🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Aleix Puig-Barbe

European Bioinformatics Institute

ORCID: 0000-0001-6677-8489
Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 7%percentile
0.165Author DataRank

Indexed papers

11in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 11 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Cell type populations for 3D anatomical structures of the Human Reference Atlas

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.14.670406
Top 70%
0.165DataRank
Top 70%2 citations

Bruce W. Herr, Lu Chen, Daniel Bolin, Danial Qaurooni, Michael Ginda +6 more

Papers

Driven by 17 papers — median percentile 0. Top paper: “Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)”.

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

Journal of Biomedical Semantics(2024)10.1186/s13326-024-00320-3
N/A
0.584DataRank · unranked
48 citations

Anna V. Anagnostopoulos, Susan M. Bello, Kai Blumberg, Rhiannon Cameron, Leigh C Carmody +25 more

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

arXiv (Cornell University)(2023)10.48550/arxiv.2312.10904
N/A
0.312DataRank · unranked
7 citations

Anna V. Anagnostopoulos, S. Bello, Kai Blumberg, Rhiannon Cameron, Leigh C Carmody +25 more

A general strategy for generating expert-guided, simplified views of ontologies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.13.628309
N/A
0.269DataRank · unranked
5 citations

Aleix Puig-Barbe, Ellen M. Quardokus, James P. Balhoff, Jasmine Belfiore, Nana-Jane Chipampe +10 more

Cell type populations for 3D anatomical structures of the Human Reference Atlas

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.14.670406
Top 70%
0.165DataRank
Top 70%2 citations

Bruce W. Herr, Lu Chen, Daniel Bolin, Danial Qaurooni, Michael Ginda +6 more

cell type annotations for Azimuth, v1.3

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm294.fplh.558
Top 100%
0DataRank
Top 100%0 citations

Aleix Puig-Barbe, Nicole A. Vasilevsky, Ellen M. Quardokus

cell type annotations for Vasculature Common Coordinate Framework (VCCF), v1.1

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm492.zsqs.495
Top 100%
0DataRank
Top 100%0 citations

Aleix Puig-Barbe

cell type annotations for FRMatch, v1.0

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm782.cgjx.762
Top 100%
0DataRank
Top 100%0 citations

Aleix Puig-Barbe

cell type annotations for SpaTial cELl LeARning (STELLAR), v1.0

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm554.jqld.949
Top 100%
0DataRank
Top 100%0 citations

Aleix Puig-Barbe

cell type annotations for Pan-human Azimuth, v1.1

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm727.tlkl.237
Top 100%
0DataRank
Top 100%0 citations

Aleix Puig-Barbe

cell type annotations for Robust Image-Based Cell Annotator (RIBCA), v1.0

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm545.hcbl.598
Top 100%
0DataRank
Top 100%0 citations

Aleix Puig-Barbe

cell type annotations for deepcelltypes-HuBMAP, v1.1

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm927.rndp.426
Top 100%
0DataRank
Top 100%0 citations

Nicole A. Vasilevsky, Aleix Puig-Barbe

cell type annotations for CellTypist, v1.2

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm358.ctvq.639
Top 100%
0DataRank
Top 100%0 citations

Aleix Puig-Barbe, Ellen M. Quardokus

Actin remodeling mediates ROS production and JNK activation to drive apoptosis-induced proliferation

PLoS Genetics(2022)10.1371/journal.pgen.1010533
N/A
0DataRank · unranked
27 citations

Aleix Puig-Barbe, Md. Iqramul Haque, Alla Amcheslavsky, Mengyuan Yu, Andreas Bergmann +2 more

cell type annotations for popular Vote (popV), v1.3

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm773.mxqx.874
Top 100%
0DataRank
Top 100%0 citations

Aleix Puig-Barbe, Ellen M. Quardokus

Defining breast epithelial cell types in the single-cell era

Developmental Cell(2025)10.1016/j.devcel.2025.06.032
N/A
0DataRank · unranked
11 citations

Eric G. Carlson, Tatyana Lev, Bailey Marshall, Austin D. Reed, Alex P. Sanchez‐Covarrubias +27 more

Exploring endothelial cell environments across organs in spatially resolved omics data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.23.678129
N/A
0DataRank · unranked
3 citations

Jodie Jepson, Roy Chen, Elizabeth Maier, Bruce W. Herr, Aleix Puig-Barbe +24 more

cell type annotations for deepcelltypes, v1.1

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm525.cbgx.696
Top 100%
0DataRank
Top 100%0 citations

Nicole A. Vasilevsky, Aleix Puig-Barbe