Zhongli Xu

Also affiliated with Children's Hospital of Pittsburgh, Tsinghua University

MedicineBiochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 19 papers. Top paper: “Expression Quantitative Trait Methylation Analysis Reveals Methylomic Associations With Gene Expression in Childhood Asthma”.

Expression Quantitative Trait Methylation Analysis Reveals Methylomic Associations With Gene Expression in Childhood Asthma

CHEST Journal(2020)10.1016/j.chest.2020.05.601

N/A

0.553DataRank · unranked

39 citations

Erick Forno, Rong Zhang, Hyun Jung Park, Zhongli Xu, Qi Yan +6 more

Spatial microniches of IL-2 combine with IL-10 to drive lung migratory TH2 cells in response to inhaled allergen

Nature Immunology(2024)10.1038/s41590-024-01986-8

N/A

0.550DataRank · unranked

38 citations

Hanxi Xiao, William A. MacDonald, Isha Mehta, Akash Kishore, Augusta Vincent +8 more

A unified model-based framework for doublet or multiplet detection in single-cell multiomics data

Nature Communications(2024)10.1038/s41467-024-49448-x

N/A

0.406DataRank · unranked

14 citations

Xinjun Wang, S. H. Feng, Zhongli Xu, Jing Liu, Elisa Heidrich-O’Hare +11 more

Discovery of the first-in-class DOT1L PROTAC degrader

European Journal of Medicinal Chemistry(2025)10.1016/j.ejmech.2025.117595

N/A

0.345DataRank · unranked

9 citations

Renhong Sun, Zhongli Xu, Huen Suk Kim, Min Jeong Kim, Tao Cao +5 more

A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis

Cell Reports(2024)10.1016/j.celrep.2024.114291

N/A

0.344DataRank · unranked

7 citations

Marwa Daghsni, Reza Raeisossadati, Zhongli Xu, Emily Jane Davis, Abigail Naidich +10 more

SECANT: a biology-guided semi-supervised method for clustering, classification, and annotation of single-cell multi-omics

PNAS Nexus(2022)10.1093/pnasnexus/pgac165

N/A

0.269DataRank · unranked

5 citations

Zhongli Xu, Haoran Hu, Xueping Zhou, Yanfu Zhang, Robert Lafyatis +6 more

BREM-SC: A Bayesian Random Effects Mixture Model for Joint Clustering Single Cell Multi-omics Data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.18.911461

N/A

0.269DataRank · unranked

5 citations

Zhe Sun, Yanfu Zhang, Zhongli Xu, Heng Huang, Richard H. Duerr +4 more

MOSES: a methylation-based gene association approach for unveiling environmentally regulated genes linked to a trait or disease

Clinical Epigenetics(2024)10.1186/s13148-024-01776-x

N/A

0.165DataRank · unranked

2 citations

Yidi Qin, Hyun Jung Park, Rebecca I. Caldino Bohn, Molin Yue, Zhongli Xu +4 more

SECANT: a biology-guided semi-supervised method for clustering, classification, and annotation of single-cell multi-omics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.06.371849

N/A

0.165DataRank · unranked

2 citations

Zhongli Xu, Xueping Zhou, Yanfu Zhang, Heng Huang, Ying Ding +3 more

BREM-SC: a bayesian random effects mixture model for joint clustering single cell multi-omics data

Nucleic Acids Research(2020)10.1093/nar/gkaa314

N/A

0DataRank · unranked

103 citations

Zhe Sun, Yanfu Zhang, Zhongli Xu, Hongyi Xin, Heng Huang +5 more

Targeting the Mitochondrial Protease ClpP for Anticancer Therapy

Journal of Medicinal Chemistry(2025)10.1021/acs.jmedchem.5c01315

N/A

0DataRank · unranked

3 citations

Dmitry Pokushalov, Md Kabir, Youngeun Lee, Mrittika Chattopadhyay, Edmund C. Jenkins +5 more

Comprehensive Benchmarking of CITE-seq versus DOGMA-seq Single Cell Multimodal Omics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.15.472792

N/A

0DataRank · unranked

3 citations

Elisa Heidrich-O’Hare, Wei Chen, Richard H. Duerr, Zhongli Xu

Comprehensive benchmarking of CITE-seq versus DOGMA-seq single cell multimodal omics

Genome biology(2022)10.1186/s13059-022-02698-8

N/A

0DataRank · unranked

27 citations

Elisa Heidrich-O’Hare, Wei Chen, Richard H. Duerr, Zhongli Xu

Integrative analysis of spatial transcriptome with single-cell transcriptome and single-cell epigenome in mouse lungs after immunization

iScience(2022)10.1016/j.isci.2022.104900

N/A

0DataRank · unranked

21 citations

Xinjun Wang, Li Fan, Fujing Wang, Becky Lin, Jiebiao Wang +4 more

Nasal epithelial gene expression and total IgE in children and adolescents with asthma

Journal of Allergy and Clinical Immunology(2023)10.1016/j.jaci.2023.09.014

N/A

0DataRank · unranked

12 citations

Erick Forno, Yidan Sun, Michelle L. Manni, Yueh Ying Han, Soyeon Kim +9 more

Cis- and trans-eQTM analysis reveals novel epigenetic and transcriptomic immune markers of atopic asthma in airway epithelium

Journal of Allergy and Clinical Immunology(2023)10.1016/j.jaci.2023.05.018

N/A

0DataRank · unranked

11 citations

Zhongli Xu, Erick Forno, Yidi Qin, Hyun Jung Park, Molin Yue +7 more

Methyl-TWAS: A powerful method for in silico transcriptome-wide association studies (TWAS) using long-range DNA methylation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.10.566586

N/A

0DataRank · unranked

0 citations

Yidi Qin, Hyun Jung Park, Molin Yue, Zhongli Xu, Erick Forno +3 more

Innovative super-resolution in spatial transcriptomics: a transformer model exploiting histology images and spatial gene expression

Briefings in Bioinformatics(2024)10.1093/bib/bbae052

N/A

0DataRank · unranked

42 citations

Zhongli Xu, Xinjun Wang, Shiyue Tao, William A. MacDonald, Kun He +5 more

Harnessing the SPOP E3 Ubiquitin Ligase via a Bridged Proteolysis Targeting Chimera (PROTAC) Strategy for Targeted Protein Degradation

Journal of Medicinal Chemistry(2025)10.1021/acs.jmedchem.5c00295

N/A

0DataRank · unranked

12 citations

Jerrel L. Catlett, Youngeun Lee, Qiong Wu, Zhongli Xu, Ling Xie +5 more