Tim van Opijnen

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 33 papers. Top paper: “Diclofenac sensitizes multi-drug resistant Acinetobacter baumannii to colistin”.

Diclofenac sensitizes multi-drug resistant Acinetobacter baumannii to colistin

PLoS Pathogens(2024)10.1371/journal.ppat.1012705

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0.424DataRank · unranked

10 citations

Clay D. Jackson-Litteken, Jenna C. McGuffey, Anna J. Hooppaw, Sophie Bodrog, Leila Jebeli +7 more

Identification of determinants that allow maintenance of high-level fluoroquinolone resistance in Acinetobacter baumannii

mBio(2024)10.1128/mbio.03221-24

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0.269DataRank · unranked

5 citations

Wenwen Huo, Juan Hernandez-Bird, Arnaldo E. Castañeda, Jinna Bai, Sapna Syal +5 more

Transposon Insertion Sequencing, a Global Measure of Gene Function

Annual Review of Genetics(2020)10.1146/annurev-genet-112618-043838

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0DataRank · unranked

60 citations

Henry L. Levin, Tim van Opijnen

Entropy of a bacterial stress response is a generalizable predictor for fitness and antibiotic sensitivity

Nature Communications(2020)10.1038/s41467-020-18134-z

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0DataRank · unranked

50 citations

Defne Surujon, Juan C. Ortiz‐Marquez, Wenwen Huo, Ralph R. Isberg, José Bento +2 more

Detection of a multi‐disease biomarker in saliva with graphene field effect transistors

Medical Devices & Sensors(2020)10.1002/mds3.10121

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0DataRank · unranked

21 citations

Mason Gray, Juan C. Ortiz‐Marquez, Andrew M. Weber, Cameron R. Desmond, Avni A. Argun +3 more

ShinyOmics: collaborative exploration of omics-data

BMC Bioinformatics(2020)10.1186/s12859-020-3360-x

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16 citations

Tim van Opijnen, Defne Surujon

Detection of a multi-disease biomarker in Saliva with Graphene Field Effect Transistors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.22.111047

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0DataRank · unranked

1 citations

Mason Gray, Juan C. Ortiz‐Marquez, Andrew M. Weber, Cameron R. Desmond, Avni A. Argun +3 more

Essential Gene Analysis in Acinetobacter baumannii by High-Density Transposon Mutagenesis and CRISPR Interference

Journal of Bacteriology(2021)10.1128/jb.00565-20

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0DataRank · unranked

70 citations

Yunfei Dai, Andrew Farinha, Amy Y. Tang, Sapna Syal, Germán Vargas-Cuebas +4 more

Host-informed therapies for the treatment of pneumococcal pneumonia

Trends in Molecular Medicine(2021)10.1016/j.molmed.2021.07.008

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0DataRank · unranked

13 citations

Shuying Xu, Brian Noonan, Michael K. Mansour, John M. Leong, Tim van Opijnen +1 more

Immunosuppression broadens evolutionary pathways to treatment failure during Acinetobacter baumannii pneumonia

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.07.438861

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3 citations

Lindsay M. Busch, Juan Hernandez-Bird, Efrat Hamami, C. W. Marshall, Edward Geisinger +5 more

Rapid, multianalyte detection of opioid metabolites in wastewater

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.09.459680

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0DataRank · unranked

0 citations

Muhit Rana, Michael Geiwitz, Niazul Islam Khan, Matthew Catalano, Juan C. Ortiz‐Marquez +8 more

A bacterial pan-genome makes gene essentiality strain-dependent and evolvable

Nature Microbiology(2022)10.1038/s41564-022-01208-7

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0DataRank · unranked

140 citations

Emily Rudmann, Jien Li, Defne Surujon, Jon Anthony, Matthew W. Frank +6 more

Immunosuppression broadens evolutionary pathways to drug resistance and treatment failure during Acinetobacter baumannii pneumonia in mice

Nature Microbiology(2022)10.1038/s41564-022-01126-8

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0DataRank · unranked

52 citations

Lindsay M. Busch, Juan Hernandez-Bird, Efrat Hamami, C. W. Marshall, Edward Geisinger +5 more

Interspecies recombination, not de novo mutation, maintains virulence after β-lactam resistance acquisition in Streptococcus pneumoniae

Cell Reports(2022)10.1016/j.celrep.2022.111835

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14 citations

Tina H. Dao, Qidong Jia, Juan C. Ortiz‐Marquez, Haley Echlin, Peter Vogel +3 more

A bacterial pan-genome makes gene essentiality strain-dependent and evolvable

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.08.479609

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0DataRank · unranked

6 citations

Emily Rudmann, Jien Li, Defne Surujon, Jon Anthony, Matthew W. Frank +6 more

Virus-assisted directed evolution of enhanced suppressor tRNAs in mammalian cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.21.477302

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0DataRank · unranked

2 citations

Delilah Jewel, Rachel L. Huang, Zeyu Zhu, Xiaofu Cao, Muhammad Pasha +4 more

A genome-wide atlas of antibiotic susceptibility targets and pathways to tolerance

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.26.477867

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0DataRank · unranked

2 citations

Federico Rosconi, Bharathi Sundaresh, Emily Rudmann, Luisa María Nieto Ramírez, Andrew T. Nishimoto +12 more

Genome-wide phage susceptibility analysis in Acinetobacter baumannii reveals capsule modulation strategies that determine phage infectivity

PLoS Pathogens(2023)10.1371/journal.ppat.1010928

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32 citations

Nicole Raustad, Jason Denoncourt, Tim van Opijnen, Edward Geisinger, Jinna Bai

Droplet Tn‐Seq identifies the primary secretion mechanism for yersiniabactin in Yersinia pestis

EMBO Reports(2023)10.15252/embr.202357369

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8 citations

Derek Thibault, Taylor M. Garrison, Amanda Brady, Haixun Guo, Thomas E. Kehl‐Fie +5 more

CRISPRi-TnSeq: A genome-wide high-throughput tool for bacterial essential-nonessential genetic interaction mapping

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.31.543074

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0DataRank · unranked

8 citations

Xue Liu, Julien Dénéréaz, Hongshik Park, Dmitry Leshchiner, Bruce Liu +4 more

Dual Membrane-spanning Anti-Sigma Factors Regulate Vesiculation in Gut Bacteroidota

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.13.548920

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0DataRank · unranked

5 citations

Mariana G. Sartorio, Biswanath Jana, Nichollas E. Scott, Wandy L. Beatty, Juan C. Ortiz‐Marquez +5 more

Identification of Determinants that Allow Maintenance of High-Level Fluoroquinolone Resistance in Acinetobacter baumannii

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.03.560562

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0DataRank · unranked

3 citations

Wenwen Huo, Juan Hernandez-Bird, Arnaldo E. Castañeda, Jinna Bai, Sapna Syal +5 more

CRISPRi–TnSeq maps genome-wide interactions between essential and non-essential genes in bacteria

Nature Microbiology(2024)10.1038/s41564-024-01759-x

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0DataRank · unranked

29 citations

Xue Liu, Julien Dénéréaz, Hongshik Park, Dmitry Leshchiner, Bruce Liu +5 more

Dual membrane-spanning anti-sigma factors regulate vesiculation in Bacteroides thetaiotaomicron

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2321910121

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0DataRank · unranked

26 citations

Mariana G. Sartorio, Biswanath Jana, Nichollas E. Scott, Wandy L. Beatty, Juan C. Ortiz‐Marquez +5 more

Enhanced Directed Evolution in Mammalian Cells Yields a Hyperefficient Pyrrolysyl tRNA for Noncanonical Amino Acid Mutagenesis

Angewandte Chemie International Edition(2024)10.1002/anie.202316428

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0DataRank · unranked

17 citations

Rachel E. Kelemen, Rachel L. Huang, Zeyu Zhu, Bharathi Sundaresh, Kaitlin Malley +6 more

Directed Evolution of a Bacterial Leucyl tRNA in Mammalian Cells for Enhanced Noncanonical Amino Acid Mutagenesis

ACS Synthetic Biology(2024)10.1021/acssynbio.4c00196

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0DataRank · unranked

11 citations

Delilah Jewel, Rachel E. Kelemen, Quan Pham, Tarah J. Yared, Shu Wang +8 more

Streptococcus pneumoniae favors tolerance via metabolic adaptation over resistance to circumvent fluoroquinolones

mBio(2024)10.1128/mbio.02828-23

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0DataRank · unranked

9 citations

Haley Echlin, Abigail McKnight, Enolia Marr, Julia Junker, Qidong Jia +6 more

RNA cis-regulators are important for Streptococcus pneumoniae in vivo success

PLoS Genetics(2024)10.1371/journal.pgen.1011188

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6 citations

A. Perry, Sara M. Hubbell, Matthew C. Eichelman, Tim van Opijnen, Michelle M. Meyer +1 more

Enhanced Directed Evolution in Mammalian Cells Yields a Hyperefficient Pyrrolysyl tRNA for Noncanonical Amino Acid Mutagenesis

Angewandte Chemie(2024)10.1002/ange.202316428

N/A

0DataRank · unranked

2 citations

Rachel E. Kelemen, Rachel L. Huang, Zeyu Zhu, Bharathi Sundaresh, Kaitlin Malley +6 more

Directed evolution of a bacterial leucyl tRNA in mammalian cells for enhanced noncanonical amino acid mutagenesis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.19.581038

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0DataRank · unranked

1 citations

Delilah Jewel, Rachel E. Kelemen, Quan Pham, Shu Wang, Soumya Jyoti Singha Roy +7 more

A decade of advances in transposon-insertion sequencing

Nature Reviews Genetics(2020)10.1038/s41576-020-0244-x

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0DataRank · unranked

421 citations

Lars Barquist, Andrew L. Goodman, Ian T. Paulsen, Julian Parkhill, Tim van Opijnen +1 more

Covalent Inhibition of a Host–Pathogen Protein–Protein Interaction Reduces the Infectivity of Streptococcus pneumoniae

JACS Au(2024)10.1021/jacsau.4c00195

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0DataRank · unranked

0 citations

Fan Yang, Bharathi Sundaresh, Federico Rosconi, Tim van Opijnen, Jianmin Gao +1 more

Dielectrophoresis assisted rapid, selective and single cell detection of antibiotic resistant bacteria with G-FETs

Biosensors and Bioelectronics(2020)10.1016/j.bios.2020.112123

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0DataRank · unranked

89 citations

Wenjian Wang, Juan C. Ortiz‐Marquez, Matthew Catalano, Mason Gray, Nadia Biglari +6 more