🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Julia M. Shifman

Hebrew University of Jerusalem

ORCID: 0000-0001-6678-6497

Also affiliated with Institute of Life Sciences

Biochemistry, Genetics and Molecular BiologyMedicineMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 13 papers. Top paper: “Designed Loop Extension Followed by Combinatorial Screening Confers High Specificity to a Broad Matrix MetalloproteinaseInhibitor”.

Designed Loop Extension Followed by Combinatorial Screening Confers High Specificity to a Broad Matrix MetalloproteinaseInhibitor

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.168095
N/A
0.425DataRank · unranked
16 citations

Bernhard L. Wenig, Alexandra Hockla, Evette S. Radisky, Julia M. Shifman, Alessandro Bonadio

ProBASS—a language model with sequence and structural features for predicting the effect of mutations on binding affinity

Bioinformatics(2025)10.1093/bioinformatics/btaf270
N/A
0.373DataRank · unranked
11 citations

Yibing Wu, William F. DeGrado, Julia M. Shifman, Sagara N.S. Gurusinghe

Improving Circulation Half-Life of Therapeutic Candidate N-TIMP2 by Unfolded Peptide Extension

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.27.600979
N/A
0.134DataRank · unranked
1 citations

Alexandra Hockla, Justyna Trynda, Matt Coban, Naama Rotenberg, Laura M. Strik +6 more

Targeting Ras with protein engineering

Oncotarget(2023)10.18632/oncotarget.28469
N/A
0DataRank · unranked
14 citations

Julia M. Shifman, Atílio Tomazini

Computational design of Matrix Metalloproteinase-9 (MMP-9) resistant to auto-cleavage

Biochemical Journal(2023)10.1042/bcj20230139
N/A
0DataRank · unranked
9 citations

Solomon Oguche, T. Lavy, Oded Kleifeld, Julia M. Shifman, Alessandro Bonadio

Computational design of Matrix Metalloprotenaise-9 (MMP-9) resistant to auto-cleavage

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.11.536383
N/A
0DataRank · unranked
0 citations

Solomon Oguche, T. Lavy, Oded Kleifeld, Julia M. Shifman, Alessandro Bonadio

Mirror‐Image Random Nonstandard Peptides Integrated Discovery (MI‐RaPID) Technology Yields Highly Stable and Selective Macrocyclic Peptide Inhibitors for Matrix Metallopeptidase 7

Angewandte Chemie International Edition(2024)10.1002/anie.202414256
N/A
0DataRank · unranked
18 citations

Choi Yi Li, Anjana Shenoy, Naama Rotenberg, Julia M. Shifman, Takayuki Katoh +4 more

Improving Circulation Half-Life of Therapeutic Candidate N-TIMP2 by Unfolded Peptide Extension

Biomolecules(2024)10.3390/biom14091187
N/A
0DataRank · unranked
5 citations

Alexandra Hockla, Justyna Trynda, Matt Coban, Naama Rotenberg, Laura M. Strik +6 more

Mirror‐Image Random Nonstandard Peptides Integrated Discovery (MI‐RaPID) Technology Yields Highly Stable and Selective Macrocyclic Peptide Inhibitors for Matrix Metallopeptidase 7

Angewandte Chemie(2024)10.1002/ange.202414256
N/A
0DataRank · unranked
0 citations

Choi Yi Li, Anjana Shenoy, Naama Rotenberg, Julia M. Shifman, Takayuki Katoh +4 more

Climbing up and down binding landscapes: a high-throughput study of mutational effects in homologous protein-protein complexes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.14.338756
N/A
0DataRank · unranked
2 citations

Jason Shirian, Itay Cohen, Yoav Peleg, Evette S. Radisky, Niv Papo +2 more

Engineered N-TIMP2 Variant Specifically Targeting MMP-9 Exhibits Potent Anti-Glioblastoma Activity

Biomolecules(2025)10.3390/biom15101470
N/A
0DataRank · unranked
0 citations

Naama Rotenberg, Julia M. Shifman, Mark Feldman

Computational design and experimental optimization of protein binders with prospects for biomedical applications

Protein Engineering Design and Selection(2021)10.1093/protein/gzab020
N/A
0DataRank · unranked
13 citations

Julia M. Shifman, Alessandro Bonadio

A broad matrix metalloproteinase inhibitor with designed loop extension exhibits ultrahigh specificity for MMP-14

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.29.522231
N/A
0DataRank · unranked
0 citations

Bernhard L. Wenig, Alexandra Hockla, Evette S. Radisky, Julia M. Shifman, Alessandro Bonadio