🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Bruce R. Donald

Duke University

ORCID: 0000-0001-6884-4398
Biochemistry, Genetics and Molecular BiologyMaterials ScienceComputer ScienceEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 14 papers. Top paper: “Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface”.

Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007447
N/A
0.425DataRank · unranked
16 citations

Marcel S. Frenkel, Graham T. Holt, Jonathan Jou, Adegoke A. Ojewole, Bruce R. Donald +1 more

Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.28.224667
N/A
0DataRank · unranked
0 citations

Stephanie M. Reeve, Adegoke A. Ojewole, Marcel S. Frenkel, Graham T. Holt, Pablo Gaínza +5 more

Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009855
N/A
0DataRank · unranked
14 citations

Stephanie M. Reeve, Graham T. Holt, Adegoke A. Ojewole, Marcel S. Frenkel, Pablo Gaínza +5 more

Resistor: An algorithm for predicting resistance mutations via Pareto optimization over multistate protein design and mutational signatures

Cell Systems(2022)10.1016/j.cels.2022.09.003
N/A
0DataRank · unranked
10 citations

Andreas Feichtner, Eduard Stefan, Teresa Kaserer, Bruce R. Donald, Nathan Guerin

Resistor: an algorithm for predicting resistance mutations using Pareto optimization over multistate protein design and mutational signatures

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.18.476733
N/A
0DataRank · unranked
1 citations

Andreas Feichtner, Eduard Stefan, Teresa Kaserer, Bruce R. Donald, Nathan Guerin

Discovery, characterization, and redesign of potent antimicrobial thanatin orthologs from Chinavia ubica and Murgantia histrionica targeting E. coli LptA

Journal of Structural Biology X(2023)10.1016/j.yjsbx.2023.100091
N/A
0DataRank · unranked
10 citations

Amanuel Kibrom, Bruce R. Donald, Pei Zhou, Kelly Huynh

Disruptor: Computational identification of oncogenic mutants disrupting protein-protein and protein-DNA interactions

Communications Biology(2023)10.1038/s42003-023-05089-2
N/A
0DataRank · unranked
5 citations

Andreas Lieb, Nathan Guerin, Bruce R. Donald, Eduard Stefan, Teresa Kaserer +1 more

Protocol for predicting drug-resistant protein mutations to an ERK2 inhibitor using RESISTOR

STAR Protocols(2023)10.1016/j.xpro.2023.102170
N/A
0DataRank · unranked
7 citations

Teresa Kaserer, Bruce R. Donald, Nathan Guerin

Predicting Affinity Through Homology (PATH): Interpretable Binding Affinity Prediction with Persistent Homology

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.16.567384
N/A
0DataRank · unranked
1 citations

Bruce R. Donald, Yuxi Long

DexDesign: an OSPREY-based algorithm for designing de novo D-peptide inhibitors

Protein Engineering Design and Selection(2024)10.1093/protein/gzae007
N/A
0DataRank · unranked
8 citations

Henry Childs, Pei Zhou, Bruce R. Donald, Nathan Guerin

DexDesign: A new OSPREY-based algorithm for designing de novo D-peptide inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.12.579944
N/A
0DataRank · unranked
0 citations

Henry Childs, Pei Zhou, Bruce R. Donald, Nathan Guerin

Protocol for Designing De Novo Noncanonical Peptide Binders in OSPREY

Journal of Computational Biology(2024)10.1089/cmb.2024.0669
N/A
0DataRank · unranked
0 citations

Nathan Guerin, Pei Zhou, Bruce R. Donald, Henry Childs

Predicting pose distribution of protein domains connected by flexible linkers is an unsolved problem

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.27.650885
N/A
0DataRank · unranked
6 citations

Feng Yu, Edward Y. Cheng, Aulane Mpouli, Aimee C. Soe, Michal Hammel +5 more

CCK* (Convex Closure K*): A Suite of Algorithms for De Novo L- and D-peptide Design

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.21.689740
N/A
0DataRank · unranked
0 citations

Allen C. McBride, Bruce R. Donald, Henry Childs