Joana C. Silva

Also affiliated with Universidad Complutense de Madrid, University of London, University of Maryland, Baltimore, University of Lisbon, Instituto de Medicina Tropical, Link Consulting, IS practice, Universidade Nova de Lisboa

MedicineImmunology and MicrobiologyBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 38 papers. Top paper: “Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential”.

Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential

Genome Medicine(2020)10.1186/s13073-019-0708-9

N/A

0.673DataRank · unranked

88 citations

Elliott F. Drábek, Ankit Dwivedi, Emily M. Stucke, Jonathan Crabtree, Antoine Dara +29 more

A genotyping assay to determine geographic origin and transmission potential of Plasmodium falciparum malaria cases

Communications Biology(2021)10.1038/s42003-021-02667-0

N/A

0.598DataRank · unranked

17 citations

Nadia Raytselis, Roxanne Withers, Ankit Dwivedi, Peter D. Crompton, Boubacar Traoré +4 more

The exception that proves the rule: Virulence gene expression at the onset of Plasmodium falciparum blood stage infections

PLoS Pathogens(2023)10.1371/journal.ppat.1011468

N/A

0.424DataRank · unranked

11 citations

Ralf Krumkamp, Jana Held, Heidrun von Thien, Irene Wittmann, Yannick D. Höppner +19 more

Epitope-based sieve analysis of Plasmodium falciparum sequences from a FMP2.1/AS02A vaccine trial is consistent with differential vaccine efficacy against immunologically relevant AMA1 variants

Vaccine(2020)10.1016/j.vaccine.2020.06.035

N/A

0.373DataRank · unranked

11 citations

Amadou Niangaly, Matthew Adams, Drissa Coulibaly, Abdoulaye K. Koné, Karim Traoré +12 more

Can incorporating genotyping data into efficacy estimators improve efficiency of early phase malaria vaccine trials?

Malaria Journal(2023)10.1186/s12936-023-04802-0

N/A

0.104DataRank · unranked

1 citations

Viviane Callier, Biraj Shrestha, Sudhaunshu Joshi, Ankit Dwivedi, Joana C. Silva +4 more

Plasmodium falciparum gene expression signatures and antibody profiling implicate the fikk, phist, and surf multigene families in severe malaria syndromes

Journal of Infection(2025)10.1016/j.jinf.2025.106655

N/A

0.104DataRank · unranked

1 citations

Emily M. Stucke, Drissa Coulibaly, Jonathan G. Lawton, Rafal S. Sobota, Abdoulaye K. Koné +36 more

Whole-genome analysis of Malawian Plasmodium falciparum isolates identifies potential targets of allele-specific immunity to clinical malaria

medRxiv(2020)10.1101/2020.09.16.20196253

N/A

0.104DataRank · unranked

1 citations

Myo Naung, Kara A. Moser, Matthew Adams, Andrea G. Buchwald, Ankit Dwivedi +9 more

Genome, proteome, and immunome data explain why 6 month controlled human malaria infection with sporozoites of the Pf7G8 clone of Plasmodium falciparum is a rigorous predictor of the efficacy of the PfNF54-based PfSPZ Vaccine in Africa

medRxiv(2021)10.1101/2021.12.09.21266528

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0DataRank · unranked

0 citations

Ankit Dwivedi, Kara A. Moser, Mahamadou S. Sissoko, Judith E. Epstein, Sara A. Healy +9 more

Malaria in Angola: recent progress, challenges and future opportunities using parasite demography studies

Malaria Journal(2022)10.1186/s12936-022-04424-y

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0DataRank · unranked

25 citations

Joana Morais, José Franco Martins, Ryan J. Scalsky, Thomas C. Stabler, Márcia Melo Medeiros +4 more

A genetically modified Plasmodium berghei parasite as a surrogate for whole-sporozoite vaccination against P. vivax malaria

npj Vaccines(2022)10.1038/s41541-022-00585-8

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0DataRank · unranked

12 citations

Teresa G. Maia, Miguel Duarte, Carolina M. Andrade, Inês S. Albuquerque, Ankit Dwivedi +6 more

An In Silico Analysis of Malaria Pre-Erythrocytic-Stage Antigens Interpreting Worldwide Genetic Data to Suggest Vaccine Candidate Variants and Epitopes

Microorganisms(2022)10.3390/microorganisms10061090

N/A

0DataRank · unranked

10 citations

Ankit Dwivedi, Matthew Adams, Amadou Niangaly, Matthew B. Laurens, Myaing M. Nyunt +5 more

Plasmodium falciparum 7G8 challenge provides conservative prediction of efficacy of PfNF54-based PfSPZ Vaccine in Africa

Nature Communications(2022)10.1038/s41467-022-30882-8

N/A

0DataRank · unranked

12 citations

Ankit Dwivedi, Kara A. Moser, Mahamadou S. Sissoko, Judith E. Epstein, Sara A. Healy +9 more

STRIDE: a command-line HMM-based identifier and sub-classifier of Plasmodium falciparum RIFIN and STEVOR variant surface antigen families

BMC Bioinformatics(2022)10.1186/s12859-021-04515-8

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0DataRank · unranked

2 citations

Zalak Shah, Katie R. Bradwell, James B. Munro, Andrea A. Berry, David Serre +5 more

Gene Coverage Count and Classification (GC3): a locus sequence coverage assessment tool using short-read whole genome sequencing data, and its application to identify and classify histidine-rich protein 2 and 3 deletions in Plasmodium falciparum

Malaria Journal(2022)10.1186/s12936-022-04376-3

N/A

0DataRank · unranked

2 citations

Ankit Dwivedi, Biraj Shrestha, Sudhaunshu Joshi, Tobias Schindler, Amed Ouattara +4 more

Gene Coverage Count and Classification (GC3): a locus sequence coverage assessment tool using short-read whole genome sequencing data, and its application to identify and classify histidine-rich protein 2 and 3 deletions in Plasmodium falciparum

Research Square(2022)10.21203/rs.3.rs-1862557/v1

N/A

0DataRank · unranked

0 citations

Ankit Dwivedi, Biraj Shrestha, Sudhaunshu Joshi, Tobias Schindler, Amed Ouattara +4 more

The exception that proves the rule: Virulence gene expression at the onset of Plasmodium falciparum blood stage infections

medRxiv(2022)10.1101/2022.12.05.22283093

N/A

0DataRank · unranked

0 citations

Ralf Krumkamp, Jana Held, Heidrun von Thien, Irene Wittmann, Yannick D. Höppner +18 more

Sporozoite immunization: innovative translational science to support the fight against malaria

Expert Review of Vaccines(2023)10.1080/14760584.2023.2245890

N/A

0DataRank · unranked

47 citations

L. W. Preston Church, Tooba Murshedkar, Peter F. Billingsley, Eric R. James, Mei‐Chun Chen +41 more

Immunogenomic profile at baseline predicts host susceptibility to clinical malaria

Frontiers in Immunology(2023)10.3389/fimmu.2023.1179314

N/A

0DataRank · unranked

4 citations

Ankit Dwivedi, Olukemi O. Ifeonu, James B. Munro, Biraj Shrestha, Robin E. Bromley +18 more

Role of Pfs47 in the dispersal of ancestral Plasmodium falciparum malaria through adaptation to different anopheline vectors

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2213626120

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0DataRank · unranked

10 citations

Gaspar E. Cánepa, Ankit Dwivedi, Weimin Liu, Nadia Raytselis, Christophe Antonio‐Nkondjio +4 more

Plasmodium falciparum merozoite surface protein 1 as asexual blood stage malaria vaccine candidate

Expert Review of Vaccines(2023)10.1080/14760584.2023.2295430

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0DataRank · unranked

10 citations

Thomas C. Stabler, Kristin Fürle, Joana C. Silva, Claudia Daubenberger, Richard Thomson-Luque

Strong Positive Selection Biases Identity-By-Descent-Based Inferences of Recent Demography and Population Structure in Plasmodium falciparum

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.14.549114

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0DataRank · unranked

2 citations

Víctor Borda, Roland Laboulaye, Michele Spring, Mariusz Wojnarski, Brian A. Vesely +5 more

Can incorporating genotyping data into efficacy estimators improve efficiency of early phase malaria vaccine trials?

Research Square(2023)10.21203/rs.3.rs-3370731/v1

N/A

0DataRank · unranked

0 citations

Viviane Callier, Biraj Shrestha, Sudhaunshu Joshi, Ankit Dwivedi, Joana C. Silva +4 more

Strong positive selection biases identity-by-descent-based inferences of recent demography and population structure in Plasmodium falciparum

Nature Communications(2024)10.1038/s41467-024-46659-0

N/A

0DataRank · unranked

35 citations

Víctor Borda, Roland Laboulaye, Michele Spring, Mariusz Wojnarski, Brian A. Vesely +5 more

A shared inflammatory signature across severe malaria syndromes manifested by transcriptomic, proteomic and metabolomic analyses

Nature Communications(2025)10.1038/s41467-025-59281-5

N/A

0DataRank · unranked

7 citations

Emily M. Stucke, Drissa Coulibaly, Jonathan G. Lawton, Bryan E. Cummings, Savy Sebastian +28 more

The Source-Sink Dynamics of Plasmodium vivax May Undermine Malaria Elimination Efforts in the Amazon: An Epidemiological and Population Genomic Study

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf457

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0DataRank · unranked

3 citations

Rodrigo M. Corder, Igor Cavallini Johansen, Winni Alves Ladeia, Priscila T. Rodrigues, Simone Ladeia-Andrade +3 more

Whole-genome sieve analysis: Identification of protective malaria antigens by leveraging allele-specific vaccine efficacy

Vaccine(2025)10.1016/j.vaccine.2025.126783

N/A

0DataRank · unranked

5 citations

Ankit Dwivedi, Thomas C. Stabler, Gillian Mbambo, Amed Ouattara, Kirsten E. Lyke +3 more

Regular Plasmodium falciparum importation onto Bioko Island, Equatorial Guinea, hampers malaria elimination from the island

PLOS Global Public Health(2025)10.1371/journal.pgph.0004999

N/A

0DataRank · unranked

1 citations

Ankit Dwivedi, Bing Guo, Biraj Shrestha, Sudhaunshu Joshi, Matilde Riloha Rivas +6 more

Diamonds in the rif: Alignment-free comparative genomics analysis reveals strain-transcendent Plasmodium falciparum antigens amidst extensive genetic diversity

Infection Genetics and Evolution(2025)10.1016/j.meegid.2025.105725

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0DataRank · unranked

3 citations

Albert E Zhou, Emily M. Stucke, Shannon Takala‐Harrison, Joana C. Silva, Mark A. Travassos +1 more

Protective targets of PfSPZ vaccines identified from whole-genome sieve analysis of isolates from malaria vaccine efficacy trials in West Africa

medRxiv(2025)10.1101/2025.03.04.25323352

N/A

0DataRank · unranked

1 citations

Ryan J. Scalsky, David G. Harris, Thomas C. Stabler, Biraj Shrestha, Sudhaunshu Joshi +18 more

Plasmodium simium : birth and evolution of a zoonotic malaria parasite species

Parasitology(2025)10.1017/s0031182025100310

N/A

0DataRank · unranked

0 citations

Winni A. Ladeia, Ryan J. Scalsky, Ankit Dwivedi, Thomas C. Stabler, Priscila T. Rodrigues +4 more

Worldwide genetic diversity of Plasmodium vivax Pv47 is consistent with natural selection by anopheline mosquitoes

Nature Communications(2025)10.1038/s41467-025-62680-3

N/A

0DataRank · unranked

0 citations

Lilia González-Cerón, Ankit Dwivedi, Tran Zen B. Torres, Nadia Raytselis, Micah Young +11 more

Controlled human malaria infection with NF54 and 7G8 strains elicit differential antibody responses to Plasmodium falciparum peptides

Frontiers in Immunology(2025)10.3389/fimmu.2025.1641280

N/A

0DataRank · unranked

0 citations

Travis L. Jensen, Kirsten E. Lyke, Matthew B. Laurens, Joana C. Silva, Emily M. Stucke +15 more

Optimization of parasite DNA enrichment approaches to generate whole genome sequencing data for Plasmodium falciparum from low parasitaemia samples

Malaria Journal(2020)10.1186/s12936-020-03195-8

N/A

0DataRank · unranked

22 citations

Matthew Adams, Kara A. Moser, Biraj Shrestha, Emily M. Stucke, Miriam K. Laufer +4 more

Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms

BMC Genomics(2020)10.1186/s12864-020-6683-0

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0DataRank · unranked

25 citations

Roger Pellé, Joshua Orvis, Hanzel T. Gotia, Olukemi O. Ifeonu, Priti Kumari +8 more

Optimization of parasite DNA enrichment approaches to generate whole genome sequencing data for Plasmodium falciparum from low-parasitemia samples

Research Square(2020)10.21203/rs.2.17581/v2

N/A

0DataRank · unranked

0 citations

Matthew Adams, Kara A. Moser, Biraj Shrestha, Emily M. Stucke, Miriam K. Laufer +4 more

Evaluation of a high-throughput, cost-effective Illumina library preparation kit

Scientific Reports(2021)10.1038/s41598-021-94911-0

N/A

0DataRank · unranked

22 citations

Jane M. Michalski, Shaoji Cheng, Rayanna S. Patkus, Luke J. Tallon, Lisa Sadzewicz +5 more

Integration of population and functional genomics to understand mechanisms of artemisinin resistance in Plasmodium falciparum

International Journal for Parasitology Drugs and Drug Resistance(2021)10.1016/j.ijpddr.2021.05.006

N/A

0DataRank · unranked

21 citations

Linda Ines Zoungrana, Carl D. Bannerman, Samira Jahangiri, Ankit Dwivedi, Joana C. Silva +3 more

Whole-genome analysis of Malawian Plasmodium falciparum isolates identifies possible targets of allele-specific immunity to clinical malaria

PLoS Genetics(2021)10.1371/journal.pgen.1009576

N/A

0DataRank · unranked

17 citations

Myo Naung, Kara A. Moser, Matthew Adams, Andrea G. Buchwald, Ankit Dwivedi +9 more