🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Hongyu Li

Shanghai Jiao Tong University

ORCID: 0000-0001-6525-9310

Also affiliated with Shanghai Advanced Research Institute

Biochemistry, Genetics and Molecular BiologyNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 16 papers. Top paper: “Molecular epidemiology and characteristic of virulence gene of community-acquired and hospital-acquired methicillin-resistant Staphylococcus aureus isolates in Sun Yat-sen Memorial hospital, Guangzhou, Southern China”.

Molecular epidemiology and characteristic of virulence gene of community-acquired and hospital-acquired methicillin-resistant Staphylococcus aureus isolates in Sun Yat-sen Memorial hospital, Guangzhou, Southern China

BMC Infectious Diseases(2016)10.1186/s12879-016-1684-y

N/A

0.612DataRank · unranked

58 citations

Yunwen Bao, Nengyong Ouyang, Xinlu Dai, Kunyi Pan, Baiji Chen +6 more

Synaptic hyperexcitability of cytomegalic pyramidal neurons contributes to epileptogenesis in tuberous sclerosis complex

Cell Reports(2022)10.1016/j.celrep.2022.111085

N/A

0.529DataRank · unranked

33 citations

Alexander A. Sosunov, Wudu Lado, Jia Jie Teoh, Ahrom Ham, Hongyu Li +10 more

Association Between Triglyceride‐Glucose Index and Risk of Gallstone Disease: A Prospective Cohort Study of 395 391 Individuals

Journal of Gastroenterology and Hepatology(2025)10.1111/jgh.16828

N/A

0.416DataRank · unranked

15 citations

Guoheng Jiang, Wenqian Yu, Jing Luo, Shiyi Li, Linjun Xie +7 more

A Markov random field model-based approach for differentially expressed gene detection from single-cell RNA-seq data

Briefings in Bioinformatics(2022)10.1093/bib/bbac166

N/A

0.323DataRank · unranked

6 citations

Hongyu Li, Le Zhang, Sreeganga S. Chandra, Luca Pinello, Biqing Zhu

A Markov Random Field Model for Network-based Differential Expression Analysis of Single-cell RNA-seq Data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.11.378976

N/A

0.168DataRank · unranked

2 citations

Biqing Zhu, Zhichao Xu, Taylor Adams, Naftali Kaminski, Luca Pinello +1 more

DeepITQA: Deep Based Image Text Quality Assessment

Lecture Notes in Computer Science(2018)10.1007/978-3-030-04224-0_34

N/A

0.104DataRank · unranked

1 citations

Fan Zhu, Junhua Qiu, Hongyu Li

Mapping DNA Methylation Signatures to Identify Epigenetic Variation Across Subcortical Regions of the Human Posttraumatic Stress Disorder Brain

Biological Psychiatry(2025)10.1016/j.biopsych.2025.10.032

N/A

0.104DataRank · unranked

1 citations

Yujing Liu, Yiming Shi, Jiawei Wang, Tuan Nguyen, Yuhan Xie +30 more

Statistical methods for assessing the effects of de novo variants on birth defects

Human Genomics(2024)10.1186/s40246-024-00590-z

N/A

0DataRank · unranked

2 citations

Ruoxuan Wu, Hongyu Li, Weilai Dong, Geyu Zhou, Luca Pinello +1 more

A hierarchical Bayesian interaction model to estimate cell-type-specific methylation quantitative trait loci incorporating priors from cell-sorted bisulfite sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.01.578272

N/A

0DataRank · unranked

0 citations

Biao Cai, Hongyu Li, Xinyu Zhang, Gypsyamber DʼSouza, Sadeep Shrestha +10 more

A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

Genome Medicine(2025)10.1186/s13073-025-01473-1

N/A

0DataRank · unranked

5 citations

Yujing Liu, Hongyu Li, Tuan P. Nguyen, John Lee Soto-Vargas, Rashaun S. Wilson +41 more

A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data

BMC Bioinformatics(2021)10.1186/s12859-021-04412-0

N/A

0DataRank · unranked

13 citations

Biqing Zhu, Zhichao Xu, Taylor Adams, Naftali Kaminski, Luca Pinello +1 more

Incorporating additive genetic effects and linkage disequilibrium information to discover gene-environment interactions using BV-LDER-GE

Genome biology(2025)10.1186/s13059-025-03815-z

N/A

0DataRank · unranked

1 citations

Wei Jiang, Jiangnan Shen, Hongyu Li, Yuhan Xie, Andrew T. DeWan +2 more

Incorporating local ancestry information to predict genetically associated DNA methylation in admixed populations

Briefings in Bioinformatics(2025)10.1093/bib/bbaf325

N/A

0DataRank · unranked

0 citations

Geyu Zhou, Hongyu Li, Xinyu Zhang, Amy C. Justice, Claudia Martinez +4 more

Network assisted analysis of de novo variants using protein-protein interaction information identified 46 candidate genes for congenital heart disease

PLoS Genetics(2022)10.1371/journal.pgen.1010252

N/A

0DataRank · unranked

8 citations

Wei Jiang, Weilai Dong, Hongyu Li, Sheng Chih Jin, Martina Brueckner +2 more

Network Assisted Analysis of De Novo Variants Using Protein-Protein Interaction Information Identified 46 Candidate Genes for Congenital Heart Disease

medRxiv(2021)10.1101/2021.11.30.21267069

N/A

0DataRank · unranked

0 citations

Wei Jiang, Weilai Dong, Hongyu Li, Sheng Chih Jin, Martina Brueckner +2 more

Statistical Inference of Cell-Type Proportions Estimated from Bulk Expression Data

Journal of the American Statistical Association(2024)10.1080/01621459.2024.2382435

N/A

0DataRank · unranked

3 citations

Jingfei Zhang, Hongyu Li, Chang Su, Hongyu Zhao, Biao Cai