🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Dong Si

University of Washington Bothell

ORCID: 0000-0001-7039-2589
Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
1.8Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7
Top 23%
0.871DataRank
Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

Papers

Driven by 15 papers — median percentile 66. Top paper: “Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge”.

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7
Top 23%
0.871DataRank
Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

Neural representations of cryo-EM maps and a graph-based interpretation

BMC Bioinformatics(2022)10.1186/s12859-022-04942-1
Top 34%
0.586DataRank
Top 34%7 citations

Dong Si, Nathan Ranno

Outcomes of the 2019 EMDataResource model challenge: validation of cryo-EM models at near-atomic resolution

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.12.147033
Top 48%
0.375DataRank
Top 48%7 citations

Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad +49 more

Artificial Intelligence for Bioinformatics: Applications in Protein Folding Prediction

2019 IEEE Technology & Engineering Management Conference (TEMSCON)(2019)10.1109/temscon.2019.8813656
N/A
0.292DataRank · unranked
6 citations

Leong Chan, Dong Si, Kasey Johnson, Connor Whyte, Renzhi Cao +1 more

Cryo-EM structure of an extracellular Geobacter OmcE cytochrome filament reveals tetrahaem packing

Nature Microbiology(2022)10.1038/s41564-022-01159-z
N/A
0DataRank · unranked
120 citations

Khawla Mustafa, Victor Suciu, Komal Joshi, Chi Ho Chan, Sol Choi +6 more

Structure of Geobacter OmcZ filaments suggests extracellular cytochrome polymers evolved independently multiple times

eLife(2022)10.7554/elife.81551
N/A
0DataRank · unranked
67 citations

Chi Ho Chan, Victor Suciu, Khawla Mustafa, Madeline Ammend, Dong Si +4 more

DeepTracer-ID: De novo protein identification from cryo-EM maps

Biophysical Journal(2022)10.1016/j.bpj.2022.06.025
N/A
0DataRank · unranked
52 citations

Fengbin Wang, Kiernan Connolly, Hanze Meng, Zhangli Su, Virginija Cvirkaitė‐Krupovič +4 more

Structural Insights Into the Initiation and Elongation of Ubiquitination by Ubr1

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.12.439291
N/A
0DataRank · unranked
3 citations

Qingyun Zheng, Tian Wang, Lujun Liang, Junxiong Mao, Chong Zuo +8 more

DeepTracer ID: De Novo Protein Identification from Cryo-EM Maps

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.03.494766
N/A
0DataRank · unranked
7 citations

Fengbin Wang, Kiernan Connolly, Hanze Meng, Zhangli Su, Virginija Cvirkaitė‐Krupovič +4 more

DeepTracer-Denoising: Deep Learning for 3D Electron Density Map Denoising

2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2022)10.1109/bibm55620.2022.9994879
N/A
0DataRank · unranked
3 citations

Dong Si, Haowen Guan

Structure of Geobacter OmcZ filaments suggests extracellular cytochrome polymers evolved independently multiple times

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.17.500359
N/A
0DataRank · unranked
0 citations

Chi Ho Chan, Victor Suciu, Khawla Mustafa, Dong Si, Allon I. Hochbaum +3 more

Fast and automated protein-DNA/RNA macromolecular complex modeling from cryo-EM maps

Briefings in Bioinformatics(2023)10.1093/bib/bbac632
N/A
0DataRank · unranked
28 citations

Hanze Meng, Minglei Zhao, Fengbin Wang, Jie Hou, Renzhi Cao +2 more

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

Nature Methods(2021)10.1038/s41592-020-01051-w
N/A
0DataRank · unranked
119 citations

Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad +49 more

Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge

Research Square(2024)10.21203/rs.3.rs-3864137/v1
N/A
0DataRank · unranked
2 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent Chen +76 more

Deep Learning to Predict Protein Backbone Structure from High-Resolution Cryo-EM Density Maps

Scientific Reports(2020)10.1038/s41598-020-60598-y
N/A
0DataRank · unranked
110 citations

Spencer A. Moritz, Jonas Pfab, Jie Hou, Renzhi Cao, Liguo Wang +3 more