R. Dustin Schaeffer

Also affiliated with Southwestern Medical Center, The University of Texas Southwestern Medical Center

Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.3Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011586

Top 26%

0.763DataRank

Top 26%24 citations

Jing Zhang, Kirill E. Medvedev, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

Papers

Driven by 24 papers — median percentile 22. Top paper: “ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2”.

ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011586

Top 26%

0.763DataRank

Top 26%24 citations

Jing Zhang, Kirill E. Medvedev, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

A Fifth of the Protein World: Rossmann-like Proteins as an Evolutionarily Successful Structural unit

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.166788

N/A

0.681DataRank · unranked

93 citations

Lisa N. Kinch, R. Dustin Schaeffer, Jimin Pei, Nick V. Grishin, Kirill E. Medvedev

Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands

Scientific Reports(2024)10.1038/s41598-024-60991-x

Top 42%

0.455DataRank

Top 42%12 citations

Jing Zhang, R. Dustin Schaeffer, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

Bridging the Gap between Sequence and Structure Classifications of Proteins with AlphaFold Models

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168764

N/A

0.406DataRank · unranked

14 citations

Antonina Andreeva, Sara Chuguransky, Beatriz Lázaro Pinto, Typhaine Paysan‐Lafosse, R. Dustin Schaeffer +4 more

Insights into virulence: structure classification of the Vibrio parahaemolyticus RIMD mobilome

mSystems(2023)10.1128/msystems.00796-23

N/A

0.312DataRank · unranked

7 citations

R. Dustin Schaeffer, Jing Zhang, Qian Cong, Kim Orth, Nick V. Grishin +1 more

Case Studies of Orphan Domain Reclassification in ECOD by Expert Curation

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.26840

Top 78%

0.104DataRank

Top 78%1 citations

R. Dustin Schaeffer, Qian Cong, Nick V. Grishin, Jimin Pei

Pathogenic mutation hotspots in protein kinase domain structure

Protein Science(2023)10.1002/pro.4750

N/A

0DataRank · unranked

15 citations

R. Dustin Schaeffer, Jimin Pei, Nick V. Grishin, Kirill E. Medvedev

Pan-cancer structurome reveals overrepresentation of beta sandwiches and underrepresentation of alpha helical domains

Scientific Reports(2023)10.1038/s41598-023-39273-5

N/A

0DataRank · unranked

7 citations

R. Dustin Schaeffer, Kenneth S. Chen, Nick V. Grishin, Kirill E. Medvedev

DPAM-AI: a domain parser for AlphaFold models powered by artificial intelligence

Bioinformatics(2024)10.1093/bioinformatics/btae740

N/A

0DataRank · unranked

2 citations

Jing Zhang, R. Dustin Schaeffer, Qian Cong, Jesse Durham

Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.30.577995

N/A

0DataRank · unranked

0 citations

Jing Zhang, R. Dustin Schaeffer, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

DrugDomain: the evolutionary context of drugs and small molecules bound to domains

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.20.585940

N/A

0DataRank · unranked

0 citations

R. Dustin Schaeffer, Nick V. Grishin, Kirill E. Medvedev

Leveraging AI to explore structural contexts of post-translational modifications in drug binding

Journal of Cheminformatics(2025)10.1186/s13321-025-01019-y

N/A

0DataRank · unranked

17 citations

R. Dustin Schaeffer, Nick V. Grishin, Kirill E. Medvedev

Assessment of Protein Complex Predictions in CASP16 : Are We Making Progress?

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70068

N/A

0DataRank · unranked

8 citations

Rongqing Yuan, Andriy Kryshtafovych, Jimin Pei, Rachael C. Kretsch, R. Dustin Schaeffer +5 more

Leveraging AI to Explore Structural Contexts of Post-Translational Modifications in Drug Binding

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.14.633078

N/A

0DataRank · unranked

2 citations

R. Dustin Schaeffer, Nick V. Grishin, Kirill E. Medvedev

Refinement and curation of homologous groups facilitated by structure prediction

Protein Science(2025)10.1002/pro.70074

N/A

0DataRank · unranked

0 citations

Jimin Pei, Jing Zhang, Qian Cong, Nick V. Grishin, R. Dustin Schaeffer

DrugDomain 2.0: comprehensive database of protein domains-ligands/drugs interactions across the whole Protein Data Bank

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.03.663025

Top 100%

0DataRank

Top 100%0 citations

R. Dustin Schaeffer, Nick V. Grishin, Kirill E. Medvedev

DrugDomain 2.0: Comprehensive database of protein domains-ligands/drugs interactions across the whole Protein Data Bank

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.09.018

Top 100%

0DataRank

Top 100%0 citations

R. Dustin Schaeffer, Nick V. Grishin, Kirill E. Medvedev

Exploring the Terra incognita of AI ‐based domain classifications

Protein Science(2025)10.1002/pro.70392

N/A

0DataRank · unranked

0 citations

Antonina Andreeva, Tiago Grego, Sara Chuguransky, Beatriz Lázaro, Noemí Flores +6 more

Using evolutionary context to classify difficult protein folds

PLoS Computational Biology(2025)10.1371/journal.pcbi.1013773

N/A

0DataRank · unranked

0 citations

R. Dustin Schaeffer, Qian Cong, Nick V. Grishin, Jimin Pei

Recent advances suggest increased influence of selective pressure in allostery

Current Opinion in Structural Biology(2020)10.1016/j.sbi.2020.02.004

N/A

0DataRank · unranked

18 citations

R. Dustin Schaeffer, Lisa N. Kinch, Kirill E. Medvedev, Nick V. Grishin, Archana Bhat

Accurate prediction of protein structures and interactions using a three-track neural network

Science(2021)10.1126/science.abj8754

N/A

0DataRank · unranked

5780 citations

Frank DiMaio, Ivan Anishchenko, Justas Dauparas, Sergey Ovchinnikov, Gyu Rie Lee +27 more

Assessment of domain interactions in the fourteenth round of the Critical Assessment of Structure Prediction (CASP14)

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26225

N/A

0DataRank · unranked

13 citations

Lisa N. Kinch, Andriy Kryshtafovych, Nick V. Grishin, R. Dustin Schaeffer

DPAM: A Domain Parser for AlphaFold Models

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.22.509116

N/A

0DataRank · unranked

6 citations

R. Dustin Schaeffer, Jesse Durham, Qian Cong, Nick V. Grishin, Jing Zhang

Classification of domains in predicted structures of the human proteome

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2214069120

N/A

0DataRank · unranked

44 citations

Jing Zhang, Lisa N. Kinch, Jimin Pei, Qian Cong, Nick V. Grishin +1 more

R. Dustin Schaeffer

Indexed papers

Top data-sharing exemplar

Papers