S. F. Schaffner

Also affiliated with Harvard University, Augusta University, Augusta University Health

Physics and AstronomyMedicineMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

21.4Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Papers

Driven by 33 papers — median percentile 91. Top paper: “A global reference for human genetic variation”.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Nature Communications(2014)10.1038/ncomms4934

Top 2%

8.3DataRank

Top 2%460 citations

Jonathan Marchini, Peter Donnelly, Gerton Lunter, Jonathan L. Marchini, Simon Myers +364 more

Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework

Med(2022)10.1016/j.medj.2022.09.003

Top 15%

1.4DataRank

Top 15%32 citations

Jillian S. Paull, Christopher H. Tomkins-Tinch, Bryn C. Loftness, Katherine C. DeRuff, Parvathy Nair +59 more

Malaria surveillance reveals parasite relatedness, signatures of selection, and correlates of transmission across Senegal

Nature Communications(2023)10.1038/s41467-023-43087-4

Top 16%

1.2DataRank

Top 16%51 citations

Aïda Sadikh Badiane, Akanksha Khorgade, Médoune Ndiop, Jules Gomis, Wesley Wong +29 more

Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time

Nature Communications(2020)10.1038/s41467-020-17994-9

N/A

0.780DataRank · unranked

180 citations

Anna E. Lachenauer, Adam D. Nitido, Sameed M. Siddiqui, Robin Gross, Brett Beitzel +34 more

Combining genomics and epidemiology to track mumps virus transmission in the United States

PLoS Biology(2020)10.1371/journal.pbio.3000611

N/A

0.626DataRank · unranked

64 citations

Hayden C. Metsky, S. F. Schaffner, Anne Piantadosi, Meagan Burns, Joseph A. Lewnard +25 more

Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing

Nature Communications(2024)10.1038/s41467-024-44800-7

N/A

0.558DataRank · unranked

14 citations

Aita Sène, Winnie Mkandawire, Awa B. Dème, Tolla Ndiaye, Mouhamad Sy +19 more

The 2022 RSV surge was driven by multiple viral lineages

medRxiv(2023)10.1101/2023.01.04.23284195

N/A

0.330DataRank · unranked

8 citations

Gage K. Moreno, Brittany A. Petros, Rockib Uddin, Zoe Levine, Ben Kotzen +17 more

Genetic evidence for imported malaria and local transmission in Richard Toll, Senegal

Research Square(2020)10.21203/rs.2.24566/v2

N/A

0DataRank · unranked

0 citations

Oumar Sarr, Richard W. Steketee, S. F. Schaffner, Yakou Dieye, Gnagna Dieng +20 more

Genetic evidence for imported malaria and local transmission in Richard Toll, Senegal

Research Square(2020)10.21203/rs.2.24566/v1

N/A

0DataRank · unranked

0 citations

S. F. Schaffner, Yakou Dieye, Gnagna Dieng, Michael Hainsworth, Fatou Fall +20 more

Genetic evidence for imported malaria and local transmission in Richard Toll, Senegal

Research Square(2020)10.21203/rs.2.24566/v3

N/A

0DataRank · unranked

0 citations

Oumar Sarr, Richard W. Steketee, S. F. Schaffner, Yakou Dieye, Gnagna Dieng +20 more

Repeated mutation of a developmental enhancer contributed to human thermoregulatory evolution

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2021722118

N/A

0DataRank · unranked

60 citations

Yuji Atsuta, Blerina Kokalari, S. F. Schaffner, Rexxi D. Prasasya, Adam Aharoni +4 more

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: a guide and case study in setting up an emergency-use, laboratory-developed molecular microbiological assay

Journal of Clinical Pathology(2021)10.1136/jclinpath-2020-207128

N/A

0DataRank · unranked

16 citations

Bennett Shaw, Damien Slater, Elizabeth H. Byrne, Yolanda Botti-Lodovico, Gordon Adams +28 more

Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts

medRxiv(2021)10.1101/2021.10.20.21265137

N/A

0DataRank · unranked

9 citations

Lydia A. Krasilnikova, Gage K. Moreno, S. F. Schaffner, Johanna Vostok, Nicholas FitzGerald +75 more

RH: a genetic metric for measuring intrahostPlasmodium falciparumrelatedness and distinguishing cotransmission from superinfection

PNAS Nexus(2022)10.1093/pnasnexus/pgac187

N/A

0DataRank · unranked

30 citations

Sarah K. Volkman, Rachel F. Daniels, S. F. Schaffner, Mouhamad Sy, Yaye Dié Ndiaye +9 more

Plasmodium falciparum genomic surveillance reveals spatial and temporal trends, association of genetic and physical distance, and household clustering

Scientific Reports(2022)10.1038/s41598-021-04572-2

N/A

0DataRank · unranked

34 citations

Awa B. Dème, Joshua L. Warren, Angela M. Early, S. F. Schaffner, Rachel F. Daniels +10 more

Three linked opposing regulatory variants under selection associate with IVD

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.22.521605

N/A

0DataRank · unranked

0 citations

Susan Kales, Michael J. Boyle, Joseph J. Vitti, Dylan Kotliar, S. F. Schaffner +3 more

Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria

Nature Communications(2023)10.1038/s41467-023-40247-4

N/A

0DataRank · unranked

28 citations

Brittany A. Petros, Paul E. Oluniyi, Samar Mehta, Philomena Eromon, Parvathy Nair +34 more

Malaria surveillance reveals parasite relatedness, signatures of selection, and correlates of transmission across Senegal

medRxiv(2023)10.1101/2023.04.11.23288401

N/A

0DataRank · unranked

6 citations

Aïda Sadikh Badiane, Akanksha Khorgade, Médoune Ndiop, Jules Gomis, Wesley Wong +28 more

Baseline malaria infection status and RTS,S/AS01E malaria vaccine efficacy

medRxiv(2023)10.1101/2023.11.22.23298907

N/A

0DataRank · unranked

0 citations

Angela M. Early, Li Li, S. F. Schaffner, Marc Lievens, Akanksha Khorgade +27 more

Two decades of molecular surveillance in Senegal reveal rapid changes in known drug resistance mutations over time

Malaria Journal(2024)10.1186/s12936-024-05024-8

N/A

0DataRank · unranked

14 citations

Wesley Wong, Julie Thwing, S. F. Schaffner, Katelyn M. Vendrely, Abdoulaye Tine +38 more

Evaluating the performance of Plasmodium falciparum genetic metrics for inferring National Malaria Control Programme reported incidence in Senegal

Malaria Journal(2024)10.1186/s12936-024-04897-z

N/A

0DataRank · unranked

13 citations

S. F. Schaffner, Julie Thwing, Mame Cheikh Seck, Jules Gomis, Younouss Diédhiou +24 more

Genome-wide association study identifies human genetic variants associated with fatal outcome from Lassa fever

Nature Microbiology(2024)10.1038/s41564-023-01589-3

N/A

0DataRank · unranked

10 citations

Siddharth S. Raju, Shervin Tabrizi, Ikponmwosa Odia, Augustine Goba, Mambu Momoh +60 more

MalKinID: A classification model for identifying malaria parasite genealogical relationships using identity-by-descent

Genetics(2024)10.1093/genetics/iyae197

N/A

0DataRank · unranked

5 citations

Lea Wang, S. F. Schaffner, Xue Li, Ian H. Cheeseman, Timothy J. C. Anderson +6 more

Polyphonia: detecting inter-sample contamination in viral genomic sequencing data

Bioinformatics(2024)10.1093/bioinformatics/btae698

N/A

0DataRank · unranked

1 citations

Christopher H. Tomkins-Tinch, Alton C. Gayton, S. F. Schaffner, Sabrina T. Dobbins, Adrianne Gladden-Young +4 more

hmmibd-rs: An enhanced hmmIBD implementation for parallelizable identity-by-descent detection from large-scale Plasmodium genomic data

Research Square(2025)10.21203/rs.3.rs-7004070/v1

N/A

0DataRank · unranked

0 citations

S. F. Schaffner, Aimee R. Taylor, Timothy D. O’Connor, Shannon Takala‐Harrison, Bing Guo

Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria

Scientific Reports(2020)10.1038/s41598-020-59880-w

N/A

0DataRank · unranked

52 citations

Judith U. Oguzie, Paul E. Oluniyi, Philomena Eromon, Jessica N. Uwanibe, Samar Mehta +16 more

Reporter Assays for Ebola Virus Nucleoprotein Oligomerization, Virion-Like Particle Budding, and Minigenome Activity Reveal the Importance of Nucleoprotein Amino Acid Position 111

Viruses(2020)10.3390/v12010105

N/A

0DataRank · unranked

13 citations

William E. Diehl, Yíngyún Caì, Courtney L. Finch, Chidiebere Akusobi, Robert N. Kirchdoerfer +9 more

Genetic evidence for imported malaria and local transmission in Richard Toll, Senegal

Malaria Journal(2020)10.1186/s12936-020-03346-x

N/A

0DataRank · unranked

26 citations

S. F. Schaffner, Yakou Dieye, Gnagna Dieng, Michael Hainsworth, Fatou Fall +20 more

Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.04.187757

N/A

0DataRank · unranked

89 citations

Xue Wang, Kristen E. Pascal, Christopher H. Tomkins-Tinch, Thomas Nyalile, Yetao Wang +17 more

Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.26.116442

N/A

0DataRank · unranked

14 citations

Anna E. Lachenauer, Adam D. Nitido, Sameed M. Siddiqui, Robin Gross, Brett Beitzel +34 more

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: A guide and case study in setting up an emergency-use, laboratory-developed molecular assay

medRxiv(2020)10.1101/2020.08.26.20157297

N/A

0DataRank · unranked

8 citations

Bennett Shaw, Damien Slater, Elizabeth H. Byrne, Yolanda Botti-Lodovico, Gordon Adams +28 more

Plasmodium falciparum population genetic complexity influences transcriptional profile and immune recognition of highly related genotypic clusters

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.03.894220

N/A

0DataRank · unranked

4 citations

Daniel B. Larremore, Kazutoyo Miura, Ababacar Diouf, Nicholas Baro, Rachel F. Daniels +15 more

S. F. Schaffner

Indexed papers

Top data-sharing exemplar

Papers