Hong Xie

Also affiliated with University of Washington, Harbin Institute of Technology, New Cross Hospital, University of Washington Medical Center, Southern University of Science and Technology, University of Washington Applied Physics Laboratory, Shenzhen Second People's Hospital, Sichuan Center for Disease Control and Prevention, Anhui Polytechnic University

Medicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 28 papers. Top paper: “SARS-CoV-2 ORF6 Disrupts Bidirectional Nucleocytoplasmic Transport through Interactions with Rae1 and Nup98”.

SARS-CoV-2 ORF6 Disrupts Bidirectional Nucleocytoplasmic Transport through Interactions with Rae1 and Nup98

mBio(2021)10.1128/mbio.00065-21

N/A

0.755DataRank · unranked

152 citations

Nicole A. P. Lieberman, Quynh Phung, Tien-Ying Hsiang, Hong Xie, Pavitra Roychoudhury +7 more

The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters—King County, Washington

The Journal of Infectious Diseases(2022)10.1093/infdis/jiac239

N/A

0.603DataRank · unranked

14 citations

Amanda M. Casto, Pavitra Roychoudhury, Peter D. Han, Hong Xie, Brian Pfau +17 more

Repeated mRNA vaccination sequentially boosts SARS-CoV-2-specific CD8+ T cells in persons with previous COVID-19

Nature Immunology(2023)10.1038/s41590-023-01692-x

N/A

0.529DataRank · unranked

33 citations

Koshlan Mayer-Blackwell, Lichen Jing, Kerry J. Laing, Anton M. Sholukh, Russell St. Germain +23 more

Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county

PLoS Pathogens(2024)10.1371/journal.ppat.1012117

N/A

0.441DataRank · unranked

10 citations

Amanda C. Perofsky, Lauren Frisbie, Louise H. Moncla, Pavitra Roychoudhury, Hong Xie +26 more

A high-throughput, polymerase-targeted RT-PCR for broad detection of mammalian filoviruses

Microbiology Spectrum(2024)10.1128/spectrum.01010-24

N/A

0.374DataRank · unranked

6 citations

Yaël Perez, Adam J. Hume, B. Ethan Nunley, Kevin Kong, Margaret G. Mills +3 more

Phylogenetic estimates of SARS-CoV-2 introductions into Washington State

medRxiv(2021)10.1101/2021.04.05.21254924

N/A

0.345DataRank · unranked

9 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lasata Shrestha, Hong Xie, Keith R. Jerome +5 more

Host–pathogen dynamics in longitudinal clinical specimens from patients with COVID-19

Scientific Reports(2022)10.1038/s41598-022-09752-2

N/A

0.292DataRank · unranked

6 citations

Victoria M. Rachleff, Hong Xie, Lasata Shrestha, Nicole A. P. Lieberman, Vikas Peddu +9 more

Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.09.479546

N/A

0.241DataRank · unranked

4 citations

Pavitra Roychoudhury, Hong Xie, Lasata Shrestha, Amin Addetia, Keith R. Jerome +3 more

Clinical performance characteristics of the Swift Normalase Amplicon Panel for sensitive recovery of SARS-CoV-2 genomes

medRxiv(2021)10.1101/2021.10.22.21265255

N/A

0DataRank · unranked

1 citations

Michelle J. Lin, Hong Xie, Margaret G. Mills, Shah A. Mohamed Bakhash, Vinod P. Gaur +9 more

Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study

Clinical Infectious Diseases(2022)10.1093/cid/ciac279

N/A

0DataRank · unranked

80 citations

Stephanie M. Lunn, Michael Famulare, Lauren Frisbie, Ian Painter, Roy Burstein +40 more

Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat

Virus Evolution(2022)10.1093/ve/veac052

N/A

0DataRank · unranked

21 citations

Pavitra Roychoudhury, Hong Xie, Lasata Shrestha, Amin Addetia, Keith R. Jerome +3 more

Clinical Performance Characteristics of the Swift Normalase Amplicon Panel for Sensitive Recovery of Severe Acute Respiratory Syndrome Coronavirus 2 Genomes

Journal of Molecular Diagnostics(2022)10.1016/j.jmoldx.2022.05.007

N/A

0DataRank · unranked

18 citations

Michelle J. Lin, Hong Xie, Margaret G. Mills, Shah A. Mohamed Bakhash, Vinod P. Gaur +9 more

Fragment Size-Based Enrichment of Viral Sequences in Plasma Cell-Free DNA

Journal of Molecular Diagnostics(2022)10.1016/j.jmoldx.2022.01.007

N/A

0DataRank · unranked

12 citations

Michelle J. Lin, Hong Xie, Alexander L. Greninger, Quynh Phung

Herpes simplex virus lymphadenitis is associated with tumor reduction in a patient with chronic lymphocytic leukemia

Journal of Clinical Investigation(2022)10.1172/jci161109

N/A

0DataRank · unranked

6 citations

Anton M. Sholukh, Andreas Wieland, David L. Jaye, Mary Carrington, Meei‐Li Huang +11 more

Genomic Epidemiology of Treponema pallidum and Circulation of Strains With Diminished tprK Antigen Variation Capability in Seattle, 2021–2022

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad368

N/A

0DataRank · unranked

14 citations

Carlos Avendaño, Shah A.K. Mohamed Bakhash, Ethan Nunley, Hong Xie, Lorenzo Giacani +6 more

Liver-Humanized NSG-PiZ Mice Support the Study of Chronic Hepatitis B Virus Infection and Antiviral Therapies

Microbiology Spectrum(2023)10.1128/spectrum.05176-22

N/A

0DataRank · unranked

7 citations

Daniel Stone, Michelle A. Loprieno, Lindsay M. Klouser, Pavitra Roychoudhury, Tracy K. Santo +8 more

A multiplexed barcode approach to simultaneously evaluate gene delivery by adeno-associated virus capsid variants in nonhuman primates

Hepatology Communications(2023)10.1097/hc9.0000000000000009

N/A

0DataRank · unranked

2 citations

Nadja Meumann, Anne-Sophie Kuhlmann, Christopher W. Peterson, Hong Xie, Pavitra Roychoudhury +16 more

Clinical and Genomic Epidemiology of Coxsackievirus A21 and Enterovirus D68 in Homeless Shelters, King County, Washington, USA, 2019–2021

Emerging infectious diseases(2024)10.3201/eid3011.240687

N/A

0DataRank · unranked

1 citations

Amanda M. Casto, Nicholas Franko, Eric J. Chow, Peter D. Han, Luis Fernando Gamboa +18 more

Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences

Nature(2025)10.1038/s41586-025-08637-4

N/A

0DataRank · unranked

12 citations

Miguel I. Paredes, Amanda C. Perofsky, Lauren Frisbie, Hong Xie, Kevin Kong +21 more

Cryptic transmission of SARS-CoV-2 in Washington state

Science(2020)10.1126/science.abc0523

N/A

0DataRank · unranked

329 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lea M. Starita, Michael Famulare, Meei‐Li Huang +62 more

Disrupted intrathalamic and thalamocortical structural covariance networks in posttraumatic stress disorder

Network Neuroscience(2025)10.1162/netn.a.535

N/A

0DataRank · unranked

0 citations

Ahmed Hussain, Delin Sun, C. Lexi Baird, Courtney Russell, Neda Jahanshad +79 more

In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age

PLoS Biology(2020)10.1371/journal.pbio.3000849

N/A

0DataRank · unranked

303 citations

Vikas Peddu, Hong Xie, Lasata Shrestha, Meei‐Li Huang, Megan C. Mears +10 more

Prevalent and Diverse Intratumoral Oncoprotein-Specific CD8+ T Cells within Polyomavirus-Driven Merkel Cell Carcinomas

Cancer Immunology Research(2020)10.1158/2326-6066.cir-19-0647

N/A

0DataRank · unranked

37 citations

Mariliis Ott, Candice D. Church, Rima M. Kulikauskas, Dafina Ibrani, Jayasri G. Iyer +11 more

Comparative genomics and full-length Tprk profiling of Treponema pallidum subsp. pallidum reinfection

PLoS neglected tropical diseases(2020)10.1371/journal.pntd.0007921

N/A

0DataRank · unranked

29 citations

Lauren C. Tantalo, Michelle J. Lin, Hong Xie, Meei‐Li Huang, Christina M. Marra +2 more

Cryptic transmission of SARS-CoV-2 in Washington State

medRxiv(2020)10.1101/2020.04.02.20051417

N/A

0DataRank · unranked

86 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lea M. Starita, Michael Famulare, Meei‐Li Huang +52 more

In vivo antiviral host response to SARS-CoV-2 by viral load, sex, and age

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.22.165225

N/A

0DataRank · unranked

48 citations

Vikas Peddu, Hong Xie, Lasata Shrestha, Meei‐Li Huang, Megan C. Mears +10 more

Treponema pallidum genome sequencing from six continents reveals variability in vaccine candidate genes and dominance of Nichols clade strains in Madagascar

PLoS neglected tropical diseases(2021)10.1371/journal.pntd.0010063

N/A

0DataRank · unranked

89 citations

Michelle J. Lin, Hong Xie, Lasata Shrestha, Tien V. Nguyen, Meei‐Li Huang +28 more

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

Science Translational Medicine(2021)10.1126/scitranslmed.abf0202

N/A

0DataRank · unranked

80 citations

Cassia Wagner, Chris Frazar, Pavitra Roychoudhury, Jover Lee, Louise H. Moncla +38 more