Julia A. Segre

Also affiliated with National Human Genome Research Institute

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

9.3Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Papers

Driven by 41 papers — median percentile 50. Top paper: “A framework for human microbiome research”.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Structure, function and diversity of the healthy human microbiome

Nature(2012)10.1038/nature11234

N/A

1.4DataRank · unranked

10088 citations

Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger +235 more

Intestinal microbiome and metabolome signatures in patients with chronic granulomatous disease

Journal of Allergy and Clinical Immunology(2023)10.1016/j.jaci.2023.07.022

N/A

0.757DataRank · unranked

26 citations

Yu Han, Christa S. Zerbe, Theo Heller, Suk See De Ravin, Samantha A. Kreuzberg +52 more

Staphylococcal diversity in atopic dermatitis from an individual to a global scale

Cell Host & Microbe(2023)10.1016/j.chom.2023.03.010

N/A

0.635DataRank · unranked

68 citations

Catriona P. Harkins, Clay Deming, Payal Joglekar, Sean Conlan, Cassandra J Holmes +5 more

Skin Metagenomic Sequence Analysis of Early Candida auris Outbreaks in U.S. Nursing Homes

mSphere(2021)10.1128/msphere.00287-21

N/A

0.557DataRank · unranked

40 citations

Rory M. Welsh, Clay Deming, Diana M. Proctor, Pamela J. Thomas, NISC Comparative Sequencing Program +12 more

Genomic characterization of the C. tuberculostearicum species complex, a prominent member of the human skin microbiome

mSystems(2023)10.1128/msystems.00632-23

Top 35%

0.553DataRank

Top 35%18 citations

Payal Joglekar, Clayton Deming, NISC Comparative Sequencing Program, Katherine P. Lemon, Heidi H. Kong +28 more

Intestinal inflammation alters the antigen-specific immune response to a skin commensal

Cell Reports(2022)10.1016/j.celrep.2022.110891

N/A

0.477DataRank · unranked

23 citations

Laura R. Dwyer, Miqdad O. Dhariwala, Antonin Weckel, Jeanmarie R. Gonzalez, Joy N. Okoro +13 more

Restoration of the human skin microbiome following immune recovery after hematopoietic stem cell transplantation

Cell Host & Microbe(2025)10.1016/j.chom.2025.07.002

N/A

0.416DataRank · unranked

15 citations

Jungmin Han, Catriona P. Harkins, Peng Hou, Sean Conlan, Clay Deming +25 more

The intestinal microbiome and metabolome discern disease severity in cytotoxic T-lymphocyte-associated protein 4 deficiency

Microbiome(2025)10.1186/s40168-025-02028-7

N/A

0.385DataRank · unranked

12 citations

Máté Krausz, Yu Han, Noriko Mitsuiki, Annemarie Gabrysch, Christina Nöltner +15 more

Expanded microbiome niches of RAG-deficient patients

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101205

N/A

0.345DataRank · unranked

9 citations

Zeyang Shen, Sara Saheb Kashaf, Shih-Queen Lee-Lin, Sean Conlan, Jim Thomas +40 more

Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.05.543719

N/A

0.269DataRank · unranked

5 citations

Isabel F. Escapa, Ari Q. Roberts, Wei Gao, Abiola C. Obawemimo, Julia A. Segre +5 more

Whole-genome sequence of Mucor velutinosus NIH1002, a strain associated with disseminated disease

Microbiology Resource Announcements(2024)10.1128/mra.00062-24

Top 65%

0.204DataRank

Top 65%2 citations

Poorani Subramanian, Beatriz Plata Barril, Jung-Ho Youn, Pamela J. Thomas, Sergey Koren +7 more

A genome catalog of the early-life human skin microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.22.541509

Top 72%

0.114DataRank

Top 72%1 citations

Lukian Robert, Milan Stolpman, You Che, Audrey Walsh, Richard Saffery +16 more

Treatment of Relapsing HPV Diseases by Restored Function of Natural Killer Cells

New England Journal of Medicine(2021)10.1056/nejmoa2102715

N/A

0DataRank · unranked

33 citations

Amy P. Hsu, Dimana Dimitrova, Diana M. Proctor, Emily M. Mace, Peiying Ye +20 more

Long-term antibiotic exposure promotes mortality after systemic fungal infection by driving lymphocyte dysfunction and systemic escape of commensal bacteria

Cell Host & Microbe(2022)10.1016/j.chom.2022.04.013

N/A

0DataRank · unranked

139 citations

Jigar V. Desai, Emily Ricotta, Muthulekha Swamydas, Clay Deming, Sean Conlan +15 more

The future of fungi: threats and opportunities

G3 Genes Genomes Genetics(2022)10.1093/g3journal/jkac224

N/A

0DataRank · unranked

55 citations

Judith Berman, David S. Blehert, Robert A. Cramer, Christina A. Cuomo, Cameron R. Currie +29 more

A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae

Microbiome(2022)10.1186/s40168-021-01207-6

N/A

0DataRank · unranked

26 citations

Sara Saheb Kashaf, Apollo Stacy, Diana M. Proctor, Alexandre Almeida, Nicolas Bouladoux +7 more

One population, multiple lifestyles: Commensalism and pathogenesis in the human mycobiome

Cell Host & Microbe(2023)10.1016/j.chom.2023.02.010

N/A

0DataRank · unranked

64 citations

Rebecca A. Drummond, Michail S. Lionakis, Julia A. Segre, Diana M. Proctor

Integrated genomic and functional analyses of human skin–associated Staphylococcus reveal extensive inter- and intra-species diversity

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2310585120

N/A

0DataRank · unranked

36 citations

Sean Conlan, Shih-Queen Lee-Lin, Clay Deming, Sara Saheb Kashaf, NISC Comparative Sequencing Program +28 more

Integrated genomic and functional analyses of human skin-associated Staphylococcus reveals extensive inter- and intra-species diversity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.22.546190

N/A

0DataRank · unranked

7 citations

Sean Conlan, Shih-Queen Lee-Lin, Clay Deming, Sara Saheb Kashaf, NISC Comparative Sequencing Program +3 more

Genomic characterization of the C. tuberculostearicum species complex, a ubiquitous member of the human skin microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.16.545375

N/A

0DataRank · unranked

4 citations

Payal Joglekar, Clayton Deming, NISC Comparative Sequencing Program, Katherine P. Lemon, Heidi H. Kong +3 more

Discovery and engineering of the antibody response to a prominent skin commensal

Nature(2024)10.1038/s41586-024-08489-4

N/A

0DataRank · unranked

44 citations

Katherine D. Bauman, Y. Erin Chen, Pranav V. Lalgudi, Tam T. D. Nguyen, Joyce M. Swenson +24 more

Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses

mSystems(2024)10.1128/msystems.01132-24

N/A

0DataRank · unranked

12 citations

Isabel F. Escapa, Ari Q. Roberts, Wei Gao, Abiola C. Obawemimo, Julia A. Segre +5 more

Acanthamoeba Infection in a Hematopoietic Cell Transplant Recipient: Challenges in Diagnosis, Management, and Source Identification

Transplant Infectious Disease(2024)10.1111/tid.14425

N/A

0DataRank · unranked

2 citations

Sean Conlan, Anahita Mostaghim, Angela V. Michelin, Matthew J. Arduino, Mia Mattioli +14 more

Fungal impacts on Earth’s ecosystems

Nature(2025)10.1038/s41586-024-08419-4

N/A

0DataRank · unranked

94 citations

Sarah J. Gurr, Matthew C. Fisher, David S. Blehert, Charles Boone, Arturo Casadevall +28 more

Immunopathological and microbial signatures of inflammatory bowel disease in partial RAG deficiency

The Journal of Experimental Medicine(2025)10.1084/jem.20241993

N/A

0DataRank · unranked

3 citations

Francesca Pala, Poorani Subramanian, Cihan Oguz, Benjamin Schwarz, Ai Ing Lim +46 more

Skin Microbiome Shifts Associated with Elevated Squamous Cell Carcinoma Risk

Journal of Investigative Dermatology(2025)10.1016/j.jid.2025.06.1590

N/A

0DataRank · unranked

1 citations

Hiroshi Higuchi, Jung Min Han, Sean Conlan, Marjan Azin, Ranya Guennoun +9 more

Trichophyton concentricum fungal infections and skin microbiomes of Indigenous Peninsular Malaysians

Cell(2025)10.1016/j.cell.2025.05.034

N/A

0DataRank · unranked

3 citations

Soo Ching Lee, Chioma Aneke, Sean Conlan, Azdayanti Muslim, Clay Deming +17 more

Candida auris Metabolism and Growth Preferences in Physiologically Relevant Skin-like Conditions

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.18.654780

N/A

0DataRank · unranked

1 citations

Clay Deming, Shih-Queen Lee-Lin, Sean Conlan, Zeyang Shen, Ryan A. Blaustein +2 more

Murine model of colonization with fungal pathogen Candida auris to explore skin tropism, host risk factors and therapeutic strategies

Cell Host & Microbe(2020)10.1016/j.chom.2020.12.002

N/A

0DataRank · unranked

137 citations

Charlotte Hurabielle, Rebecca A. Drummond, Nicolas Bouladoux, Jigar V. Desai, Choon Kiat Sim +4 more

Cutaneous T-Cell Lymphoma Skin Microbiome Is Characterized by Shifts in Certain Commensal Bacteria but not Viruses when Compared with Healthy Controls

Journal of Investigative Dermatology(2020)10.1016/j.jid.2020.10.021

N/A

0DataRank · unranked

33 citations

Margaret A. MacGibeny, Katherine G. Thompson, Bianka N. Bubic, Xin Huang, Isabelle Brown +6 more

Exclusive enteral nutrition induced sustained changes in the microbiota and improved inflammatory bowel disease in a pediatric patient with chronic granulomatous disease

The Journal of Allergy and Clinical Immunology In Practice(2020)10.1016/j.jaip.2020.12.014

N/A

0DataRank · unranked

7 citations

Yu Han, Samantha Kreuzburg, Theo Heller, Joseph A. Church, Caroline Grou +8 more

Cultivating fungal research

Science(2020)10.1126/science.aaz8086

N/A

0DataRank · unranked

41 citations

Julia A. Segre, Heidi H. Kong

Surveillance of Carbapenem-Resistant Klebsiella pneumoniae: Tracking Molecular Epidemiology and Outcomes through a Regional Network

UNC Libraries(2020)10.17615/xx3r-5h52

N/A

0DataRank · unranked

0 citations

Pamela Mason, Julie T. Ziegler, Raymond Webber, Jacqueline Fox, Scott Evans +16 more

Infection trains the host for microbiota-enhanced resistance to pathogens

Cell(2021)10.1016/j.cell.2020.12.011

N/A

0DataRank · unranked

243 citations

Vinícius Andrade‐Oliveira, John A. McCulloch, Benedikt Hild, Ji Hoon Oh, Paula Juliana Pérez‐Chaparro +9 more

Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions

Nature Microbiology(2021)10.1038/s41564-021-01011-w

N/A

0DataRank · unranked

220 citations

Diana M. Proctor, Clay Deming, Paul Saary, Martin Hölzer, NISC Comparative Sequencing Program +31 more

Integrated genomic, epidemiologic investigation of Candida auris skin colonization in a skilled nursing facility

Nature Medicine(2021)10.1038/s41591-021-01383-w

N/A

0DataRank · unranked

185 citations

Thelma Dangana, D. Joseph Sexton, Christine Fukuda, Rachel D Yelin, Mary Stanley +44 more

Alterations of human skin microbiome and expansion of antimicrobial resistance after systemic antibiotics

Science Translational Medicine(2021)10.1126/scitranslmed.abd8077

N/A

0DataRank · unranked

113 citations

Catriona P. Harkins, Nicole H. Schwardt, J. Portillo, NISC Comparative Sequencing Program, Matthew Zimmerman +10 more

Affirming NIH’s commitment to addressing structural racism in the biomedical research enterprise

Cell(2021)10.1016/j.cell.2021.05.014

N/A

0DataRank · unranked

111 citations

Amy Adams, Courtney Ferrell Aklin, Trevor Archer, Marie Bernard, Ericka Boone +16 more

Shifts in the Skin Bacterial and Fungal Communities of Healthy Children Transitioning through Puberty

Journal of Investigative Dermatology(2021)10.1016/j.jid.2021.04.034

N/A

0DataRank · unranked

97 citations

Nicole H. Schwardt, Jay‐Hyun Jo, Zhiwei Zhang, Valentina Pillai, Sheila Phang +10 more

Disruption of the endopeptidase ADAM10-Notch signaling axis leads to skin dysbiosis and innate lymphoid cell-mediated hair follicle destruction

Immunity(2021)10.1016/j.immuni.2021.09.001

N/A

0DataRank · unranked

65 citations

Seon‐Pil Jin, Shubham Goel, Jay‐Hyun Jo, Benjamin Voisin, Do Young ‍Kim +10 more

Julia A. Segre

Indexed papers

Top data-sharing exemplar

Papers