/acschembio.2c00290

N/A

0DataRank · unranked

23 citations

Wojciech Gogacz, Nan‐Sheng Li, Deepak Koirala, Joseph A. Piccirilli, Huw C. Rees