Penghao Xu

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 12 papers. Top paper: “RNA-mediated double-strand break repair by end-joining mechanisms”.

RNA-mediated double-strand break repair by end-joining mechanisms

Nature Communications(2024)10.1038/s41467-024-51457-9

N/A

0.561DataRank · unranked

19 citations

Yilin Lu, Margherita Maria Ferrari, Tejasvi Channagiri, Penghao Xu, Chance Meers +8 more

Light-strand bias and enriched zones of embedded ribonucleotides are associated with DNA replication and transcription in the human-mitochondrial genome

Nucleic Acids Research(2023)10.1093/nar/gkad1204

N/A

0.316DataRank · unranked

6 citations

Taehwan Yang, Deepali L. Kundnani, Mo Sun, Stefania Marsili, Alli L. Gombolay +15 more

Human ribomes reveal DNA-embedded ribonucleotides as a new type of epigenetic mark

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.27.661996

N/A

0.104DataRank · unranked

1 citations

Taehwan Yang, Tejasvi Channagiri, Penghao Xu, Y Lee, Mo Sun +20 more

Disproportionate presence of adenosine in mitochondrial and chloroplast DNA of Chlamydomonas reinhardtii

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.27.270314

N/A

0DataRank · unranked

1 citations

Alli L. Gombolay, Penghao Xu, Taehwan Yang, Youngkyu Jeon, Sathya Balachander +8 more

Frequency and patterns of ribonucleotide incorporation around autonomously replicating sequences in yeast reveal the division of labor of replicative DNA polymerases

Nucleic Acids Research(2021)10.1093/nar/gkab801

N/A

0DataRank · unranked

12 citations

Francesca Storici, Penghao Xu

RibosePreferenceAnalysis: Analyzing the preference of rNMPs embedded in genomic DNA

Software Impacts(2021)10.1016/j.simpa.2021.100149

N/A

0DataRank · unranked

6 citations

Francesca Storici, Penghao Xu

Disproportionate presence of adenosine in mitochondrial and chloroplast DNA of Chlamydomonas reinhardtii

iScience(2020)10.1016/j.isci.2020.102005

N/A

0DataRank · unranked

11 citations

Alli L. Gombolay, Penghao Xu, Taehwan Yang, Youngkyu Jeon, Sathya Balachander +10 more

DSBplot: Indels in DNA Double-strand Break Repair Experiments

PubMed(2023)10.48550/arxiv.2312.17590

N/A

0DataRank · unranked

0 citations

Margherita Maria Ferrari, Youngkyu Jeon, Penghao Xu, Francesca Storici, Nataša Jonoska +1 more

rNMPID: a database for riboNucleoside MonoPhosphates in DNA

Bioinformatics Advances(2024)10.1093/bioadv/vbae063

N/A

0DataRank · unranked

0 citations

Mo Sun, Zihan Ran, Taehwan Yang, Deepali L. Kundnani, Francesca Storici +2 more

RESCOT: Restriction enzyme set and combination optimization tools for rNMP capture techniques

Theoretical Computer Science(2021)10.1016/j.tcs.2021.08.006

N/A

0DataRank · unranked

4 citations

Francesca Storici, Penghao Xu

Ribonucleotide incorporation in yeast genomic DNA shows preference for cytosine and guanosine preceded by deoxyadenosine

Nature Communications(2020)10.1038/s41467-020-16152-5

N/A

0DataRank · unranked

32 citations

Alli L. Gombolay, Taehwan Yang, Penghao Xu, Gary P. Newnam, Havva Keskin +10 more

Ribonucleotide incorporation characteristics around yeast autonomously replicating sequences reveal the labor division of replicative DNA polymerases

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.27.270728

N/A

0DataRank · unranked

2 citations

Francesca Storici, Penghao Xu